DR405880

Overview
NameDR405880
Unique NameDR405880
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5704 contig Csv1_Contig5704:54..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR405880 vs. ExPASy Swiss-Prot
Match: CATB_RAT (Cathepsin B OS=Rattus norvegicus GN=Ctsb PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.184e-15
Identity = 66/218 (30.28%), Postives = 93/218 (42.66%), Query Frame = 2
Query:   65 VKDQGSCGSCWXFSTTGAIEGINALVTGDLISL--SEQELVDCDTTSYG--CDGGYMDYAFE-WV---INNGGIDTE------------------SDYPYTGVDGT--CNITKEETKVVSID-----GYKDVEPSDSA--LLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITR 613
            ++DQGSCGSCW F    A+     + T   +++  S ++L+ C     G  C+GGY   A+  W    + +GG+                     S  P TG   T  CN   E     S       GY     SDS   ++    +     G     SDF  Y SG+Y  +  +      HA+ I+G+G ENG  YW+V NSW   WG +G+F I R
Sbjct:   99 IRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGSRPPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGD--VMGGHAIRILGWGIENGVPYWLVANSWNVDWGDNGFFKILR 314          
BLAST of DR405880 vs. ExPASy Swiss-Prot
Match: CATZ_HUMAN (Cathepsin Z OS=Homo sapiens GN=CTSZ PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.136e-15
Identity = 64/200 (32.00%), Postives = 89/200 (44.50%), Query Frame = 2
Query:   83 CGSCWXFSTTGAI-EGINALVTGDLIS--LSEQELVDCDTTSYGCDGG----YMDYAFEWVINNGGIDTESDYPYTGVD---------GTCNITKEETKVVS-----IDGYKDVEPSDSALLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITRDT 619
            CGSCW  ++T A+ + IN    G   S  LS Q ++DC      C+GG      DYA +      GI  E+   Y   D         GTCN  KE   + +     +  Y  +   +  +       PIS G++ +      YT GIY      D  YI+H V + G+G  +G +YWIV+NSWG  WG  G+  I   T
Sbjct:   89 CGSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDCGNAG-SCEGGNDLSVWDYAHQH-----GIPDETCNNYQAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATER-LANYTGGIYAE--YQDTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTST 279          
BLAST of DR405880 vs. ExPASy Swiss-Prot
Match: CATZ_BOVIN (Cathepsin Z OS=Bos taurus GN=CTSZ PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 9.320e-15
Identity = 61/196 (31.12%), Postives = 88/196 (44.90%), Query Frame = 2
Query:   83 CGSCWXFSTTGAI-EGINALVTGDLIS--LSEQELVDCDTTSYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVD---------GTCNITKE-----ETKVVSIDGYKDVEPSDSALLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITRDT 619
            CGSCW   +T A+ + IN    G   S  LS Q ++DC      C+GG     +E+  +  GI  E+   Y   D         GTC   KE        +  +  Y  +   +  +       PIS G++ +      YT GIY+    ND  +I+H V + G+G  +G +YWIV+NSWG  WG  G+  I   T
Sbjct:   90 CGSCWAHGSTSAMADRINIKRKGAWPSTLLSVQHVIDCGDAG-SCEGGNDLPVWEYA-HRHGIPDETCNNYQAKDQECDKFNQCGTCTEFKECHVIKNYTLWKVGDYGSLSGREKMMAEIYTNGPISCGIMATEK-MSNYTGGIYSE--YNDQAFINHIVSVAGWGVSDGMEYWIVRNSWGEPWGEHGWMRIVTST 280          
BLAST of DR405880 vs. ExPASy Swiss-Prot
Match: CATZ_MOUSE (Cathepsin Z OS=Mus musculus GN=Ctsz PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.139e-12
Identity = 60/197 (30.46%), Postives = 87/197 (44.16%), Query Frame = 2
Query:   83 CGSCWXFSTTGAI-EGINALVTG--DLISLSEQELVDCDTTSYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVD---------GTCNITKEETKVVS-----IDGYKDVEPSDSALLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYG-SENGEDYWIVKNSWGTSWGIDGYFYITRDT 619
            CGSCW   +T A+ + IN    G    I LS Q ++DC      C+GG     +E+  +  GI  E+   Y   D         GTC   KE   + +     +  Y  +   +  +       PIS G++ +      YT GIY      D   I+H + + G+G S +G +YWIV+NSWG  WG  G+  I   T
Sbjct:   91 CGSCWAHGSTSAMADRINIKRKGAWPSILLSVQNVIDCGNAG-SCEGGNDLPVWEYA-HKHGIPDETCNNYQAKDQDCDKFNQCGTCTEFKECHTIQNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATEM-MSNYTGGIYAEH--QDQAVINHIISVAGWGVSNDGIEYWIVRNSWGEPWGEKGWMRIVTST 282          
BLAST of DR405880 vs. ExPASy Swiss-Prot
Match: CATZ_RAT (Cathepsin Z OS=Rattus norvegicus GN=Ctsz PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.654e-12
Identity = 59/197 (29.95%), Postives = 87/197 (44.16%), Query Frame = 2
Query:   83 CGSCWXFSTTGAI-EGINALVTGDLIS--LSEQELVDCDTTSYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVD---------GTCNITKEETKVVS-----IDGYKDVEPSDSALLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYG-SENGEDYWIVKNSWGTSWGIDGYFYITRDT 619
            CGSCW   +T A+ + IN    G   S  LS Q ++DC      C+GG     +E+  +  GI  E+   Y   D         GTC   KE   + +     +  Y  +   +  +       PIS G++ +      YT GIY      +   I+H + + G+G S +G +YWIV+NSWG  WG  G+  I   T
Sbjct:   91 CGSCWAHGSTSALADRINIKRKGAWPSTLLSVQNVIDCGNAG-SCEGGNDLPVWEYA-HKHGIPDETCNNYQAKDQECDKFNQCGTCTEFKECHTIQNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATER-MSNYTGGIYTE--YQNQAIINHIISVAGWGVSNDGIEYWIVRNSWGEPWGERGWMRIVTST 282          
The following BLAST results are available for this feature:
BLAST of DR405880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
CATB_RAT4.184e-1530.28Cathepsin B OS=Rattus norvegicus GN=Ctsb PE=1 SV=2[more]
CATZ_HUMAN7.136e-1532.00Cathepsin Z OS=Homo sapiens GN=CTSZ PE=1 SV=1[more]
CATZ_BOVIN9.320e-1531.12Cathepsin Z OS=Bos taurus GN=CTSZ PE=2 SV=2[more]
CATZ_MOUSE1.139e-1230.46Cathepsin Z OS=Mus musculus GN=Ctsz PE=2 SV=1[more]
CATZ_RAT5.654e-1229.95Cathepsin Z OS=Rattus norvegicus GN=Ctsz PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248B01 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405880 ID=DR405880; Name=DR405880; organism=Citrus sinensis; type=EST; length=688bp
GGGGTACAATCATGCGAAGCACCATCGAGCTTGGATTGGAGGAAAAGGGG
AATCGTTACTCCTAGTTAAGGACCAAGGAAGCTGTGGAAGTTGTTGGNNG
TTCTCTACGACTGGAGCCATTGAAGGAATAAATGCCTTGGTCACTGGAGA
CCTCATTAGCCTTTCGGAACAAGAACTCGTGGATTGTGATACCACAAGCT
ATGGATGTGATGGAGGCTACATGGACTATGCATTTGAATGGGTTATTAAC
AACGGTGGAATCGACACAGAATCTGATTATCCTTACACTGGTGTCGATGG
TACCTGCAATATCACCAAGGAGGAAACCAAAGTTGTATCTATTGATGGTT
ATAAAGATGTAGAGCCATCCGATAGTGCACTGCTATGTGCTGCAGTTCAA
CAACCGATTAGCGTTGGCATGGTTGGCTCTGCAAGTGATTTTCAGCTATA
TACAAGTGGAATTTACAATGGTGACTGTTCCAACGACCCATATTACATTG
ATCATGCGGTTTTGATAGTTGGTTATGGCTCTGAAAATGGTGAAGATTAT
TGGATTGTAAAGAATTCTTGGGGAACAAGTTGGGGAATTGACGGATACTT
TTACATAACAAGGGACACCAGTTTAGAATATGGTAAATGTGCCATCAATG
CTATGGCTTCTTATCCAATCGAAGAATCCTATGCACCA
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