DR405287

Overview
NameDR405287
Unique NameDR405287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405287 vs. ExPASy Swiss-Prot
Match: NFU1_DROGR (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila grimshawi GN=GH17809 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.611e-43
Identity = 99/193 (51.30%), Postives = 128/193 (66.32%), Query Frame = 2
Query:  140 RTLSYLSNPITSQNSTLLKSIPLSSSVQSGKWNLFRVQRRTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLR 715
            +T S L+  +T Q   L K  PL +          ++ +R+MFIQTQ TPNP SL F PG  V+  G+  DFP+A AA  SPLAK L+ V+G+  VFFGSDFIT++K E+  W L+KPE+FA IMDF++SG P+  ++   A  DT I EDD ETV MIKELL+TRIRP VQ+DGGDI +  +  E G VKL+
Sbjct:   47 KTYSTLAVDLTKQQMLLRK--PLETLA-------LQITKRSMFIQTQDTPNPDSLKFLPGVEVLGKGNTYDFPSATAAHCSPLAKLLFRVEGVRAVFFGSDFITISKEENGEWGLIKPEVFAVIMDFFASGLPILHEARPNA--DTEILEDDDETVMMIKELLDTRIRPTVQEDGGDIVFISY--EKGVVKLK 226          
BLAST of DR405287 vs. ExPASy Swiss-Prot
Match: NFU1_DROVI (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila virilis GN=GJ19011 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.918e-42
Identity = 90/158 (56.96%), Postives = 113/158 (71.52%), Query Frame = 2
Query:  245 RVQRRTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLR 715
            ++ RR+MFIQTQ TPNP SL F PG  V+  G+  DFP+  AA  SPLAK L+ V+G+  VFFG DFIT++K E   W L+KPE+FA IMDF++SG P+  ++   A  DT I EDD ETV MIKELL+TRIRP VQ+DGGDI + G+  E G VKL+
Sbjct:   69 QISRRSMFIQTQDTPNPESLKFLPGVDVLGKGNTYDFPSGSAAHCSPLAKLLFRVEGVRAVFFGGDFITISKEESGEWGLIKPEVFAVIMDFFASGLPVIHEARPNA--DTEILEDDDETVMMIKELLDTRIRPTVQEDGGDIVFMGY--ENGIVKLK 222          
BLAST of DR405287 vs. ExPASy Swiss-Prot
Match: NFU1_DROAN (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila ananassae GN=GF20932 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.290e-42
Identity = 89/154 (57.79%), Postives = 109/154 (70.78%), Query Frame = 2
Query:  257 RTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLR 715
            R MFIQTQ TPNP SL F PG  V+  G+  DFP+   A  SPLAK L+ V+G+  VFFG+DFIT++K E   W L+KPE+FA IMDF++SG P+  +S   A  DT I EDD ETV MIKELL+TRIRP VQ+DGGDI + G+  E G VKL+
Sbjct:   65 RNMFIQTQDTPNPESLKFLPGVEVLGKGNTHDFPSGTTAHGSPLAKLLFRVEGVRAVFFGADFITISKEEGAEWSLIKPEVFAVIMDFFASGLPILHESTPNA--DTEILEDDDETVMMIKELLDTRIRPTVQEDGGDIVFMGY--ENGIVKLK 214          
BLAST of DR405287 vs. ExPASy Swiss-Prot
Match: NFU1_DROPS (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=GA22888 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.624e-41
Identity = 88/157 (56.05%), Postives = 112/157 (71.34%), Query Frame = 2
Query:  248 VQRRTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLR 715
            + +R+MFIQTQ TPNP SL F PG  V+  G+  DFP+  AA  SPLAK L+ V+G+  VFFGSDFIT++K E   W L+KPE+FA IMDF++SG P+  ++   A  DT I +DD ETV MIKELL+TRIRP VQ+DGGDI +  +  E G VKL+
Sbjct:   62 IGKRSMFIQTQDTPNPDSLKFLPGVEVLGKGNTYDFPSGTAAHCSPLAKLLFRVEGVRAVFFGSDFITISKEESAEWSLIKPEVFAVIMDFFASGLPILHEARPNA--DTEILDDDDETVMMIKELLDTRIRPTVQEDGGDIVFISY--ENGVVKLK 214          
BLAST of DR405287 vs. ExPASy Swiss-Prot
Match: NFU1_DROPE (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila persimilis GN=GL13432 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.624e-41
Identity = 88/157 (56.05%), Postives = 112/157 (71.34%), Query Frame = 2
Query:  248 VQRRTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLR 715
            + +R+MFIQTQ TPNP SL F PG  V+  G+  DFP+  AA  SPLAK L+ V+G+  VFFGSDFIT++K E   W L+KPE+FA IMDF++SG P+  ++   A  DT I +DD ETV MIKELL+TRIRP VQ+DGGDI +  +  E G VKL+
Sbjct:   58 IGKRSMFIQTQDTPNPDSLKFLPGVEVLGKGNTYDFPSGTAAHCSPLAKLLFRVEGVRAVFFGSDFITISKEESAEWSLIKPEVFAVIMDFFASGLPILHEARPNA--DTEILDDDDETVMMIKELLDTRIRPTVQEDGGDIVFISY--ENGVVKLK 210          
BLAST of DR405287 vs. ExPASy Swiss-Prot
Match: YH9J_SCHPO (NifU-like protein C1709.19c OS=Schizosaccharomyces pombe GN=SPBC1709.19c PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.911e-40
Identity = 84/198 (42.42%), Postives = 129/198 (65.15%), Query Frame = 2
Query:  134 YSRTLSYLSNPITSQNSTLLKSIPLSSS--VQSGKWNLFRVQRRTMFIQTQPTPNPSSLMFYPGKPVME--VGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLR 715
            + R + + S     Q  T L   P+SS+  V + ++ L  +  R+++I+++ TPN ++L F PG  ++   +GS +F   +  +NSPLA+ L+ +DG+  +FFG DFITV+K   T W  +KPE+F+ IM+  S+G P+  +     A DT I E DS+ VAMIKEL+ET IRP++Q+DGGD+E+RGFD +TGTV L+
Sbjct:    3 FPRVVPFQSLRTAFQKKTFL---PVSSAGNVFTPRFQLQAI--RSIWIRSEETPNENALKFLPGLDILPPTIGSCEFMRGQGTVNSPLAQKLFDIDGVDSIFFGKDFITVSKGAGTEWAQMKPEVFSVIMEHLSNGSPVLSEEPLKGASDTQILESDSQIVAMIKELIETSIRPSIQEDGGDVEFRGFDEKTGTVSLK 195          
BLAST of DR405287 vs. ExPASy Swiss-Prot
Match: NFU1_YEAST (NifU-like protein, mitochondrial OS=Saccharomyces cerevisiae GN=NFU1 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 7.341e-18
Identity = 60/188 (31.91%), Postives = 96/188 (51.06%), Query Frame = 2
Query:  212 SSVQSGKWNLFRVQ-RRTMFIQTQPTPNPSSLMFYP--GKPVMEVGSADFPNARAAMN----SPLAKSLY-GVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTA------------INEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLR 715
            S  + GK  +F +  +R + I+T  TPN ++L F    G+ +   GS          N    S LA+ ++    G+  +  G DF+T+ K     W+ +KPEI   +    + G+ +      A  ++              + E+D E   +I+EL++TRIRPA+ +DGGDI+YRG+DP+TGTV LR
Sbjct:    4 SVAKLGKSPIFYLNSQRLIHIKTLTTPNENALKFLSTDGEMLQTRGSKSIVIKNTDENLINHSKLAQQIFLQCPGVESLMIGDDFLTINKDRMVHWNSIKPEIIDLLTKQLAYGEDVISKEFHAVQEEEGEGGYKINMPKFELTEEDEEVSELIEELIDTRIRPAILEDGGDIDYRGWDPKTGTVYLR 191          
The following BLAST results are available for this feature:
BLAST of DR405287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
NFU1_DROGR8.611e-4351.30NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROVI1.918e-4256.96NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROAN7.290e-4257.79NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROPS1.624e-4156.05NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROPE1.624e-4156.05NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
YH9J_SCHPO8.911e-4042.42NifU-like protein C1709.19c OS=Schizosaccharomyces... [more]
NFU1_YEAST7.341e-1831.91NifU-like protein, mitochondrial OS=Saccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240P22 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240P22 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405287 ID=DR405287; Name=DR405287; organism=Citrus sinensis; type=EST; length=716bp
GGGGAATCACAAGAGAAGAGAGCTTTCTTCAAGCTGAAGCATGAGGGGAC
TGGGACGGCTATTGCAGCGAGGTCTTTCTTCACACCGGCAGAGGCCGGGT
TTCCCCAAACAAAACGACGCCGTAGTTTATGCGTATTCCAGAACGCTGTC
GTATTTGTCAAACCCGATCACTTCTCAAAATTCCACGTTACTAAAATCTA
TTCCTCTCTCTTCTTCTGTACAATCCGGAAAATGGAATCTTTTTCGAGTG
CAGAGGAGGACAATGTTTATACAAACGCAGCCAACACCAAATCCTTCGTC
TCTTATGTTTTATCCAGGGAAGCCTGTTATGGAAGTTGGGAGTGCAGATT
TCCCGAATGCTCGCGCAGCAATGAACTCTCCATTGGCAAAATCCCTTTAC
GGGGTTGATGGTATTACTCGGGTTTTCTTTGGTTCAGATTTCATCACTGT
GACAAAATCAGAGGATACTTCTTGGGATTTACTCAAACCTGAAATTTTTG
CTGCAATTATGGACTTTTATTCGTCAGGGCAACCACTTTTTCTAGACTCA
GAAACTGCAGCAGCCAAAGACACAGCTATTAATGAGGATGACTCAGAAAC
TGTTGCAATGATCAAAGAACTCCTCGAGACCCGTATTCGGCCAGCTGTGC
AAGATGACGGTGGGGACATTGAGTACAGAGGATTTGATCCGGAAACAGGA
ACAGTCAAATTAAGAA
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