DR405244

Overview
NameDR405244
Unique NameDR405244
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405244 vs. ExPASy Swiss-Prot
Match: EF1A2_DROME (Elongation factor 1-alpha 2 OS=Drosophila melanogaster GN=Ef1alpha100E PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 2.308e-30
Identity = 60/90 (66.67%), Postives = 75/90 (83.33%), Query Frame = 1
Query:    4 GYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 273
            GY PVLDCHT+HIA KFSE+  K DRR+GK  E EPK +K+GDA ++ ++P+KP+ VE+F ++PPLGRFAVRDMRQTVAVGVIKSV  K+
Sbjct:  356 GYTPVLDCHTAHIACKFSEIKEKCDRRTGKTTETEPKAIKSGDAAIIVLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKSVNFKE 445          
BLAST of DR405244 vs. ExPASy Swiss-Prot
Match: EF1A_APIME (Elongation factor 1-alpha OS=Apis mellifera PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.014e-30
Identity = 62/90 (68.89%), Postives = 73/90 (81.11%), Query Frame = 1
Query:    4 GYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 273
            GY PVLDCHT+HIA KF+E+  K DRR+GK  E+ PK +K+GDA +V + PTKPM VE F ++PPLGRFAVRDMRQTVAVGVIKSV  KD
Sbjct:  356 GYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTKPMCVEAFQEFPPLGRFAVRDMRQTVAVGVIKSVTFKD 445          
BLAST of DR405244 vs. ExPASy Swiss-Prot
Match: EF1A_RHYAM (Elongation factor 1-alpha (Fragment) OS=Rhynchosciara americana PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 6.715e-30
Identity = 61/90 (67.78%), Postives = 74/90 (82.22%), Query Frame = 1
Query:    4 GYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 273
            GY PVLDCHT+HIA KF+E+  K+DRRSGK  E  PK +K+GDA +V + P+KP+ VE+F ++PPLGRFAVRDMRQTVAVGVIKSV  KD
Sbjct:  305 GYTPVLDCHTAHIACKFAEIKXKVDRRSGKSTEDNPKAIKSGDAAIVILQPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKSVVFKD 394          
BLAST of DR405244 vs. ExPASy Swiss-Prot
Match: EF1A_DICDI (Elongation factor 1-alpha OS=Dictyostelium discoideum GN=eef1a1 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 6.715e-30
Identity = 63/94 (67.02%), Postives = 77/94 (81.91%), Query Frame = 1
Query:    4 GYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPK---FLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 276
            GY+PVLDCHT+HIA KF+E+V K+DRR+G  + KE      LKNGDA MV++ P++PM VE+F++YPPLGRFAVRDMRQTVAVGVIKS  KK P
Sbjct:  344 GYSPVLDCHTAHIACKFTEIVDKVDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRPMCVESFTEYPPLGRFAVRDMRQTVAVGVIKSTVKKAP 437          
BLAST of DR405244 vs. ExPASy Swiss-Prot
Match: EF1A_BOMMO (Elongation factor 1-alpha OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 6.715e-30
Identity = 58/90 (64.44%), Postives = 75/90 (83.33%), Query Frame = 1
Query:    4 GYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 273
            GY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVRDMRQTVAVGVIK+V  K+
Sbjct:  356 GYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKE 445          
BLAST of DR405244 vs. ExPASy Swiss-Prot
Match: EF1A_PLAFK (Elongation factor 1-alpha OS=Plasmodium falciparum (isolate K1 / Thailand) GN=MEF-1 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.333e-29
Identity = 55/90 (61.11%), Postives = 76/90 (84.44%), Query Frame = 1
Query:    4 GYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 273
            GY P+LDCHTSHI+ KF  + +KID+RSGK +E+ PK +K+GD+ +V + P KPMVVETF++YPPLGRFA+RDMRQT+AVG+I  +++K+
Sbjct:  342 GYTPLLDCHTSHISCKFLNIDSKIDKRSGKVVEENPKAIKSGDSALVSLEPKKPMVVETFTEYPPLGRFAIRDMRQTIAVGIINQLKRKN 431          
BLAST of DR405244 vs. ExPASy Swiss-Prot
Match: EF1A_BLAHO (Elongation factor 1-alpha OS=Blastocystis hominis PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 9.696e-29
Identity = 55/85 (64.71%), Postives = 73/85 (85.88%), Query Frame = 1
Query:    4 GYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKS 258
            GY PV+DCHT+HIA KF ++++++D+R+GK L + P  +KNG + M +++P+KPM VETFSDYPPLGRFAVRDMRQTVAVG+IKS
Sbjct:  345 GYCPVVDCHTAHIACKFEKIMSEMDKRTGKVLRENPDIVKNGKSMMAQLVPSKPMCVETFSDYPPLGRFAVRDMRQTVAVGIIKS 429          
BLAST of DR405244 vs. ExPASy Swiss-Prot
Match: EF1A1_XENLA (Elongation factor 1-alpha OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 2.160e-28
Identity = 57/89 (64.04%), Postives = 71/89 (79.78%), Query Frame = 1
Query:    4 GYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 270
            GY+PV+DCHT+HI  +F+EL  KIDRR+GK+LE  P  LK+GDA ++ + P KP  VE F DYPPLGRFA RD++QTVAVGV+KSVE K
Sbjct:  359 GYSPVIDCHTAHITCQFAELQEKIDRRTGKKLEDNPGLLKSGDAAIITLKPIKPFCVERFFDYPPLGRFAARDLKQTVAVGVVKSVEHK 447          
BLAST of DR405244 vs. ExPASy Swiss-Prot
Match: EF1A2_EUPCR (Elongation factor 1-alpha 2 OS=Euplotes crassus GN=EFA2 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.235e-25
Identity = 52/89 (58.43%), Postives = 71/89 (79.78%), Query Frame = 1
Query:    4 GYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 270
            GY PVLD HT+H+A KF  L++K + R+GK +E+ PKFLKNG++G+V+++PTKP+ VE FS Y  LGRF +RDM++TVAVGVI+ V  K
Sbjct:  341 GYQPVLDIHTAHVATKFKTLLSKNEARTGKLIEEAPKFLKNGESGIVELVPTKPLCVEEFSKYAALGRFVIRDMKRTVAVGVIQEVIHK 429          
BLAST of DR405244 vs. ExPASy Swiss-Prot
Match: EF1A_METS5 (Elongation factor 1-alpha OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=tuf PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.951e-23
Identity = 48/87 (55.17%), Postives = 66/87 (75.86%), Query Frame = 1
Query:    4 GYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 264
            GY PV+  HT+ IA + SE+V ++D ++GKE EK P+F+K G++ +VK  P KP+ VE FSD+PPLGRFA+RDM +TV VGVI  V+
Sbjct:  342 GYTPVVHVHTASIACRVSEIVARLDPKTGKEAEKNPQFIKQGESAIVKFKPIKPLCVEKFSDFPPLGRFAMRDMGKTVGVGVINDVK 428          
The following BLAST results are available for this feature:
BLAST of DR405244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
EF1A2_DROME2.308e-3066.67Elongation factor 1-alpha 2 OS=Drosophila melanoga... [more]
EF1A_APIME3.014e-3068.89Elongation factor 1-alpha OS=Apis mellifera PE=3 S... [more]
EF1A_RHYAM6.715e-3067.78Elongation factor 1-alpha (Fragment) OS=Rhynchosci... [more]
EF1A_DICDI6.715e-3067.02Elongation factor 1-alpha OS=Dictyostelium discoid... [more]
EF1A_BOMMO6.715e-3064.44Elongation factor 1-alpha OS=Bombyx mori PE=2 SV=1[more]
EF1A_PLAFK3.333e-2961.11Elongation factor 1-alpha OS=Plasmodium falciparum... [more]
EF1A_BLAHO9.696e-2964.71Elongation factor 1-alpha OS=Blastocystis hominis ... [more]
EF1A1_XENLA2.160e-2864.04Elongation factor 1-alpha OS=Xenopus laevis PE=1 S... [more]
EF1A2_EUPCR2.235e-2558.43Elongation factor 1-alpha 2 OS=Euplotes crassus GN... [more]
EF1A_METS57.951e-2355.17Elongation factor 1-alpha OS=Metallosphaera sedula... [more]

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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240N14 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240N14 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405244 ID=DR405244; Name=DR405244; organism=Citrus sinensis; type=EST; length=555bp
GGGGGATATGCCCCAGTGCTTGACTGCCACACCTCCCACATTGCTGTCAA
GTTTTCTGAGCTTGTGACCAAGATTGACAGGCGATCTGGCAAGGAGCTTG
AGAAGGAGCCCAAGTTCTTGAAGAATGGAGATGCCGGAATGGTTAAGATG
ATTCCCACCAAGCCCATGGTTGTTGAGACCTTCTCCGACTACCCACCCCT
TGGTCGTTTTGCTGTTAGGGACATGCGTCAGACTGTAGCTGTTGGTGTGA
TCAAGAGTGTTGAAAAGAAGGATCCATCGGGTGCCAAGGTCACCAAGTCT
GCTGCCAAGAAGAAGTGAGGAGTTTTTTGGGATCTATCTGCTATAGTTAG
CTTTTATTTTCTCTGTTTATGCTATTTTTGTCATGTTTTAGTTTGTTTTA
CGGTAGACTTCATTTTAATTCTCTGAATTTGGTTTTATATCATTGAGTTT
TTTTTGGTAAGTTGATAAACCAGTTTTTGGATGTCAAACATTTTGTTTCA
AGATTAGCCGTTAGTGCTCGATTTTGAAAAAAAAAAAAAAAAAAAAAAAA
AAAAA
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