DR405116

Overview
NameDR405116
Unique NameDR405116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length408
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_PANGI (Photosystem II reaction center protein I OS=Panax ginseng GN=psbI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLFIFGFLSND GRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_OLIPU (Photosystem II reaction center protein I OS=Olimarabidopsis pumila GN=psbI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLFIFGFLSND GRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_OENPA (Photosystem II reaction center protein I OS=Oenothera parviflora GN=psbI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLFIFGFLSND GRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_OENGL (Photosystem II reaction center protein I OS=Oenothera glazioviana GN=psbI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLFIFGFLSND GRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_OENEH (Photosystem II reaction center protein I OS=Oenothera elata subsp. hookeri GN=psbI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLFIFGFLSND GRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_OENBI (Photosystem II reaction center protein I OS=Oenothera biennis GN=psbI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLFIFGFLSND GRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_OENAR (Photosystem II reaction center protein I OS=Oenothera argillicola GN=psbI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLFIFGFLSND GRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_NYMAL (Photosystem II reaction center protein I OS=Nymphaea alba GN=psbI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLFIFGFLSND GRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_NICTO (Photosystem II reaction center protein I OS=Nicotiana tomentosiformis GN=psbI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLFIFGFLSND GRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_NICSY (Photosystem II reaction center protein I OS=Nicotiana sylvestris GN=psbI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLFIFGFLSND GRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
The following BLAST results are available for this feature:
BLAST of DR405116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
PSBI_PANGI3.056e-1294.44Photosystem II reaction center protein I OS=Panax ... [more]
PSBI_OLIPU3.056e-1294.44Photosystem II reaction center protein I OS=Olimar... [more]
PSBI_OENPA3.056e-1294.44Photosystem II reaction center protein I OS=Oenoth... [more]
PSBI_OENGL3.056e-1294.44Photosystem II reaction center protein I OS=Oenoth... [more]
PSBI_OENEH3.056e-1294.44Photosystem II reaction center protein I OS=Oenoth... [more]
PSBI_OENBI3.056e-1294.44Photosystem II reaction center protein I OS=Oenoth... [more]
PSBI_OENAR3.056e-1294.44Photosystem II reaction center protein I OS=Oenoth... [more]
PSBI_NYMAL3.056e-1294.44Photosystem II reaction center protein I OS=Nympha... [more]
PSBI_NICTO3.056e-1294.44Photosystem II reaction center protein I OS=Nicoti... [more]
PSBI_NICSY3.056e-1294.44Photosystem II reaction center protein I OS=Nicoti... [more]

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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240G22 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240G22 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405116 ID=DR405116; Name=DR405116; organism=Citrus sinensis; type=EST; length=408bp
GGGGAATCTATTCTCTTTTCCCTTTTCCCAAAAACCTGATTTGGAGATTG
TGTNATGCTTNNNCTCAAACTCTTTGTTTACACCGTAGTGATATTCTTTG
TTTCGCTCTTCATCTTCGGATTCCTGTCTAATGATTCAGGGCGTAATCCC
GGACGCGAAGAATAAAAAAGGAAGGAGTTGCTTACTTTATTCGTATAAAC
GTTCTTAGGATTTTTTGATTCCCAGTTACTATTAAAAATAAAGTAAAAGT
GTTCGCTAAAGTTAAATTTGAAAAATACCAAGCCATCGCCCGAAACGGAA
AGAGAGGGATTCGAACCCTCGGTACGAAGAACTCGTACACCGGATTAGCA
ATCCGACGCTTTAATCCACTCAGCCATCTCTCCTAATTGAAAATAAAAAA
AAAAAAAA
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