DR405116

Overview
NameDR405116
Unique NameDR405116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length408
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_NASOF (Photosystem II reaction center protein I OS=Nasturtium officinale GN=psbI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLFIFGFLSND GRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_NANDO (Photosystem II reaction center protein I OS=Nandina domestica GN=psbI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLFIFGFLSND GRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_MORIN (Photosystem II reaction center protein I OS=Morus indica GN=psbI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLFIFGFLSND GRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_MANES (Photosystem II reaction center protein I OS=Manihot esculenta GN=psbI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLFIFGFLSND GRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_MAIZE (Photosystem II reaction center protein I OS=Zea mays GN=psbI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLFIFGFLSND GRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_LOTJA (Photosystem II reaction center protein I OS=Lotus japonicus GN=psbI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLFIFGFLSND GRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_LOLPR (Photosystem II reaction center protein I OS=Lolium perenne GN=psbI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLFIFGFLSND GRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_LOBMA (Photosystem II reaction center protein I OS=Lobularia maritima GN=psbI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLFIFGFLSND GRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_LIRTU (Photosystem II reaction center protein I OS=Liriodendron tulipifera GN=psbI PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLFIFGFLSND GRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_LEMMI (Photosystem II reaction center protein I OS=Lemna minor GN=psbI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLFIFGFLSND GRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
The following BLAST results are available for this feature:
BLAST of DR405116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
PSBI_NASOF3.056e-1294.44Photosystem II reaction center protein I OS=Nastur... [more]
PSBI_NANDO3.056e-1294.44Photosystem II reaction center protein I OS=Nandin... [more]
PSBI_MORIN3.056e-1294.44Photosystem II reaction center protein I OS=Morus ... [more]
PSBI_MANES3.056e-1294.44Photosystem II reaction center protein I OS=Maniho... [more]
PSBI_MAIZE3.056e-1294.44Photosystem II reaction center protein I OS=Zea ma... [more]
PSBI_LOTJA3.056e-1294.44Photosystem II reaction center protein I OS=Lotus ... [more]
PSBI_LOLPR3.056e-1294.44Photosystem II reaction center protein I OS=Lolium... [more]
PSBI_LOBMA3.056e-1294.44Photosystem II reaction center protein I OS=Lobula... [more]
PSBI_LIRTU3.056e-1294.44Photosystem II reaction center protein I OS=Liriod... [more]
PSBI_LEMMI3.056e-1294.44Photosystem II reaction center protein I OS=Lemna ... [more]

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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240G22 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240G22 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405116 ID=DR405116; Name=DR405116; organism=Citrus sinensis; type=EST; length=408bp
GGGGAATCTATTCTCTTTTCCCTTTTCCCAAAAACCTGATTTGGAGATTG
TGTNATGCTTNNNCTCAAACTCTTTGTTTACACCGTAGTGATATTCTTTG
TTTCGCTCTTCATCTTCGGATTCCTGTCTAATGATTCAGGGCGTAATCCC
GGACGCGAAGAATAAAAAAGGAAGGAGTTGCTTACTTTATTCGTATAAAC
GTTCTTAGGATTTTTTGATTCCCAGTTACTATTAAAAATAAAGTAAAAGT
GTTCGCTAAAGTTAAATTTGAAAAATACCAAGCCATCGCCCGAAACGGAA
AGAGAGGGATTCGAACCCTCGGTACGAAGAACTCGTACACCGGATTAGCA
ATCCGACGCTTTAATCCACTCAGCCATCTCTCCTAATTGAAAATAAAAAA
AAAAAAAA
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