DR405116

Overview
NameDR405116
Unique NameDR405116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length408
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_AETGR (Photosystem II reaction center protein I OS=Aethionema grandiflora GN=psbI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLFIFGFLSND GRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_AETCO (Photosystem II reaction center protein I OS=Aethionema cordifolium GN=psbI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLFIFGFLSND GRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_ACOCL (Photosystem II reaction center protein I OS=Acorus calamus GN=psbI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLFIFGFLSND GRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_ACOAM (Photosystem II reaction center protein I OS=Acorus americanus GN=psbI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLFIFGFLSND GRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_SILLA (Photosystem II reaction center protein I OS=Silene latifolia GN=psbI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.809e-12
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLFIFGFLSND GRNPGRE+
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRED 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_PIPCE (Photosystem II reaction center protein I OS=Piper cenocladum GN=psbI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.809e-12
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLFIFGFLSND GRNPGRE+
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRED 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_ORYSJ (Photosystem II reaction center protein I OS=Oryza sativa subsp. japonica GN=psbI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.809e-12
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLFIFGFLSND GRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRDE 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_ORYSI (Photosystem II reaction center protein I OS=Oryza sativa subsp. indica GN=psbI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.809e-12
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLFIFGFLSND GRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRDE 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_ORYSA (Photosystem II reaction center protein I OS=Oryza sativa GN=psbI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.809e-12
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLFIFGFLSND GRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRDE 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_ORYNI (Photosystem II reaction center protein I OS=Oryza nivara GN=psbI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.809e-12
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLFIFGFLSND GRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRDE 36          
The following BLAST results are available for this feature:
BLAST of DR405116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
PSBI_AETGR3.056e-1294.44Photosystem II reaction center protein I OS=Aethio... [more]
PSBI_AETCO3.056e-1294.44Photosystem II reaction center protein I OS=Aethio... [more]
PSBI_ACOCL3.056e-1294.44Photosystem II reaction center protein I OS=Acorus... [more]
PSBI_ACOAM3.056e-1294.44Photosystem II reaction center protein I OS=Acorus... [more]
PSBI_SILLA6.809e-1291.67Photosystem II reaction center protein I OS=Silene... [more]
PSBI_PIPCE6.809e-1291.67Photosystem II reaction center protein I OS=Piper ... [more]
PSBI_ORYSJ6.809e-1291.67Photosystem II reaction center protein I OS=Oryza ... [more]
PSBI_ORYSI6.809e-1291.67Photosystem II reaction center protein I OS=Oryza ... [more]
PSBI_ORYSA6.809e-1291.67Photosystem II reaction center protein I OS=Oryza ... [more]
PSBI_ORYNI6.809e-1291.67Photosystem II reaction center protein I OS=Oryza ... [more]

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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240G22 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240G22 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405116 ID=DR405116; Name=DR405116; organism=Citrus sinensis; type=EST; length=408bp
GGGGAATCTATTCTCTTTTCCCTTTTCCCAAAAACCTGATTTGGAGATTG
TGTNATGCTTNNNCTCAAACTCTTTGTTTACACCGTAGTGATATTCTTTG
TTTCGCTCTTCATCTTCGGATTCCTGTCTAATGATTCAGGGCGTAATCCC
GGACGCGAAGAATAAAAAAGGAAGGAGTTGCTTACTTTATTCGTATAAAC
GTTCTTAGGATTTTTTGATTCCCAGTTACTATTAAAAATAAAGTAAAAGT
GTTCGCTAAAGTTAAATTTGAAAAATACCAAGCCATCGCCCGAAACGGAA
AGAGAGGGATTCGAACCCTCGGTACGAAGAACTCGTACACCGGATTAGCA
ATCCGACGCTTTAATCCACTCAGCCATCTCTCCTAATTGAAAATAAAAAA
AAAAAAAA
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