DR405116

Overview
NameDR405116
Unique NameDR405116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length408
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_AMBTC (Photosystem II reaction center protein I OS=Amborella trichopoda GN=psbI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.809e-12
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLFIFGFLSND GRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRDE 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_CRYJA (Photosystem II reaction center protein I OS=Cryptomeria japonica GN=psbI PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.892e-12
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLFIFGFLSND GRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRKE 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_PHYPA (Photosystem II reaction center protein I OS=Physcomitrella patens GN=psbI PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.161e-11
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLF+FGFLSND GRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFVFGFLSNDPGRNPGRKE 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_MARPO (Photosystem II reaction center protein I OS=Marchantia polymorpha GN=psbI PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.161e-11
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLF+FGFLSND GRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFVFGFLSNDPGRNPGRKE 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_HUPLU (Photosystem II reaction center protein I OS=Huperzia lucidula GN=psbI PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.161e-11
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLF+FGFLSND GRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFVFGFLSNDPGRNPGRKE 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_CHAVU (Photosystem II reaction center protein I OS=Chara vulgaris GN=psbI PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.161e-11
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFF+SLFIFGFLSND GRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFISLFIFGFLSNDPGRNPGRKE 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_ANGEV (Photosystem II reaction center protein I OS=Angiopteris evecta GN=psbI PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.161e-11
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLF+FGFLSND GRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFVFGFLSNDPGRNPGRKE 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_LEPVR (Photosystem II reaction center protein I OS=Lepidium virginicum GN=psbI PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.981e-11
Identity = 33/36 (91.67%), Postives = 33/36 (91.67%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLF FGFLSND GRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFKFGFLSNDPGRNPGREE 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_CYCTA (Photosystem II reaction center protein I OS=Cycas taitungensis GN=psbI PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.587e-11
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            M  LKLFVYTVVIFFVSLFIFGFLSND GRNPGR+E
Sbjct:    1 MFTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRKE 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_JASNU (Photosystem II reaction center protein I OS=Jasminum nudiflorum GN=psbI PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.379e-11
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLFIFGFLSND GRNPG+ E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGQRE 36          
The following BLAST results are available for this feature:
BLAST of DR405116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
PSBI_AMBTC6.809e-1291.67Photosystem II reaction center protein I OS=Ambore... [more]
PSBI_CRYJA8.892e-1291.67Photosystem II reaction center protein I OS=Crypto... [more]
PSBI_PHYPA1.161e-1188.89Photosystem II reaction center protein I OS=Physco... [more]
PSBI_MARPO1.161e-1188.89Photosystem II reaction center protein I OS=Marcha... [more]
PSBI_HUPLU1.161e-1188.89Photosystem II reaction center protein I OS=Huperz... [more]
PSBI_CHAVU1.161e-1188.89Photosystem II reaction center protein I OS=Chara ... [more]
PSBI_ANGEV1.161e-1188.89Photosystem II reaction center protein I OS=Angiop... [more]
PSBI_LEPVR1.981e-1191.67Photosystem II reaction center protein I OS=Lepidi... [more]
PSBI_CYCTA2.587e-1188.89Photosystem II reaction center protein I OS=Cycas ... [more]
PSBI_JASNU3.379e-1188.89Photosystem II reaction center protein I OS=Jasmin... [more]

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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240G22 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240G22 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405116 ID=DR405116; Name=DR405116; organism=Citrus sinensis; type=EST; length=408bp
GGGGAATCTATTCTCTTTTCCCTTTTCCCAAAAACCTGATTTGGAGATTG
TGTNATGCTTNNNCTCAAACTCTTTGTTTACACCGTAGTGATATTCTTTG
TTTCGCTCTTCATCTTCGGATTCCTGTCTAATGATTCAGGGCGTAATCCC
GGACGCGAAGAATAAAAAAGGAAGGAGTTGCTTACTTTATTCGTATAAAC
GTTCTTAGGATTTTTTGATTCCCAGTTACTATTAAAAATAAAGTAAAAGT
GTTCGCTAAAGTTAAATTTGAAAAATACCAAGCCATCGCCCGAAACGGAA
AGAGAGGGATTCGAACCCTCGGTACGAAGAACTCGTACACCGGATTAGCA
ATCCGACGCTTTAATCCACTCAGCCATCTCTCCTAATTGAAAATAAAAAA
AAAAAAAA
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