DR405098

Overview
NameDR405098
Unique NameDR405098
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405098 vs. ExPASy Swiss-Prot
Match: RL14_METS3 (50S ribosomal protein L14P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.322e-32
Identity = 65/125 (52.00%), Postives = 91/125 (72.80%), Query Frame = 3
Query:   75 MSLGLPVXXTVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 449
            +S  LP+  T+ C DNTGA+ + IISVKG KG   RL  A VGD+V+A+VKKG  D+R++V+ AV++RQ+K + R DG+ + FEDNA VI+ P+G +KGS + GP+ KE AD WP + SAA+ +V
Sbjct:    8 VSKALPIGATLQCVDNTGAREIQIISVKGFKGVRRRLDVAGVGDLVVASVKKGTADMRREVVNAVVIRQKKEYMRADGLRVKFEDNAAVIITPEGILKGSEVRGPVAKEAADRWPSVGSAASILV 132          
BLAST of DR405098 vs. ExPASy Swiss-Prot
Match: RL14_METJA (50S ribosomal protein L14P OS=Methanocaldococcus jannaschii GN=rpl14p PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.505e-31
Identity = 69/121 (57.02%), Postives = 84/121 (69.42%), Query Frame = 3
Query:   87 LPVXXTVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 449
            LPV     CADNTGAK + II+V+  KG   RLP+A VGDMV+ TVKKG P++RK+V+PAV++RQRK  RR DG  + F DNA VIV P G  KGS I GP+ KE A+ WP IA  A  I+
Sbjct:   12 LPVGARCICADNTGAKEVEIIAVRNYKGVARRLPTARVGDMVIVTVKKGTPEMRKQVLPAVVIRQRKEIRRPDGTRVKFADNAVVIVTPDGNPKGSDIKGPVAKEAAERWPGIARIAKIII 132          
BLAST of DR405098 vs. ExPASy Swiss-Prot
Match: RL14_SULTO (50S ribosomal protein L14P OS=Sulfolobus tokodaii GN=rpl14p PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.567e-31
Identity = 67/130 (51.54%), Postives = 89/130 (68.46%), Query Frame = 3
Query:   60 GIKFGMSLGLPVXXTVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 449
            G + G++ GL    TV  ADN+GAK   II + G KG L R+P A + D+VM +V+KG P++RK+   AVIVRQR P+RR DG ++ FEDNA VIVNP G  KG+ I GPI KE A+ WP++AS A  ++
Sbjct:   12 GSRKGLTPGLQHYTTVTVADNSGAKEAVIIGIYGYKGVLRRIPFANIADLVMVSVRKGTPEVRKQKFKAVIVRQRMPFRRPDGTWIAFEDNAVVIVNPDGTPKGTEIRGPIAKEAAERWPKVASIATMVI 141          
BLAST of DR405098 vs. ExPASy Swiss-Prot
Match: RL14_METS5 (50S ribosomal protein L14P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.754e-31
Identity = 65/130 (50.00%), Postives = 90/130 (69.23%), Query Frame = 3
Query:   60 GIKFGMSLGLPVXXTVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 449
            G + G++  +     VN +DN+GAK   IISV G +G L R+P A VGD+VM +V+KG PD+RK+   AV++RQR P+RR DG ++ F+DNA VIVNP G  KG+ I GP+ +E A+ WP++AS A  IV
Sbjct:    9 GSRKGLTPAVQNYTMVNVSDNSGAKEAMIISVFGYRGALRRVPYANVGDLVMVSVRKGAPDVRKQKFKAVVIRQRMPFRRPDGTWISFDDNAVVIVNPDGTAKGTEIRGPVAREAAERWPKVASLATLIV 138          
BLAST of DR405098 vs. ExPASy Swiss-Prot
Match: RL14_KORCO (50S ribosomal protein L14P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.664e-30
Identity = 66/130 (50.77%), Postives = 87/130 (66.92%), Query Frame = 3
Query:   60 GIKFGMSLGLPVXXTVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 449
            G+K  ++ GLPV   + CADNTGAK L II V G KGR +R+P+A VGDMV   VK+GK DL  K   A++VRQR P+RRK+G ++ FEDNA V+VN  G  +GS   GPI KE  + WP ++  +  +V
Sbjct:   12 GVKPKITHGLPVRARLKCADNTGAKLLMIIGVHGYKGRKDRVPTASVGDMVTVVVKRGKYDLMHKPFKAIVVRQRMPYRRKNGQWVVFEDNAAVLVNDDGTPRGSEFRGPIAKEAIERWPSLSVISAQVV 141          
BLAST of DR405098 vs. ExPASy Swiss-Prot
Match: RL14_METVS (50S ribosomal protein L14P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.838e-30
Identity = 63/120 (52.50%), Postives = 84/120 (70.00%), Query Frame = 3
Query:   87 LPVXXTVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 446
            LP    + CADNTGAK L +I+VK   G + RLPSA VG +V  +VKKG P++RK+V+PA+I+RQ+K ++R DG  + FEDNA VIV P+G  KGS I GP+ KE A+ WP ++  A  I
Sbjct:   12 LPNGARLVCADNTGAKELEVIAVKNYSGTVRRLPSAGVGQIVFVSVKKGTPEMRKQVLPAIIIRQKKEYKRADGTRVKFEDNAAVIVTPEGTPKGSDIKGPVSKEAAERWPGVSRLAKII 131          
BLAST of DR405098 vs. ExPASy Swiss-Prot
Match: RL14_METVA (50S ribosomal protein L14P OS=Methanococcus vannielii GN=rpl14p PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.838e-30
Identity = 63/120 (52.50%), Postives = 84/120 (70.00%), Query Frame = 3
Query:   87 LPVXXTVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 446
            LP    + CADNTGAK L +I+VK   G + RLPSA VG +V  +VKKG P++RK+V+PA+I+RQ+K ++R DG  + FEDNA VIV P+G  KGS I GP+ KE A+ WP ++  A  I
Sbjct:   12 LPNGARLVCADNTGAKELEVIAVKNYSGTVRRLPSAGVGQIVFVSVKKGTPEMRKQVLPAIIIRQKKEYKRADGTRVKFEDNAAVIVTPEGTPKGSDIKGPVSKEAAERWPGVSRLAKII 131          
BLAST of DR405098 vs. ExPASy Swiss-Prot
Match: RL14_SULSO (50S ribosomal protein L14P OS=Sulfolobus solfataricus GN=rpl14p PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.707e-30
Identity = 65/130 (50.00%), Postives = 87/130 (66.92%), Query Frame = 3
Query:   60 GIKFGMSLGLPVXXTVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 449
            G + G++  L     VN ADN+G K   II V G +G L R+P A + DMVM ++KKG P++RK+   AVIVRQR P+RR DG ++ FEDNA VI+NP G  KG+ + GPI +E A+ WP+IAS A  +V
Sbjct:    9 GSRKGLTPALQHYSVVNVADNSGGKEAMIIGVYGYRGVLRRVPFANIADMVMVSIKKGTPEVRKQKFRAVIVRQRMPYRRPDGTWISFEDNAVVIINPDGTPKGTEVRGPIAREAAERWPKIASLATLVV 138          
BLAST of DR405098 vs. ExPASy Swiss-Prot
Match: RL14_METMP (50S ribosomal protein L14P OS=Methanococcus maripaludis GN=rpl14p PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.707e-30
Identity = 64/129 (49.61%), Postives = 86/129 (66.67%), Query Frame = 3
Query:   60 GIKFGMSLGLPVXXTVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 446
            G+   +   LP    + CADNTGAK L +I+VK   G + RLP+  VG MV  +VKKG P++RK+V+PA+I+RQ+K +RR DG  + FEDNA VIV P+G  KGS I GP+ KE A+ WP ++  A  I
Sbjct:    3 GLGSNIVRSLPNGARLVCADNTGAKELEVIAVKNYVGTVRRLPAGGVGHMVFVSVKKGTPEMRKQVLPAIIIRQKKEYRRADGTRVKFEDNAAVIVTPEGTPKGSEIKGPVSKEAAERWPGVSRLAKII 131          
BLAST of DR405098 vs. ExPASy Swiss-Prot
Match: RL14_PYRFU (50S ribosomal protein L14P OS=Pyrococcus furiosus GN=rpl14p PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.841e-30
Identity = 71/141 (50.35%), Postives = 94/141 (66.67%), Query Frame = 3
Query:   30 MSKRGRGXXAGIK-FGMSLGLPVXXTVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 449
            M+K+G G   G+     +  LPV   +  ADN+GAK + II V    G   RL SA VGDMV+ATVKKG+PD+R +V+ AVI+RQRK +RR DG+ + FEDNA VIV P+G  +G+ I GP+ +E A+ W RI S A+ IV
Sbjct:    1 MAKKGAGATRGVSAVRPTRALPVGAYLTVADNSGAKVIQIIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDMRHQVVRAVIIRQRKEYRRLDGMRVKFEDNAAVIVTPEGVPRGTEIRGPVAREAAERWVRIGSIASIIV 141          
The following BLAST results are available for this feature:
BLAST of DR405098 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 439
Match NameE-valueIdentityDescription
RL14_METS32.322e-3252.0050S ribosomal protein L14P OS=Methanobrevibacter s... [more]
RL14_METJA1.505e-3157.0250S ribosomal protein L14P OS=Methanocaldococcus j... [more]
RL14_SULTO2.567e-3151.5450S ribosomal protein L14P OS=Sulfolobus tokodaii ... [more]
RL14_METS59.754e-3150.0050S ribosomal protein L14P OS=Metallosphaera sedul... [more]
RL14_KORCO1.664e-3050.7750S ribosomal protein L14P OS=Korarchaeum cryptofi... [more]
RL14_METVS2.838e-3052.5050S ribosomal protein L14P OS=Methanococcus vannie... [more]
RL14_METVA2.838e-3052.5050S ribosomal protein L14P OS=Methanococcus vannie... [more]
RL14_SULSO3.707e-3050.0050S ribosomal protein L14P OS=Sulfolobus solfatari... [more]
RL14_METMP3.707e-3049.6150S ribosomal protein L14P OS=Methanococcus maripa... [more]
RL14_PYRFU4.841e-3050.3550S ribosomal protein L14P OS=Pyrococcus furiosus ... [more]

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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240F22 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240F22 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405098 ID=DR405098; Name=DR405098; organism=Citrus sinensis; type=EST; length=619bp
GGGGATTGCTGTCACCTTCATCTGCGAAAATGTCGAAGCGAGGACGTGGA
GNNNNNGCAGGTATCAAGTTCGGGATGTCACTGGGTTTGCCAGTGGNNNC
AACTGTGAACTGTGCTGACAACACTGGGGCAAAGAACCTTTACATCATCT
CAGTTAAGGGAATCAAAGGTCGCCTCAACCGTTTGCCGTCTGCCTGTGTT
GGAGACATGGTTATGGCTACCGTGAAGAAAGGGAAGCCTGATCTTAGGAA
GAAGGTGATGCCCGCCGTCATTGTAAGGCAGCGCAAGCCATGGCGCAGAA
AGGATGGTGTCTTCATGTACTTTGAAGATAATGCTGGTGTTATTGTGAAT
CCAAAGGGAGAAATGAAGGGTTCTGCCATCACCGGTCCAATTGGTAAAGA
GTGTGCTGATTTGTGGCCGAGAATTGCAAGTGCAGCCAATGCTATCGTTT
AAGACGTTCAAGACCGATAACCTATATCATCCTTTTTGTTGCACTAAAAA
GAAATCTAGTGAAGTTTCATAGTAGGAAGGAGTAAAGCTTTTCTGTGAAC
TTTCTGTATGATTTTGTTATTCTAGTTTTGTAAGTGGTATGAAAGTTTGG
AGTTTTGTTGAAAAAAAAA
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