DR405027 | Citrus Genome Database

Overview


Name	DR405027
Unique Name	DR405027
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	666

Libraries


Library Name	Type
Developing fruit albedo at 165 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DR405027 vs. ExPASy Swiss-Prot
Match: CATA2_SOLLC (Catalase isozyme 2 OS=Solanum lycopersicum GN=CAT2 PE=2 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 5.436e-88
Identity = 128/144 (88.89%), Postives = 139/144 (96.53%), Query Frame = 3

Query:  111 MDPYKFRPASSFNAPFFTTNSGAPVWNNNSSMTIGPRGPILLEDYHLVEKLANFDRERIPERVVHARGAGAKGFLEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFF 542
            MDPYK+RP+S+FN+PF TTNSGAPV+NNNSS+T+G RGP+LLEDYHLVEKLANFDRERI ERVVHARGA AKGF EVTHD+++LTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFF
Sbjct:    1 MDPYKYRPSSAFNSPFCTTNSGAPVFNNNSSLTVGARGPVLLEDYHLVEKLANFDRERIAERVVHARGASAKGFFEVTHDIAHLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFF 144

HSP 2 Score: 70.8626 bits (172), Expect = 5.436e-88
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = 1

Query:  532 PSFFVRDGMKFPDMVHALKPNPKSHIQENWRI 627
            P FF+RDGMKFPDMVHALKPNPKSHIQENWR+
Sbjct:  141 PVFFIRDGMKFPDMVHALKPNPKSHIQENWRV 172

HSP 3 Score: 23.0978 bits (48), Expect = 5.436e-88
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 2

Query:  629 VDFFSHXPEXXH 664
            +DFFSH PE  H
Sbjct:  173 LDFFSHHPESLH 184

[Close]

BLAST of DR405027 vs. ExPASy Swiss-Prot
Match: CATA1_CUCPE (Catalase isozyme 1 OS=Cucurbita pepo GN=CAT1 PE=2 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 7.480e-88
Identity = 133/144 (92.36%), Postives = 141/144 (97.92%), Query Frame = 3

Query:  111 MDPYKFRPASSFNAPFFTTNSGAPVWNNNSSMTIGPRGPILLEDYHLVEKLANFDRERIPERVVHARGAGAKGFLEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFF 542
            MDPY+ RP+S+FNAPF+TTNSGAPVWNNNSSMT+GPRGPILLEDYHLVEKLANFDRERIPERVVHARGA AKGF EVTHD++NL+CADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFF
Sbjct:    1 MDPYRHRPSSAFNAPFWTTNSGAPVWNNNSSMTVGPRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDITNLSCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFF 144

HSP 2 Score: 60.4622 bits (145), Expect = 7.480e-88
Identity = 26/32 (81.25%), Postives = 27/32 (84.38%), Query Frame = 1

Query:  532 PSFFVRDGMKFPDMVHALKPNPKSHIQENWRI 627
            P FF+RDGMKF   VH LKPNPKSHIQENWRI
Sbjct:  141 PVFFIRDGMKFTRHVHPLKPNPKSHIQENWRI 172

[Close]

BLAST of DR405027 vs. ExPASy Swiss-Prot
Match: CATA_PEA (Catalase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 3.686e-87
Identity = 130/144 (90.28%), Postives = 139/144 (96.53%), Query Frame = 3

Query:  111 MDPYKFRPASSFNAPFFTTNSGAPVWNNNSSMTIGPRGPILLEDYHLVEKLANFDRERIPERVVHARGAGAKGFLEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFF 542
            MDPYK RP+S+FN+PF+TTNSGAPVWNNNSS+T+G RGPILLEDYHLVEKLA FDRERIPERVVHARGA AKGF EVTHD+S+LTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGN+DLVGNNFPVFF
Sbjct:    1 MDPYKHRPSSAFNSPFWTTNSGAPVWNNNSSLTVGSRGPILLEDYHLVEKLAQFDRERIPERVVHARGASAKGFFEVTHDISHLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNYDLVGNNFPVFF 144

HSP 2 Score: 65.0846 bits (157), Expect = 3.686e-87
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 1

Query:  532 PSFFVRDGMKFPDMVHALKPNPKSHIQENWRI 627
            P FFV DGM FPDMVHALKPNP++HIQENWRI
Sbjct:  141 PVFFVHDGMNFPDMVHALKPNPQTHIQENWRI 172

[Close]

BLAST of DR405027 vs. ExPASy Swiss-Prot
Match: CATA1_ARATH (Catalase-1 OS=Arabidopsis thaliana GN=CAT1 PE=1 SV=3)

HSP 1 Score: 270.011 bits (689), Expect = 4.516e-87
Identity = 126/144 (87.50%), Postives = 136/144 (94.44%), Query Frame = 3

Query:  111 MDPYKFRPASSFNAPFFTTNSGAPVWNNNSSMTIGPRGPILLEDYHLVEKLANFDRERIPERVVHARGAGAKGFLEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFF 542
            MDPY+ RP+S+ ++PFFTTNSGAPVWNNNSS+T+G RGPILLEDYHL+EKLANFDRERIPERVVHARGA AKGF EVTHD++ LT ADFLR PGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFF
Sbjct:    1 MDPYRVRPSSAHDSPFFTTNSGAPVWNNNSSLTVGTRGPILLEDYHLLEKLANFDRERIPERVVHARGASAKGFFEVTHDITQLTSADFLRGPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFF 144

HSP 2 Score: 71.633 bits (174), Expect = 4.516e-87
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 1

Query:  532 PSFFVRDGMKFPDMVHALKPNPKSHIQENWRI 627
            P FFVRDGMKFPDMVHALKPNPKSHIQENWRI
Sbjct:  141 PVFFVRDGMKFPDMVHALKPNPKSHIQENWRI 172

HSP 3 Score: 23.0978 bits (48), Expect = 4.516e-87
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 2

Query:  629 VDFFSHXPEXXH 664
            +DFFSH PE  H
Sbjct:  173 LDFFSHHPESLH 184

[Close]

BLAST of DR405027 vs. ExPASy Swiss-Prot
Match: CATA_HELAN (Catalase OS=Helianthus annuus PE=2 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 1.392e-86
Identity = 128/144 (88.89%), Postives = 139/144 (96.53%), Query Frame = 3

Query:  111 MDPYKFRPASSFNAPFFTTNSGAPVWNNNSSMTIGPRGPILLEDYHLVEKLANFDRERIPERVVHARGAGAKGFLEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFF 542
            MDPYK+R +S++NAPF+TTNSGAPV+NNN+S+T+G RGPILLEDYHLVEKLANFDRERIPERVVHARGA AKGF EVTHD++ LTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFF
Sbjct:    1 MDPYKYRSSSAYNAPFWTTNSGAPVYNNNNSLTVGSRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDITALTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFF 144

HSP 2 Score: 68.1662 bits (165), Expect = 1.392e-86
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 1

Query:  532 PSFFVRDGMKFPDMVHALKPNPKSHIQENWRI 627
            P FF+RDGMKFPDMVH+LKPNPKSHIQE+WRI
Sbjct:  141 PVFFIRDGMKFPDMVHSLKPNPKSHIQEDWRI 172

[Close]

BLAST of DR405027 vs. ExPASy Swiss-Prot
Match: CATA1_MAIZE (Catalase isozyme 1 OS=Zea mays GN=CAT1 PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 3.115e-85
Identity = 126/144 (87.50%), Postives = 135/144 (93.75%), Query Frame = 3

Query:  111 MDPYKFRPASSFNAPFFTTNSGAPVWNNNSSMTIGPRGPILLEDYHLVEKLANFDRERIPERVVHARGAGAKGFLEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFF 542
            MDPYK RP+S  N+ F+TTNSGAPVWNNNS++T+G RGPILLEDYHL+EKLA FDRERIPERVVHARGA AKGF EVTHDVS+LTCADFLRAPGVQTPVIVRFSTV+HERGSPETLRDPRGFAVKFYTREGNFDLVGNN PVFF
Sbjct:    1 MDPYKHRPSSGSNSSFWTTNSGAPVWNNNSALTVGQRGPILLEDYHLIEKLAQFDRERIPERVVHARGASAKGFFEVTHDVSHLTCADFLRAPGVQTPVIVRFSTVVHERGSPETLRDPRGFAVKFYTREGNFDLVGNNMPVFF 144

HSP 2 Score: 65.0846 bits (157), Expect = 3.115e-85
Identity = 26/32 (81.25%), Postives = 30/32 (93.75%), Query Frame = 1

Query:  532 PSFFVRDGMKFPDMVHALKPNPKSHIQENWRI 627
            P FF+RDGMKFPDMVHA KPNPK+++QENWRI
Sbjct:  141 PVFFIRDGMKFPDMVHAFKPNPKTNLQENWRI 172

HSP 3 Score: 24.2534 bits (51), Expect = 3.115e-85
Identity = 9/12 (75.00%), Postives = 9/12 (75.00%), Query Frame = 2

Query:  629 VDFFSHXPEXXH 664
            VDFFSH PE  H
Sbjct:  173 VDFFSHHPESLH 184

[Close]

BLAST of DR405027 vs. ExPASy Swiss-Prot
Match: CATA2_ORYSJ (Catalase isozyme B OS=Oryza sativa subsp. japonica GN=CATB PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 1.985e-84
Identity = 125/144 (86.81%), Postives = 135/144 (93.75%), Query Frame = 3

Query:  111 MDPYKFRPASSFNAPFFTTNSGAPVWNNNSSMTIGPRGPILLEDYHLVEKLANFDRERIPERVVHARGAGAKGFLEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFF 542
            MDPYK RP+S  N+ F+TTNSGAPVWNNNS++T+G RGPILLEDYHL+EKLA FDRERIPERVVHARGA AKGF EVTHD+S+LTCADFLRAPGVQTPVIVRFSTV+HERGSPETLRDPRGFAVKFYTREGNFDLVGNN PVFF
Sbjct:    1 MDPYKHRPSSGSNSTFWTTNSGAPVWNNNSALTVGERGPILLEDYHLIEKLAQFDRERIPERVVHARGASAKGFFEVTHDISHLTCADFLRAPGVQTPVIVRFSTVVHERGSPETLRDPRGFAVKFYTREGNFDLVGNNMPVFF 144

HSP 2 Score: 62.7734 bits (151), Expect = 1.985e-84
Identity = 25/32 (78.12%), Postives = 30/32 (93.75%), Query Frame = 1

Query:  532 PSFFVRDGMKFPDMVHALKPNPKSHIQENWRI 627
            P FF+RDGMKFPDMVHA KP+PK+++QENWRI
Sbjct:  141 PVFFIRDGMKFPDMVHAFKPSPKTNMQENWRI 172

HSP 3 Score: 24.2534 bits (51), Expect = 1.985e-84
Identity = 9/12 (75.00%), Postives = 9/12 (75.00%), Query Frame = 2

Query:  629 VDFFSHXPEXXH 664
            VDFFSH PE  H
Sbjct:  173 VDFFSHHPESLH 184

[Close]

BLAST of DR405027 vs. ExPASy Swiss-Prot
Match: CATA2_ORYSI (Catalase isozyme B OS=Oryza sativa subsp. indica GN=CATB PE=2 SV=2)

HSP 1 Score: 268.855 bits (686), Expect = 1.985e-84
Identity = 125/144 (86.81%), Postives = 135/144 (93.75%), Query Frame = 3

Query:  111 MDPYKFRPASSFNAPFFTTNSGAPVWNNNSSMTIGPRGPILLEDYHLVEKLANFDRERIPERVVHARGAGAKGFLEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFF 542
            MDPYK RP+S  N+ F+TTNSGAPVWNNNS++T+G RGPILLEDYHL+EKLA FDRERIPERVVHARGA AKGF EVTHD+S+LTCADFLRAPGVQTPVIVRFSTV+HERGSPETLRDPRGFAVKFYTREGNFDLVGNN PVFF
Sbjct:    1 MDPYKHRPSSGSNSTFWTTNSGAPVWNNNSALTVGERGPILLEDYHLIEKLAQFDRERIPERVVHARGASAKGFFEVTHDISHLTCADFLRAPGVQTPVIVRFSTVVHERGSPETLRDPRGFAVKFYTREGNFDLVGNNMPVFF 144

HSP 2 Score: 62.7734 bits (151), Expect = 1.985e-84
Identity = 25/32 (78.12%), Postives = 30/32 (93.75%), Query Frame = 1

Query:  532 PSFFVRDGMKFPDMVHALKPNPKSHIQENWRI 627
            P FF+RDGMKFPDMVHA KP+PK+++QENWRI
Sbjct:  141 PVFFIRDGMKFPDMVHAFKPSPKTNMQENWRI 172

HSP 3 Score: 24.2534 bits (51), Expect = 1.985e-84
Identity = 9/12 (75.00%), Postives = 9/12 (75.00%), Query Frame = 2

Query:  629 VDFFSHXPEXXH 664
            VDFFSH PE  H
Sbjct:  173 VDFFSHHPESLH 184

[Close]

BLAST of DR405027 vs. ExPASy Swiss-Prot
Match: CATA1_NICPL (Catalase isozyme 1 (Fragment) OS=Nicotiana plumbaginifolia GN=CAT1 PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 1.986e-84
Identity = 122/137 (89.05%), Postives = 133/137 (97.08%), Query Frame = 3

Query:  132 PASSFNAPFFTTNSGAPVWNNNSSMTIGPRGPILLEDYHLVEKLANFDRERIPERVVHARGAGAKGFLEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFF 542
            P+S+FN+PF TTNSGAPV+NNNSS+T+G RGP+LLEDYHLVEKLANFDRER+PERVVHARGA AKGF EVTHD+++LTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFF
Sbjct:    1 PSSAFNSPFCTTNSGAPVFNNNSSLTVGARGPVLLEDYHLVEKLANFDRERVPERVVHARGASAKGFFEVTHDITHLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFF 137

HSP 2 Score: 70.8626 bits (172), Expect = 1.986e-84
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = 1

Query:  532 PSFFVRDGMKFPDMVHALKPNPKSHIQENWRI 627
            P FF+RDGMKFPDMVHALKPNPKSHIQENWR+
Sbjct:  134 PVFFIRDGMKFPDMVHALKPNPKSHIQENWRV 165

HSP 3 Score: 23.0978 bits (48), Expect = 1.986e-84
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 2

Query:  629 VDFFSHXPEXXH 664
            +DFFSH PE  H
Sbjct:  166 LDFFSHVPESLH 177

[Close]

BLAST of DR405027 vs. ExPASy Swiss-Prot
Match: CATA1_HORVU (Catalase isozyme 1 OS=Hordeum vulgare GN=CAT1 PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 2.147e-83
Identity = 124/144 (86.11%), Postives = 133/144 (92.36%), Query Frame = 3

Query:  111 MDPYKFRPASSFNAPFFTTNSGAPVWNNNSSMTIGPRGPILLEDYHLVEKLANFDRERIPERVVHARGAGAKGFLEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFF 542
            MDPYK RP S  N+ ++TTNSGAPVWNNN+++T+G RGPILLEDYHL+EKLA FDRERIPERVVHARGA AKGF EVTHDVS LTCADFLRAPGVQTPVIVRFSTV+HERGSPETLRDPRGFAVKFYTREGNFDLVGNN PVFF
Sbjct:    1 MDPYKHRPTSGANSAYWTTNSGAPVWNNNNALTVGHRGPILLEDYHLIEKLAQFDRERIPERVVHARGASAKGFFEVTHDVSQLTCADFLRAPGVQTPVIVRFSTVVHERGSPETLRDPRGFAVKFYTREGNFDLVGNNMPVFF 144

HSP 2 Score: 62.3882 bits (150), Expect = 2.147e-83
Identity = 24/32 (75.00%), Postives = 30/32 (93.75%), Query Frame = 1

Query:  532 PSFFVRDGMKFPDMVHALKPNPKSHIQENWRI 627
            P FF+RDGMKFPDMVHA KP+PK+++QENWR+
Sbjct:  141 PVFFIRDGMKFPDMVHAFKPSPKTNMQENWRV 172

HSP 3 Score: 24.2534 bits (51), Expect = 2.147e-83
Identity = 9/12 (75.00%), Postives = 9/12 (75.00%), Query Frame = 2

Query:  629 VDFFSHXPEXXH 664
            VDFFSH PE  H
Sbjct:  173 VDFFSHHPESLH 184

The following BLAST results are available for this feature:

BLAST of DR405027 vs. ExPASy Swiss-Prot

BLAST of DR405027 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141


Match Name	E-value	Identity	Description
CATA2_SOLLC	5.436e-88	88.89	Catalase isozyme 2 OS=Solanum lycopersicum GN=CAT2...	[more]
CATA1_CUCPE	7.480e-88	92.36	Catalase isozyme 1 OS=Cucurbita pepo GN=CAT1 PE=2 ...	[more]
CATA_PEA	3.686e-87	90.28	Catalase OS=Pisum sativum PE=2 SV=1	[more]
CATA1_ARATH	4.516e-87	87.50	Catalase-1 OS=Arabidopsis thaliana GN=CAT1 PE=1 SV...	[more]
CATA_HELAN	1.392e-86	88.89	Catalase OS=Helianthus annuus PE=2 SV=1	[more]
CATA1_MAIZE	3.115e-85	87.50	Catalase isozyme 1 OS=Zea mays GN=CAT1 PE=2 SV=1	[more]
CATA2_ORYSJ	1.985e-84	86.81	Catalase isozyme B OS=Oryza sativa subsp. japonica...	[more]
CATA2_ORYSI	1.985e-84	86.81	Catalase isozyme B OS=Oryza sativa subsp. indica G...	[more]
CATA1_NICPL	1.986e-84	89.05	Catalase isozyme 1 (Fragment) OS=Nicotiana plumbag...	[more]
CATA1_HORVU	2.147e-83	86.11	Catalase isozyme 1 OS=Hordeum vulgare GN=CAT1 PE=2...	[more]

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Properties


Property Name	Value
Genbank description	CSAB-PNP1240C12 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240C12 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR405027 ID=DR405027; Name=DR405027; organism=Citrus sinensis; type=EST; length=666bp
GGGGGATCNNCGGCTTTTGGTTGCCACGCAATCCCCATCTGTCTACTCTC
TCTTTTTCTTTCTCGTAGTGTAGCTTCTCGTTCAATCTTTTTTTCTGCTT
CCCTCCCGCTATGGATCCATACAAGTTCCGCCCTGCCAGTTCTTTCAACG
CCCCCTTCTTTACCACCAATTCCGGCGCTCCGGTATGGAACAACAACTCA
TCAATGACGATTGGACCTAGAGGTCCAATCCTCCTTGAGGATTATCATCT
AGTGGAGAAACTTGCAAATTTTGATAGGGAGCGGATTCCAGAACGTGTTG
TCCATGCCAGGGGAGCCGGTGCTAAGGGTTTCCTTGAGGTCACCCATGAT
GTTTCTAACCTTACTTGTGCTGATTTCCTTCGAGCCCCAGGGGTTCAGAC
GCCTGTCATTGTCCGCTTCTCCACTGTTATCCATGAGCGTGGCAGCCCTG
AAACCCTGAGAGATCCTCGAGGATTTGCGGTCAAGTTTTACACCAGAGAG
GGTAATTTTGATCTTGTGGGAAACAATTTCCCCGTCTTTTTTTGTCCGTG
ATGGAATGAAATTCCCTGACATGGTCCATGCGCTTAAACCTAACCCAAAG
TCTCACATCCAAGAGAACTGGAGGATTTGTTGACTTCTTCTCCCATNNNC
CTGAAAGNNNGCACAT