DR405027

Overview
NameDR405027
Unique NameDR405027
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length666
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405027 vs. ExPASy Swiss-Prot
Match: CATA_IPOBA (Catalase OS=Ipomoea batatas PE=2 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 1.780e-68
Identity = 120/144 (83.33%), Postives = 132/144 (91.67%), Query Frame = 3
Query:  111 MDPYKFRPASSFNAPFFTTNSGAPVWNNNSSMTIGPRGPILLEDYHLVEKLANFDRERIPERVVHARGAGAKGFLEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFF 542
            MDP K+RP+SSFN PF TTNSGAPVWNN  ++T+G RGPILLEDYHLVEK+ NF RERIPERVVHARGA AKGF EVTHD+++LTCADFLRAPGVQTP+IVRFSTVIHERGSPET+RDPRGFAVK YTR GN+DLVGNNFPVFF
Sbjct:    1 MDPSKYRPSSSFNTPFCTTNSGAPVWNNTCALTVGSRGPILLEDYHLVEKIQNFTRERIPERVVHARGASAKGFFEVTHDITHLTCADFLRAPGVQTPLIVRFSTVIHERGSPETIRDPRGFAVKMYTRGGNWDLVGNNFPVFF 144          
BLAST of DR405027 vs. ExPASy Swiss-Prot
Match: CATA_LISIN (Catalase OS=Listeria innocua GN=kat PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 1.083e-49
Identity = 83/127 (65.35%), Postives = 96/127 (75.59%), Query Frame = 3
Query:  162 TTNSGAPVWNNNSSMTIGPRGPILLEDYHLVEKLANFDRERIPERVVHARGAGAKGFLEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFF 542
            TTN G PV +N +SMT G +GP LLEDY L+EKLA+FDRER+PERVVHARGAGA G       +   T A+FL+  G +T V  RFSTVIH + SPETLRDPRGF+VKFYT EGN+D VGNN PVFF
Sbjct:    8 TTNQGTPVGDNQNSMTAGLKGPTLLEDYVLIEKLAHFDRERVPERVVHARGAGAHGKFVTKKSMKKYTIANFLQEEGTETEVFARFSTVIHGQHSPETLRDPRGFSVKFYTEEGNYDFVGNNLPVFF 134          

HSP 2 Score: 46.595 bits (109), Expect = 1.083e-49
Identity = 17/31 (54.84%), Postives = 27/31 (87.10%), Query Frame = 1
Query:  532 PSFFVRDGMKFPDMVHALKPNPKSHIQENWR 624
            P FF+RD +KFPD++H+LKP+P+++IQ+  R
Sbjct:  131 PVFFIRDAIKFPDVIHSLKPDPRTNIQDGNR 161          
BLAST of DR405027 vs. ExPASy Swiss-Prot
Match: CATA_LISMO (Catalase OS=Listeria monocytogenes GN=kat PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 2.397e-49
Identity = 82/127 (64.57%), Postives = 95/127 (74.80%), Query Frame = 3
Query:  162 TTNSGAPVWNNNSSMTIGPRGPILLEDYHLVEKLANFDRERIPERVVHARGAGAKGFLEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFF 542
            TTN G PV +N +SMT G +GP L+EDY L+EKLA+FDRER+PERVVHARGAGA G       +   T A FL+  G +T V  RFSTVIH + SPETLRDPRGF+VKFYT EGN+D VGNN PVFF
Sbjct:    8 TTNQGVPVGDNQNSMTAGRKGPTLIEDYVLIEKLAHFDRERVPERVVHARGAGAHGKFVTKKSMKKYTMAKFLQEEGTETEVFARFSTVIHGQHSPETLRDPRGFSVKFYTEEGNYDFVGNNLPVFF 134          

HSP 2 Score: 46.595 bits (109), Expect = 2.397e-49
Identity = 17/31 (54.84%), Postives = 27/31 (87.10%), Query Frame = 1
Query:  532 PSFFVRDGMKFPDMVHALKPNPKSHIQENWR 624
            P FF+RD +KFPD++H+LKP+P+++IQ+  R
Sbjct:  131 PVFFIRDAIKFPDVIHSLKPDPRTNIQDGNR 161          
BLAST of DR405027 vs. ExPASy Swiss-Prot
Match: CATA_LISSE (Catalase OS=Listeria seeligeri GN=kat PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 3.125e-49
Identity = 82/127 (64.57%), Postives = 95/127 (74.80%), Query Frame = 3
Query:  162 TTNSGAPVWNNNSSMTIGPRGPILLEDYHLVEKLANFDRERIPERVVHARGAGAKGFLEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFF 542
            TTN G P+ +N +SMT G +GP LLEDY L+EKLA+FDRER+PERVVHARGAGA G       +   T A FL+  G +T V  RFSTVIH + SPETLRDPRGF+VKFYT EGN+D VGNN PVFF
Sbjct:    8 TTNQGVPIGDNQNSMTAGLKGPTLLEDYVLIEKLAHFDRERVPERVVHARGAGAHGKFVTKKSMKKYTKAQFLQEEGTETEVFARFSTVIHGQHSPETLRDPRGFSVKFYTEEGNYDFVGNNLPVFF 134          

HSP 2 Score: 46.595 bits (109), Expect = 3.125e-49
Identity = 17/31 (54.84%), Postives = 27/31 (87.10%), Query Frame = 1
Query:  532 PSFFVRDGMKFPDMVHALKPNPKSHIQENWR 624
            P FF+RD +KFPD++H+LKP+P+++IQ+  R
Sbjct:  131 PVFFIRDAIKFPDVIHSLKPDPRTNIQDGNR 161          
BLAST of DR405027 vs. ExPASy Swiss-Prot
Match: CATA_BACSU (Vegetative catalase OS=Bacillus subtilis GN=katA PE=1 SV=5)

HSP 1 Score: 174.481 bits (441), Expect = 9.019e-49
Identity = 83/127 (65.35%), Postives = 103/127 (81.10%), Query Frame = 3
Query:  162 TTNSGAPVWNNNSSMTIGPRGPILLEDYHLVEKLANFDRERIPERVVHARGAGAKGFLEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFF 542
            TT+ GAPV +N +SMT G RGP L++D HL+EKLA+F+RER+PERVVHA+GAGA G+ EVT+DV+  T A FL   G +TP+ +RFSTV  E GS +T+RDPRGFAVKFYT EGN+D+VGNN PVFF
Sbjct:    7 TTSWGAPVGDNQNSMTAGSRGPTLIQDVHLLEKLAHFNRERVPERVVHAKGAGAHGYFEVTNDVTKYTKAAFLSEVGKRTPLFIRFSTVAGELGSADTVRDPRGFAVKFYTEEGNYDIVGNNTPVFF 133          

HSP 2 Score: 40.817 bits (94), Expect = 9.019e-49
Identity = 14/28 (50.00%), Postives = 22/28 (78.57%), Query Frame = 1
Query:  529 SPSFFVRDGMKFPDMVHALKPNPKSHIQ 612
            +P FF+RD +KFPD +H  K +PK+H++
Sbjct:  129 TPVFFIRDAIKFPDFIHTQKRDPKTHLK 156          
BLAST of DR405027 vs. ExPASy Swiss-Prot
Match: CATA_DICDI (Catalase-A OS=Dictyostelium discoideum GN=catA PE=2 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 1.956e-45
Identity = 83/133 (62.41%), Postives = 103/133 (77.44%), Query Frame = 3
Query:  147 NAPFFTTNSGAPVWNNNSSMTIGPRGPILLEDYHLVEKLANFDRERIPERVVHARGAGAKGFLEV-THDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFF 542
            +AP  TT+SG+P+ NN +SMT G  GPIL++D+ L++KLA+FDRERIPERVVHA+GAGA G+ EV + DV     A FL   G +TP+  RFSTV  E+GS ++ RDPRGFAVKFYT EGNFD+VGNN PVFF
Sbjct:    2 SAPVLTTSSGSPIDNNLNSMTAGVNGPILIQDFTLIDKLAHFDRERIPERVVHAKGAGAHGYFEVPSSDVPKWCKAKFLNKVGKRTPIFTRFSTVGGEKGSSDSERDPRGFAVKFYTEEGNFDMVGNNTPVFF 134          

HSP 2 Score: 36.5798 bits (83), Expect = 1.956e-45
Identity = 13/29 (44.83%), Postives = 21/29 (72.41%), Query Frame = 1
Query:  529 SPSFFVRDGMKFPDMVHALKPNPKSHIQE 615
            +P FF+RD  KFPD +H  K NP+++ ++
Sbjct:  130 TPVFFIRDPSKFPDFIHTQKRNPQTNCKD 158          
BLAST of DR405027 vs. ExPASy Swiss-Prot
Match: CATE_MYCAV (Catalase HPII OS=Mycobacterium avium GN=katE PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.244e-44
Identity = 78/130 (60.00%), Postives = 96/130 (73.85%), Query Frame = 3
Query:  156 FFTTNSGAPVWNNNSSMTIGPRGPILLEDYHLVEKLANFDRERIPERVVHARGAGAKGFLEVTHD-VSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFF 542
            + TT  G  V + + ++T+G RGP LLED+H  EK+ +FD ERIPERVVHARGAGA G+ E   D ++  T A FL +PG +TPV VRFSTV   RGS +T+RD RGFA KFYT +GN+DLVGNNFPVFF
Sbjct:   28 YLTTQQGVRVDHTDDALTVGERGPTLLEDFHAREKITHFDHERIPERVVHARGAGAYGYFEPYDDRLAQYTAAKFLTSPGTRTPVFVRFSTVAGSRGSADTVRDVRGFATKFYTEQGNYDLVGNNFPVFF 157          

HSP 2 Score: 40.0466 bits (92), Expect = 1.244e-44
Identity = 15/28 (53.57%), Postives = 22/28 (78.57%), Query Frame = 1
Query:  532 PSFFVRDGMKFPDMVHALKPNPKSHIQE 615
            P FF++DG+KFP +VHA+KP P + I +
Sbjct:  154 PVFFIQDGIKFPVLVHAVKPEPHNEIPQ 181          
BLAST of DR405027 vs. ExPASy Swiss-Prot
Match: CATA_DEIRA (Catalase OS=Deinococcus radiodurans GN=katA PE=1 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 2.761e-44
Identity = 82/147 (55.78%), Postives = 95/147 (64.63%), Query Frame = 3
Query:  117 PYKFRPASSFNAPFFTTNSGAPVWNNNSSMTIGPRGPILLEDYHLVEKLANFDRERIPERVVHARGAGAKGFLEVT-----HDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFF 542
            P   R A        TT  G PV +N +S T+G RGP+ LE+Y  +EKL++FDRERIPERVVHARG GA G    T       VS  T A   +  G +TPV VRFSTV H   SPETLRDPRGFAVKFYT +GN+DLVGNN  +FF
Sbjct:   19 PRDGRTAPGEQGTTLTTRQGHPVHDNQNSRTVGSRGPMTLENYQFIEKLSHFDRERIPERVVHARGVGAHGVFRATGKVGDEPVSKYTRAKLFQEDGKETPVFVRFSTVGHGTHSPETLRDPRGFAVKFYTEDGNWDLVGNNLKIFF 165          

HSP 2 Score: 43.1282 bits (100), Expect = 2.761e-44
Identity = 16/30 (53.33%), Postives = 24/30 (80.00%), Query Frame = 1
Query:  538 FFVRDGMKFPDMVHALKPNPKSHIQENWRI 627
            FF+RD +KFPD++H+ KP+P ++IQ   RI
Sbjct:  164 FFIRDALKFPDLIHSQKPSPTTNIQSQERI 193          
BLAST of DR405027 vs. ExPASy Swiss-Prot
Match: CATA_METBF (Catalase OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=kat PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 2.763e-44
Identity = 79/127 (62.20%), Postives = 99/127 (77.95%), Query Frame = 3
Query:  162 TTNSGAPVWNNNSSMTIGPRGPILLEDYHLVEKLANFDRERIPERVVHARGAGAKGFLEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFF 542
            TT  G PV ++ +S+T G RGP+L++D HL++KL++FD ERIPERVVHA+GAGA G+ EVT DV+  T A FL   G +T V VRFSTV  E+GS ++ RDPRGFAVKFYT +GN+DLVGNN PVFF
Sbjct:   11 TTGFGIPVGDDQNSLTAGNRGPVLMQDVHLLDKLSHFDHERIPERVVHAKGAGAGGYFEVTADVTKYTKAKFLSEIGKRTEVFVRFSTVGGEKGSADSARDPRGFAVKFYTEDGNYDLVGNNTPVFF 137          

HSP 2 Score: 36.965 bits (84), Expect = 2.763e-44
Identity = 13/29 (44.83%), Postives = 21/29 (72.41%), Query Frame = 1
Query:  529 SPSFFVRDGMKFPDMVHALKPNPKSHIQE 615
            +P FF+RD +KFPD +H  K NP ++ ++
Sbjct:  133 TPVFFIRDPLKFPDFIHTQKRNPATNCKD 161          
BLAST of DR405027 vs. ExPASy Swiss-Prot
Match: CATA_STRCO (Catalase OS=Streptomyces coelicolor GN=katA PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 4.693e-44
Identity = 81/127 (63.78%), Postives = 96/127 (75.59%), Query Frame = 3
Query:  162 TTNSGAPVWNNNSSMTIGPRGPILLEDYHLVEKLANFDRERIPERVVHARGAGAKGFLEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFF 542
            TT SGAPV +N +S + G  GP+L++D HL+EKLA F+RERIPERVVHARG+GA G  EVT DVS  T ADFL   G +T V +RFSTV    G  + +RDPRGFA+KFYT EGN+DLVGNN PVFF
Sbjct:    7 TTESGAPVADNQNSASAGIGGPLLIQDQHLIEKLARFNRERIPERVVHARGSGAYGHFEVTDDVSGFTHADFLNTVGKRTEVFLRFSTVADSLGGADAVRDPRGFALKFYTEEGNYDLVGNNTPVFF 133          

HSP 2 Score: 33.8834 bits (76), Expect = 4.693e-44
Identity = 13/29 (44.83%), Postives = 21/29 (72.41%), Query Frame = 1
Query:  529 SPSFFVRDGMKFPDMVHALKPNPKSHIQE 615
            +P FF++D +KFPD +H+ K +P +  QE
Sbjct:  129 TPVFFIKDPIKFPDFIHSQKRDPFTGRQE 157          
The following BLAST results are available for this feature:
BLAST of DR405027 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
CATA_IPOBA1.780e-6883.33Catalase OS=Ipomoea batatas PE=2 SV=1[more]
CATA_LISIN1.083e-4965.35Catalase OS=Listeria innocua GN=kat PE=3 SV=1[more]
CATA_LISMO2.397e-4964.57Catalase OS=Listeria monocytogenes GN=kat PE=3 SV=... [more]
CATA_LISSE3.125e-4964.57Catalase OS=Listeria seeligeri GN=kat PE=3 SV=1[more]
CATA_BACSU9.019e-4965.35Vegetative catalase OS=Bacillus subtilis GN=katA P... [more]
CATA_DICDI1.956e-4562.41Catalase-A OS=Dictyostelium discoideum GN=catA PE=... [more]
CATE_MYCAV1.244e-4460.00Catalase HPII OS=Mycobacterium avium GN=katE PE=3 ... [more]
CATA_DEIRA2.761e-4455.78Catalase OS=Deinococcus radiodurans GN=katA PE=1 S... [more]
CATA_METBF2.763e-4462.20Catalase OS=Methanosarcina barkeri (strain Fusaro ... [more]
CATA_STRCO4.693e-4463.78Catalase OS=Streptomyces coelicolor GN=katA PE=3 S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAB-PNP1240C12 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405027 ID=DR405027; Name=DR405027; organism=Citrus sinensis; type=EST; length=666bp
GGGGGATCNNCGGCTTTTGGTTGCCACGCAATCCCCATCTGTCTACTCTC
TCTTTTTCTTTCTCGTAGTGTAGCTTCTCGTTCAATCTTTTTTTCTGCTT
CCCTCCCGCTATGGATCCATACAAGTTCCGCCCTGCCAGTTCTTTCAACG
CCCCCTTCTTTACCACCAATTCCGGCGCTCCGGTATGGAACAACAACTCA
TCAATGACGATTGGACCTAGAGGTCCAATCCTCCTTGAGGATTATCATCT
AGTGGAGAAACTTGCAAATTTTGATAGGGAGCGGATTCCAGAACGTGTTG
TCCATGCCAGGGGAGCCGGTGCTAAGGGTTTCCTTGAGGTCACCCATGAT
GTTTCTAACCTTACTTGTGCTGATTTCCTTCGAGCCCCAGGGGTTCAGAC
GCCTGTCATTGTCCGCTTCTCCACTGTTATCCATGAGCGTGGCAGCCCTG
AAACCCTGAGAGATCCTCGAGGATTTGCGGTCAAGTTTTACACCAGAGAG
GGTAATTTTGATCTTGTGGGAAACAATTTCCCCGTCTTTTTTTGTCCGTG
ATGGAATGAAATTCCCTGACATGGTCCATGCGCTTAAACCTAACCCAAAG
TCTCACATCCAAGAGAACTGGAGGATTTGTTGACTTCTTCTCCCATNNNC
CTGAAAGNNNGCACAT
back to top