DR404568

Overview
NameDR404568
Unique NameDR404568
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length296
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404568 vs. ExPASy Swiss-Prot
Match: RL3_MACFA (60S ribosomal protein L3 OS=Macaca fascicularis GN=RPL3 PE=2 SV=3)

HSP 1 Score: 125.561 bits (314), Expect = 8.051e-29
Identity = 59/86 (68.60%), Postives = 72/86 (83.72%), Query Frame = 2
Query:   38 MEIQVXXGTIAXKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTV 295
            MEIQV  GT+A K+D+A    E+Q+PV+ VF +DEMID+IGVTKGKGY+GV +RW   +LPRKTHRGLRKVACIGA HPARV+F+V
Sbjct:  181 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGARHPARVAFSV 266          
BLAST of DR404568 vs. ExPASy Swiss-Prot
Match: RL3_CAEBR (60S ribosomal protein L3 OS=Caenorhabditis briggsae GN=rpl-3 PE=3 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 1.052e-28
Identity = 58/86 (67.44%), Postives = 69/86 (80.23%), Query Frame = 2
Query:   38 MEIQVXXGTIAXKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTV 295
            +EIQ+  GTI  KVD+A    EKQI VD VF +DEMID IGVTKG G++GV +RW   +LPRKTH+GLRKVACIGAWHP+RV+FTV
Sbjct:  181 VEIQINGGTIEQKVDWAREHLEKQIQVDTVFSQDEMIDTIGVTKGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTV 266          
BLAST of DR404568 vs. ExPASy Swiss-Prot
Match: RL3_DEBHA (60S ribosomal protein L3 OS=Debaryomyces hansenii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.373e-28
Identity = 56/85 (65.88%), Postives = 68/85 (80.00%), Query Frame = 2
Query:   41 EIQVXXGTIAXKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTV 295
            EIQV  G+++ KVD+A   FEK + VD+VF+KDEM+D+  VTKG G+EGV  RWG  +LPRKTHRGLRKVACIGAWHPA V +TV
Sbjct:  180 EIQVNGGSVSDKVDWAKEHFEKTVSVDSVFEKDEMVDVAAVTKGHGFEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPANVQWTV 264          
BLAST of DR404568 vs. ExPASy Swiss-Prot
Match: RL3_CAEEL (60S ribosomal protein L3 OS=Caenorhabditis elegans GN=rpl-3 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.060e-28
Identity = 57/86 (66.28%), Postives = 69/86 (80.23%), Query Frame = 2
Query:   38 MEIQVXXGTIAXKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTV 295
            +EIQV  GTI  KVD+A    EKQ+ VD VF +DEMID IGVT+G G++GV +RW   +LPRKTH+GLRKVACIGAWHP+RV+FTV
Sbjct:  181 VEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTV 266          
BLAST of DR404568 vs. ExPASy Swiss-Prot
Match: RL3_DICDI (60S ribosomal protein L3 OS=Dictyostelium discoideum GN=rpl3 PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 3.996e-28
Identity = 56/86 (65.12%), Postives = 70/86 (81.40%), Query Frame = 2
Query:   38 MEIQVXXGTIAXKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTV 295
            +EIQV  G+I  KV++A   FEK + V  VF ++E+ID+IGVTKGKG+ GV+ RWGV +LPRKTH+GLRKVACIGAWHP+RVS TV
Sbjct:  182 LEIQVNGGSIVEKVNFAVANFEKTVNVTGVFAENELIDVIGVTKGKGFNGVIKRWGVRKLPRKTHKGLRKVACIGAWHPSRVSTTV 267          
BLAST of DR404568 vs. ExPASy Swiss-Prot
Match: RL3B_SCHPO (60S ribosomal protein L3-B OS=Schizosaccharomyces pombe GN=rpl3b PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 6.816e-28
Identity = 55/86 (63.95%), Postives = 68/86 (79.07%), Query Frame = 2
Query:   38 MEIQVXXGTIAXKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTV 295
            MEIQV  G++A KV++A   FEK + + + F+++EMID+IGVT+GKG EG   RWG  RLPRKTHRGLRKVACIGAWHPA V +TV
Sbjct:  179 MEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTV 264          
BLAST of DR404568 vs. ExPASy Swiss-Prot
Match: RL3A_SCHPO (60S ribosomal protein L3-A OS=Schizosaccharomyces pombe GN=rpl3a PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 6.816e-28
Identity = 55/86 (63.95%), Postives = 68/86 (79.07%), Query Frame = 2
Query:   38 MEIQVXXGTIAXKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTV 295
            MEIQV  G++A KV++A   FEK + + + F+++EMID+IGVT+GKG EG   RWG  RLPRKTHRGLRKVACIGAWHPA V +TV
Sbjct:  179 MEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTV 264          
BLAST of DR404568 vs. ExPASy Swiss-Prot
Match: RL3_ASHGO (60S ribosomal protein L3 OS=Ashbya gossypii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.902e-28
Identity = 55/85 (64.71%), Postives = 69/85 (81.18%), Query Frame = 2
Query:   41 EIQVXXGTIAXKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTV 295
            EIQ+  G+++ KVD+A   FEK + VD+VF+++EMID+I VTKG G+EGV  RWG  +LPRKTHRGLRKVACIGAWHPA V +TV
Sbjct:  181 EIQLNGGSVSEKVDWAREHFEKTVSVDSVFEQNEMIDVIAVTKGHGFEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWTV 265          
BLAST of DR404568 vs. ExPASy Swiss-Prot
Match: RL3_KLULA (60S ribosomal protein L3 OS=Kluyveromyces lactis GN=RPL3 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.383e-27
Identity = 53/85 (62.35%), Postives = 69/85 (81.18%), Query Frame = 2
Query:   41 EIQVXXGTIAXKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTV 295
            EIQ+  G+++ KVD+A   FEK + VD+VF+++EMID++ VTKG G+EGV  RWG  +LPRKTHRGLRKVACIGAWHPA V ++V
Sbjct:  180 EIQLNGGSVSDKVDWAKEHFEKTVAVDSVFEQNEMIDVVAVTKGHGFEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSV 264          
BLAST of DR404568 vs. ExPASy Swiss-Prot
Match: RL3_YEAST (60S ribosomal protein L3 OS=Saccharomyces cerevisiae GN=RPL3 PE=1 SV=4)

HSP 1 Score: 119.398 bits (298), Expect = 5.770e-27
Identity = 55/85 (64.71%), Postives = 68/85 (80.00%), Query Frame = 2
Query:   41 EIQVXXGTIAXKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTV 295
            EIQ+  G+I+ KVD+A   FEK + VD+VF+++EMID I VTKG G+EGV  RWG  +LPRKTHRGLRKVACIGAWHPA V ++V
Sbjct:  180 EIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSV 264          
The following BLAST results are available for this feature:
BLAST of DR404568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
RL3_MACFA8.051e-2968.6060S ribosomal protein L3 OS=Macaca fascicularis GN... [more]
RL3_CAEBR1.052e-2867.4460S ribosomal protein L3 OS=Caenorhabditis briggsa... [more]
RL3_DEBHA1.373e-2865.8860S ribosomal protein L3 OS=Debaryomyces hansenii ... [more]
RL3_CAEEL3.060e-2866.2860S ribosomal protein L3 OS=Caenorhabditis elegans... [more]
RL3_DICDI3.996e-2865.1260S ribosomal protein L3 OS=Dictyostelium discoide... [more]
RL3B_SCHPO6.816e-2863.9560S ribosomal protein L3-B OS=Schizosaccharomyces ... [more]
RL3A_SCHPO6.816e-2863.9560S ribosomal protein L3-A OS=Schizosaccharomyces ... [more]
RL3_ASHGO8.902e-2864.7160S ribosomal protein L3 OS=Ashbya gossypii GN=RPL... [more]
RL3_KLULA3.383e-2762.3560S ribosomal protein L3 OS=Kluyveromyces lactis G... [more]
RL3_YEAST5.770e-2764.7160S ribosomal protein L3 OS=Saccharomyces cerevisi... [more]

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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243M01 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243M01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404568 ID=DR404568; Name=DR404568; organism=Citrus sinensis; type=EST; length=296bp
GGGATGAAGGGTTTGAAGCATAAGAAGGCACACCTCGATGGAAATCCAGG
TCAANNNNGGCACCATTGCTNNAAAAGTTGACTATGCATATGGCTTCTTT
GAAAAGCAAATTCCTGTTGATGCTGTTTTCCAGAAGGATGAGATGATTGA
CATCATCGGTGTCACGAAAGGTAAAGGTTATGAAGGTGTTGTCACCCGTT
GGGGTGTTACCCGCCTTCCTCGCAAGACTCACAGAGGTCTGCGTAAGGTG
GCTTGTATTGGTGCCTGGCACCCTGCTAGGGTTTCCTTCACAGTTG
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