DR404408

Overview
NameDR404408
Unique NameDR404408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404408 vs. ExPASy Swiss-Prot
Match: RAC3_ARATH (Rac-like GTP-binding protein ARAC3 OS=Arabidopsis thaliana GN=ARAC3 PE=1 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 6.655e-84
Identity = 145/158 (91.77%), Postives = 157/158 (99.37%), Query Frame = 3
Query:  291 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC 764
            MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANV+VDG+T+NLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSL+SKASYENV+KKW+PELRHYAPGVPIILVGTKLDLRDDKQFF +HPGAVPI+TAQGEEL+KLIG+PAYIEC
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVIVDGNTINLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLVSKASYENVSKKWVPELRHYAPGVPIILVGTKLDLRDDKQFFAEHPGAVPISTAQGEELKKLIGAPAYIEC 158          
BLAST of DR404408 vs. ExPASy Swiss-Prot
Match: RAC7_ORYSJ (Rac-like GTP-binding protein 7 OS=Oryza sativa subsp. japonica GN=RAC7 PE=2 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 2.004e-80
Identity = 140/158 (88.61%), Postives = 152/158 (96.20%), Query Frame = 3
Query:  291 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC 764
            MS +RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+ KKWIPELRHYAP VPI+LVGTKLDLR+DKQFF+DHPG  PI+TAQGEEL+++IG+ AYIEC
Sbjct:    1 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWIPELRHYAPNVPIVLVGTKLDLREDKQFFLDHPGLAPISTAQGEELKRMIGAAAYIEC 158          
BLAST of DR404408 vs. ExPASy Swiss-Prot
Match: RAC2_ARATH (Rac-like GTP-binding protein ARAC2 OS=Arabidopsis thaliana GN=ARAC2 PE=1 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 7.615e-80
Identity = 140/158 (88.61%), Postives = 150/158 (94.94%), Query Frame = 3
Query:  291 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC 764
            MS +RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+ KKW+PEL+HYAPG+PI+LVGTKLDLRDDKQF  DHPGA  ITTAQGEELRK+IG+  Y+EC
Sbjct:    1 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKLDLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLEC 158          
BLAST of DR404408 vs. ExPASy Swiss-Prot
Match: RAC13_GOSHI (Rac-like GTP-binding protein RAC13 OS=Gossypium hirsutum GN=RAC13 PE=2 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.299e-79
Identity = 140/158 (88.61%), Postives = 150/158 (94.94%), Query Frame = 3
Query:  291 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC 764
            MS +RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+ KKWIPELRHYA  VP++LVGTKLDLRDDKQF IDHPGA PI+T+QGEEL+K+IG+  YIEC
Sbjct:    1 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIYKKWIPELRHYAHNVPVVLVGTKLDLRDDKQFLIDHPGATPISTSQGEELKKMIGAVTYIEC 158          
BLAST of DR404408 vs. ExPASy Swiss-Prot
Match: RAC2_LOTJA (Rac-like GTP-binding protein RAC2 OS=Lotus japonicus GN=RAC2 PE=2 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.696e-79
Identity = 138/158 (87.34%), Postives = 151/158 (95.57%), Query Frame = 3
Query:  291 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC 764
            MS +RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSL+S+ASYEN++KKWIPELRHYAP VPI+LVGTKLDLR+D+Q+ IDHPGA PITTAQGEEL+K IG+  Y+EC
Sbjct:    1 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLLSRASYENISKKWIPELRHYAPTVPIVLVGTKLDLREDRQYLIDHPGATPITTAQGEELKKAIGAAVYLEC 158          
BLAST of DR404408 vs. ExPASy Swiss-Prot
Match: RAC9_GOSHI (Rac-like GTP-binding protein RAC9 OS=Gossypium hirsutum GN=RAC9 PE=2 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 6.446e-79
Identity = 140/158 (88.61%), Postives = 150/158 (94.94%), Query Frame = 3
Query:  291 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC 764
            M+ SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLIS+ASYENV KKWIPELRHYAP VPI+LVGTKLDLRDDKQF  D+PGA+ ITT+QGEEL+K+IG+  YIEC
Sbjct:    1 MNTSRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISRASYENVHKKWIPELRHYAPNVPIVLVGTKLDLRDDKQFLSDNPGAISITTSQGEELKKMIGAVTYIEC 158          
BLAST of DR404408 vs. ExPASy Swiss-Prot
Match: RAC4_ORYSJ (Rac-like GTP-binding protein 4 OS=Oryza sativa subsp. japonica GN=RAC4 PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 2.074e-77
Identity = 135/157 (85.99%), Postives = 147/157 (93.63%), Query Frame = 3
Query:  294 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC 764
            SASRFIKCVTVGDGAVGKTCMLI YTSN FPTDYVPTVFDNFSANVVVDG+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSL+S+ASYENV KKW+PEL+HYAPGVPI+LVGTKLDLR+DK + +DHP  VP+TTAQGEELRK IG+  YIEC
Sbjct:    4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYVPTVFDNFSANVVVDGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVMKKWLPELQHYAPGVPIVLVGTKLDLREDKHYLLDHPSLVPVTTAQGEELRKHIGATCYIEC 160          
BLAST of DR404408 vs. ExPASy Swiss-Prot
Match: RAC3_ORYSJ (Rac-like GTP-binding protein 3 OS=Oryza sativa subsp. japonica GN=RAC3 PE=2 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 3.537e-77
Identity = 133/157 (84.71%), Postives = 147/157 (93.63%), Query Frame = 3
Query:  294 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC 764
            SASRFIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANVVVD +TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSL+S+ASYEN+ KKWIPEL+HYAPGVPI+LVGTKLDLR+DK + +DHPG +P+TTAQGEELRK IG+  YIEC
Sbjct:    4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVDSTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENIMKKWIPELQHYAPGVPIVLVGTKLDLREDKHYLLDHPGMIPVTTAQGEELRKQIGAAYYIEC 160          
BLAST of DR404408 vs. ExPASy Swiss-Prot
Match: RAC10_ARATH (Rac-like GTP-binding protein ARAC10 OS=Arabidopsis thaliana GN=ARAC10 PE=1 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 8.712e-76
Identity = 131/157 (83.44%), Postives = 147/157 (93.63%), Query Frame = 3
Query:  294 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC 764
            SAS+FIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANVVV+G+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+L+FSL+S+ASYENV KKWIPEL+H+APGVP++LVGTKLDLR+DK +  DHPG  P+TTAQGEELRKLIG+  YIEC
Sbjct:    4 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLSFSLVSRASYENVFKKWIPELQHFAPGVPLVLVGTKLDLREDKHYLADHPGLSPVTTAQGEELRKLIGATYYIEC 160          
BLAST of DR404408 vs. ExPASy Swiss-Prot
Match: RAC8_ARATH (Rac-like GTP-binding protein ARAC8 OS=Arabidopsis thaliana GN=ARAC8 PE=1 SV=2)

HSP 1 Score: 276.944 bits (707), Expect = 8.154e-74
Identity = 129/157 (82.17%), Postives = 144/157 (91.72%), Query Frame = 3
Query:  294 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC 764
            SAS+FIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFS NVVV+G TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLIS+ASYENV KKWIPEL+H+APGVPI+LVGTK+DLR+D+ +  DHPG  P+TT+QGEELRK IG+  YIEC
Sbjct:    4 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSVNVVVEGITVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVFKKWIPELQHFAPGVPIVLVGTKMDLREDRHYLSDHPGLSPVTTSQGEELRKHIGATYYIEC 160          
The following BLAST results are available for this feature:
BLAST of DR404408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAC3_ARATH6.655e-8491.77Rac-like GTP-binding protein ARAC3 OS=Arabidopsis ... [more]
RAC7_ORYSJ2.004e-8088.61Rac-like GTP-binding protein 7 OS=Oryza sativa sub... [more]
RAC2_ARATH7.615e-8088.61Rac-like GTP-binding protein ARAC2 OS=Arabidopsis ... [more]
RAC13_GOSHI1.299e-7988.61Rac-like GTP-binding protein RAC13 OS=Gossypium hi... [more]
RAC2_LOTJA1.696e-7987.34Rac-like GTP-binding protein RAC2 OS=Lotus japonic... [more]
RAC9_GOSHI6.446e-7988.61Rac-like GTP-binding protein RAC9 OS=Gossypium hir... [more]
RAC4_ORYSJ2.074e-7785.99Rac-like GTP-binding protein 4 OS=Oryza sativa sub... [more]
RAC3_ORYSJ3.537e-7784.71Rac-like GTP-binding protein 3 OS=Oryza sativa sub... [more]
RAC10_ARATH8.712e-7683.44Rac-like GTP-binding protein ARAC10 OS=Arabidopsis... [more]
RAC8_ARATH8.154e-7482.17Rac-like GTP-binding protein ARAC8 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243D20 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243D20 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404408 ID=DR404408; Name=DR404408; organism=Citrus sinensis; type=EST; length=765bp
GGGGGCCATCCCTCGCTTTCTTTTTTTGGTTGGCATTGTTGCTTTCGCCG
CTGCTCTCTCTCTCTCTCTCTCTGTCTCTCTGCAGATTAGGGTTTAATTA
CCTTCGCTACCTTAATTCAAGACTTCTTTTCACTCAATTCCTGAGCTCCC
GTTGACGAACTGAGTTGTTCTCTTTTAGTCTTCGAAATGAGTGAAGTCTG
TGGCAAGAAGTGCACGTAAAGAACCTGAGCAGTCTTCCAAGGGCATTGTC
GGAATAAACTAAAAAAGAGAATAGAGATCTGGTGGCGCAAATGAGCGCGT
CGAGGTTCATAAAGTGCGTCACTGTCGGTGACGGCGCCGTCGGAAAAACT
TGCATGCTTATTTCTTACACCAGCAACACTTTCCCAACGGACTATGTGCC
AACTGTCTTTGACAATTTCAGTGCGAATGTGGTTGTTGATGGGAGTACGG
TCAACTTAGGGTTATGGGACACTGCTGGTCAGGAGGATTACAATAGATTG
AGACCGTTAAGTTATAGAGGAGCTGATGTGTTTATTCTTGCATTCTCACT
GATTAGCAAGGCCAGCTATGAAAATGTCGCCAAGAAGTGGATTCCAGAAC
TGAGGCACTATGCGCCTGGTGTTCCAATAATTCTTGTTGGGACTAAGCTA
GATCTTCGGGATGATAAGCAGTTCTTTATTGATCATCCAGGTGCAGTACC
AATTACTACAGCTCAGGGAGAGGAACTGAGGAAGCTGATTGGATCTCCTG
CATACATCGAATGTA
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