DR404408

Overview
NameDR404408
Unique NameDR404408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404408 vs. ExPASy Swiss-Prot
Match: RAP1B_CYPCA (Ras-related protein Rap-1b OS=Cyprinus carpio GN=rap1b PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.706e-13
Identity = 47/154 (30.52%), Postives = 75/154 (48.70%), Query Frame = 3
Query:  303 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIE 761
            R  K V +G G VGK+ + + +    F   Y PT+ D++   V VDG    L + DTAG E +  +R L  +    F L +S+ +++++ ++       LR      VPIILVG K DL D++           +   QG+ L +   S A++E
Sbjct:    2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPIILVGNKCDLEDER----------VVGKEQGQNLARQWNSCAFLE 145          
BLAST of DR404408 vs. ExPASy Swiss-Prot
Match: RABQ_DICDI (Ras-related protein RabQ OS=Dictyostelium discoideum GN=rabQ PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.706e-13
Identity = 36/122 (29.51%), Postives = 68/122 (55.74%), Query Frame = 3
Query:  309 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLDLRDDK 668
            +KC+  G   VGK+ +L+ +    F  +   T+   F   ++++D S + L +WDTAGQE +  +    YRGA + +L + +  + S++ ++  W+ E+R   +P + I L+G K D +D +
Sbjct:    6 LKCIVTGPPFVGKSSLLLQFCEKEFSFEMDTTIGVEFQTRSILIDSSKIKLEIWDTAGQESFRSITTNYYRGAHIALLCYDITKRQSFQYLS-GWMDEVRQMSSPNIVIALIGNKCDCKDKR 126          
BLAST of DR404408 vs. ExPASy Swiss-Prot
Match: RAB5C_CHICK (Ras-related protein Rab-5C OS=Gallus gallus GN=RAB5C PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.706e-13
Identity = 42/117 (35.90%), Postives = 65/117 (55.56%), Query Frame = 3
Query:  312 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDL 656
            K V +G+ AVGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE Y+ L P+ YRGA   I+ + + +  ++   AK W+ EL R  +P + I L G K DL
Sbjct:   23 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFVR-AKNWVKELQRQASPNIVIALAGNKADL 138          
BLAST of DR404408 vs. ExPASy Swiss-Prot
Match: RAB3D_RAT (GTP-binding protein Rab-3D OS=Rattus norvegicus GN=Rab3d PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.706e-13
Identity = 42/130 (32.31%), Postives = 68/130 (52.31%), Query Frame = 3
Query:  285 AQMSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDK 668
            A  +     K + +G+ +VGKT  L  Y  ++F   +V TV  +F    V      + L +WDTAGQE Y  +    YRGA  F+L + + ++ S+  V + W  +++ Y+     +ILVG K DL D++
Sbjct:   15 ADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAV-QDWATQIKTYSWDNAQVILVGNKCDLEDER 143          
BLAST of DR404408 vs. ExPASy Swiss-Prot
Match: RAB3D_MOUSE (Ras-related protein Rab-3D OS=Mus musculus GN=Rab3d PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.706e-13
Identity = 42/130 (32.31%), Postives = 68/130 (52.31%), Query Frame = 3
Query:  285 AQMSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDK 668
            A  +     K + +G+ +VGKT  L  Y  ++F   +V TV  +F    V      + L +WDTAGQE Y  +    YRGA  F+L + + ++ S+  V + W  +++ Y+     +ILVG K DL D++
Sbjct:   15 ADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAV-QDWATQIKTYSWDNAQVILVGNKCDLEDER 143          
BLAST of DR404408 vs. ExPASy Swiss-Prot
Match: RAB3D_HUMAN (Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3D PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.706e-13
Identity = 42/130 (32.31%), Postives = 68/130 (52.31%), Query Frame = 3
Query:  285 AQMSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDK 668
            A  +     K + +G+ +VGKT  L  Y  ++F   +V TV  +F    V      + L +WDTAGQE Y  +    YRGA  F+L + + ++ S+  V + W  +++ Y+     +ILVG K DL D++
Sbjct:   15 ADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLEDER 143          
BLAST of DR404408 vs. ExPASy Swiss-Prot
Match: RAB34_RAT (Ras-related protein Rab-34 OS=Rattus norvegicus GN=Rab34 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.706e-13
Identity = 48/134 (35.82%), Postives = 74/134 (55.22%), Query Frame = 3
Query:  312 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE-LRHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPI 704
            K + VGD +VGKTC++  +  +TF  +Y  T+  +F      V G   +L LWDTAGQE +  +    YRGA   I+ F+L   AS E+ +K+W+ + L+   P  V + LVG+K DL    Q+ +    A+ +
Sbjct:   54 KVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEH-SKQWLADALKENDPSNVLLFLVGSKKDLSTPAQYSLMEKDALKV 186          
BLAST of DR404408 vs. ExPASy Swiss-Prot
Match: RAB34_PIG (Ras-related protein Rab-34 OS=Sus scrofa GN=RAB34 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.706e-13
Identity = 48/134 (35.82%), Postives = 73/134 (54.48%), Query Frame = 3
Query:  312 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE-LRHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPI 704
            K + VGD +VGKTC++  +  +TF  +Y  T+  +F      V G   +L LWDTAGQE +  +    YRGA   I+ F+L   AS E+  K+W+ + L+   P  V + LVG+K DL    Q+ +    A+ +
Sbjct:   54 KVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEH-TKQWLADALKENDPSSVLLFLVGSKKDLSTPAQYVLMEKDALKV 186          
BLAST of DR404408 vs. ExPASy Swiss-Prot
Match: RAB33_CIOIN (Putative Ras-related protein Rab-33 OS=Ciona intestinalis GN=COS41.2 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.706e-13
Identity = 42/128 (32.81%), Postives = 64/128 (50.00%), Query Frame = 3
Query:  303 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNR-LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY---APGVPIILVGTKLDLRDDKQ 671
            R  K + +GD  VGKTC+   + +  FP     T+  +F    + +DG  + L LWDTAGQE + + + P  YR     +  + +    S++ +   WI E   Y   A  +P ILVG K DL+D  +
Sbjct:   14 RVFKIIVIGDSDVGKTCLTYRFCTGKFPEKTEATIGVDFRERTLDIDGEQIKLQLWDTAGQERFRKSMVPHYYRNVHAVVFTYDVTKGRSFQGL-PSWIEECERYSLNASEIPRILVGNKCDLKDQAE 140          
BLAST of DR404408 vs. ExPASy Swiss-Prot
Match: RAB19_HUMAN (Ras-related protein Rab-19 OS=Homo sapiens GN=RAB19 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.706e-13
Identity = 40/126 (31.75%), Postives = 69/126 (54.76%), Query Frame = 3
Query:  312 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLDLRDDKQFFID 683
            K + +GD  VGKTC++  + S  +      T+  +F+   + +DG  V + +WDTAGQE +  +    YR A   I+A+ L  ++++E++   WI E+  Y A  V I+L+G K DL + +    +
Sbjct:   19 KIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLDIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESI-PHWIHEIEKYGAANVVIMLIGNKCDLWEKRHVLFE 143          
The following BLAST results are available for this feature:
BLAST of DR404408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAP1B_CYPCA4.706e-1330.52Ras-related protein Rap-1b OS=Cyprinus carpio GN=r... [more]
RABQ_DICDI4.706e-1329.51Ras-related protein RabQ OS=Dictyostelium discoide... [more]
RAB5C_CHICK4.706e-1335.90Ras-related protein Rab-5C OS=Gallus gallus GN=RAB... [more]
RAB3D_RAT4.706e-1332.31GTP-binding protein Rab-3D OS=Rattus norvegicus GN... [more]
RAB3D_MOUSE4.706e-1332.31Ras-related protein Rab-3D OS=Mus musculus GN=Rab3... [more]
RAB3D_HUMAN4.706e-1332.31Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3... [more]
RAB34_RAT4.706e-1335.82Ras-related protein Rab-34 OS=Rattus norvegicus GN... [more]
RAB34_PIG4.706e-1335.82Ras-related protein Rab-34 OS=Sus scrofa GN=RAB34 ... [more]
RAB33_CIOIN4.706e-1332.81Putative Ras-related protein Rab-33 OS=Ciona intes... [more]
RAB19_HUMAN4.706e-1331.75Ras-related protein Rab-19 OS=Homo sapiens GN=RAB1... [more]

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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243D20 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243D20 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404408 ID=DR404408; Name=DR404408; organism=Citrus sinensis; type=EST; length=765bp
GGGGGCCATCCCTCGCTTTCTTTTTTTGGTTGGCATTGTTGCTTTCGCCG
CTGCTCTCTCTCTCTCTCTCTCTGTCTCTCTGCAGATTAGGGTTTAATTA
CCTTCGCTACCTTAATTCAAGACTTCTTTTCACTCAATTCCTGAGCTCCC
GTTGACGAACTGAGTTGTTCTCTTTTAGTCTTCGAAATGAGTGAAGTCTG
TGGCAAGAAGTGCACGTAAAGAACCTGAGCAGTCTTCCAAGGGCATTGTC
GGAATAAACTAAAAAAGAGAATAGAGATCTGGTGGCGCAAATGAGCGCGT
CGAGGTTCATAAAGTGCGTCACTGTCGGTGACGGCGCCGTCGGAAAAACT
TGCATGCTTATTTCTTACACCAGCAACACTTTCCCAACGGACTATGTGCC
AACTGTCTTTGACAATTTCAGTGCGAATGTGGTTGTTGATGGGAGTACGG
TCAACTTAGGGTTATGGGACACTGCTGGTCAGGAGGATTACAATAGATTG
AGACCGTTAAGTTATAGAGGAGCTGATGTGTTTATTCTTGCATTCTCACT
GATTAGCAAGGCCAGCTATGAAAATGTCGCCAAGAAGTGGATTCCAGAAC
TGAGGCACTATGCGCCTGGTGTTCCAATAATTCTTGTTGGGACTAAGCTA
GATCTTCGGGATGATAAGCAGTTCTTTATTGATCATCCAGGTGCAGTACC
AATTACTACAGCTCAGGGAGAGGAACTGAGGAAGCTGATTGGATCTCCTG
CATACATCGAATGTA
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