CX070242

Overview
NameCX070242
Unique NameCX070242
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070242 vs. ExPASy Swiss-Prot
Match: ARF3_PONAB (ADP-ribosylation factor 3 OS=Pongo abelii GN=ARF3 PE=2 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 1.346e-27
Identity = 63/190 (33.16%), Postives = 105/190 (55.26%), Query Frame = -3
Query:  228 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 791
            M ++F  L K +  K E  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L ++L  ++L+ A LL+ ANKQDLP+A++A E+   L L  L  R    +A     G G+ E ++WL   ++  K
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNKK 181          
BLAST of CX070242 vs. ExPASy Swiss-Prot
Match: ARF3_MOUSE (ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.346e-27
Identity = 63/190 (33.16%), Postives = 105/190 (55.26%), Query Frame = -3
Query:  228 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 791
            M ++F  L K +  K E  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L ++L  ++L+ A LL+ ANKQDLP+A++A E+   L L  L  R    +A     G G+ E ++WL   ++  K
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNKK 181          
BLAST of CX070242 vs. ExPASy Swiss-Prot
Match: ARF3_HUMAN (ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.346e-27
Identity = 63/190 (33.16%), Postives = 105/190 (55.26%), Query Frame = -3
Query:  228 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 791
            M ++F  L K +  K E  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L ++L  ++L+ A LL+ ANKQDLP+A++A E+   L L  L  R    +A     G G+ E ++WL   ++  K
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNKK 181          
BLAST of CX070242 vs. ExPASy Swiss-Prot
Match: ARF3_BOVIN (ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE=2 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 1.346e-27
Identity = 63/190 (33.16%), Postives = 105/190 (55.26%), Query Frame = -3
Query:  228 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 791
            M ++F  L K +  K E  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L ++L  ++L+ A LL+ ANKQDLP+A++A E+   L L  L  R    +A     G G+ E ++WL   ++  K
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNKK 181          
BLAST of CX070242 vs. ExPASy Swiss-Prot
Match: ARF2_YEAST (ADP-ribosylation factor 2 OS=Saccharomyces cerevisiae GN=ARF2 PE=1 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 1.346e-27
Identity = 62/175 (35.43%), Postives = 99/175 (56.57%), Query Frame = -3
Query:  252 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 770
            L+  +F   E  +L++G+D AGKTT+L KLK   V + +         PT+G N+  ++  N     WD+GGQ  +RS+W  YY     V+FVID+   SR  +++  ++++L  ++L+ A  L+ ANKQDLP+A+SA E+   L L  +  R    ++     G G+ E +EWL
Sbjct:    8 LFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTI---------PTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQSTCATSGEGLYEGLEWL 173          
BLAST of CX070242 vs. ExPASy Swiss-Prot
Match: ARL1_HUMAN (ADP-ribosylation factor-like protein 1 OS=Homo sapiens GN=ARL1 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.758e-27
Identity = 68/185 (36.76%), Postives = 102/185 (55.14%), Query Frame = -3
Query:  237 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVME 791
            M   F  ++  +F   E  +LILG+D AGKTT+L +L+ V   V        +PT+G N+  +   N K   WDLGGQ  +R  W  YY    AV++V+D+    R   SK+ L  +L  E+L+ A L++ ANKQD+  A+++ E+A  L L  L +R       S   G G+ E++EWLVE ++
Sbjct:    1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQ-VGEVVT------TIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK 178          
BLAST of CX070242 vs. ExPASy Swiss-Prot
Match: ARF1_PLAFO (ADP-ribosylation factor 1 OS=Plasmodium falciparum (isolate NF54) GN=ARF1 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.758e-27
Identity = 61/183 (33.33%), Postives = 102/183 (55.74%), Query Frame = -3
Query:  228 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 770
            L+  +F K +  +L++G+D AGKTT+L K+K   V + +         PT+G N+  +E  N     WD+GGQ  +R +W  YY     ++FV+D+    R +D++  L +++  E+L+ A +L+ ANKQDLP+A+SA E+   L L  + ER    ++     G G+ E  +WL   +  +K
Sbjct:    8 LFNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTTI---------PTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREGLHRMINEEELKDAIILVFANKQDLPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWLTTHLNNAK 181          
BLAST of CX070242 vs. ExPASy Swiss-Prot
Match: ARL2_DROME (ADP-ribosylation factor-like protein 2 OS=Drosophila melanogaster GN=Arf84F PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 2.296e-27
Identity = 65/165 (39.39%), Postives = 95/165 (57.58%), Query Frame = -3
Query:  249 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV 743
            E  +L+LG+D AGKTT+L++         G P D I PT+G NI  +E +   L  WD+GGQ  LRS W  Y+E    +V+V+D+A   R E     L+ +L+ E L GA LL+L NKQDLP A+S++E+   L L+ +     +   VS   G  +  S++WL+
Sbjct:   16 EMRILLLGLDNAGKTTILKRFN-------GEPIDTISPTLGFNIKTLEHNGYTLNMWDVGGQKSLRSYWRNYFESTDGLVWVVDSADRMRLESCGQELQVLLQEERLAGATLLVLCNKQDLPGALSSNEIKEILHLEDITTHHWLVAGVSAVTGEKLLSSMDWLI 173          
BLAST of CX070242 vs. ExPASy Swiss-Prot
Match: ARF4_RAT (ADP-ribosylation factor 4 OS=Rattus norvegicus GN=Arf4 PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 2.296e-27
Identity = 64/184 (34.78%), Postives = 103/184 (55.98%), Query Frame = -3
Query:  225 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSKR 770
            L+  +F K +  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R ++    L+K+L  ++LQ A LL+ ANKQDLP+A++  E+   L L+ L  R    +A     G G+ E ++WL    E SKR
Sbjct:    8 LFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAAVLQKMLLEDELQDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSN--ELSKR 180          
BLAST of CX070242 vs. ExPASy Swiss-Prot
Match: ARF4_MOUSE (ADP-ribosylation factor 4 OS=Mus musculus GN=Arf4 PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 2.296e-27
Identity = 64/184 (34.78%), Postives = 103/184 (55.98%), Query Frame = -3
Query:  225 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSKR 770
            L+  +F K +  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R ++    L+K+L  ++LQ A LL+ ANKQDLP+A++  E+   L L+ L  R    +A     G G+ E ++WL    E SKR
Sbjct:    8 LFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAAVLQKMLLEDELQDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSN--ELSKR 180          
The following BLAST results are available for this feature:
BLAST of CX070242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
ARF3_PONAB1.346e-2733.16ADP-ribosylation factor 3 OS=Pongo abelii GN=ARF3 ... [more]
ARF3_MOUSE1.346e-2733.16ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 ... [more]
ARF3_HUMAN1.346e-2733.16ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 ... [more]
ARF3_BOVIN1.346e-2733.16ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE... [more]
ARF2_YEAST1.346e-2735.43ADP-ribosylation factor 2 OS=Saccharomyces cerevis... [more]
ARL1_HUMAN1.758e-2736.76ADP-ribosylation factor-like protein 1 OS=Homo sap... [more]
ARF1_PLAFO1.758e-2733.33ADP-ribosylation factor 1 OS=Plasmodium falciparum... [more]
ARL2_DROME2.296e-2739.39ADP-ribosylation factor-like protein 2 OS=Drosophi... [more]
ARF4_RAT2.296e-2734.78ADP-ribosylation factor 4 OS=Rattus norvegicus GN=... [more]
ARF4_MOUSE2.296e-2734.78ADP-ribosylation factor 4 OS=Mus musculus GN=Arf4 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_15F05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15F05-L9-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070242 ID=CX070242; Name=CX070242; organism=Citrus sinensis; type=EST; length=841bp
TTTTTTTTTTTTTTTCAAGAATTAAGACTATTTGAATCCCACAACAATTA
AAACAAGAAAGCACCGATTGGTAGAATCAACCTCTAATCATGGCAAATTT
TAATGTCAATCCTGATTTATTTACAGAAGCTACAAAAGGCAGAGGACATC
AGCTGTGATTTAATATAATGTTCCTACTAAACTGAACCAGTACTTGCACC
AGCACGAGCTCTCAACATTTCAGTTCTCTTGCTCCTCTCCATTACCTCGA
CCAACCACTCTACACTTTCTTTTATTCCGAATCCATCATAACCTGACACT
GCTTCAAACATGCAAACCCGTTCATCCAACTTCTTAAGGTCTAGATATCG
TGCTAGTTCATCAGCTGATACAGCATCAGGAAGATCCTGTTTGTTTGCTA
GTATCAAAAGTGGCGCTCCTTGCAAATCCTCATTCCGAAGAACCTTTTCT
AGAGCAGTTTTTGAATCTTCAAAACGTGAAGGGCAAGCAGCATCAATTAC
AAATACCACAGCATGTGCCTCTTCATAATATTTCTCCCAAATTGAACGAA
GGCCAGGCTGACCACCCAGATCCCAGAAGACCAGCTTTGAATTTGAAACT
TCAATACGACCAATATTCAGTCCCACAGTAGGAACAATTCGATCAGGTGG
GAGGCCTTCCACATTTGAGTAGACAGACTTCAACTTCTCCAACAAAGTCG
TTTTCCCAGCCTTGTCAATTCCAAGAATGAGCACATGAAACTCAGTCTTA
GTAAATATATACTTCCAAAGTCCATAAAACAGCGAGAACATCTCTAACTT
CTTTAACGTTAATTTGTATTTATTCCCGCTAACCTTCAACT
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