CX070242

Overview
NameCX070242
Unique NameCX070242
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070242 vs. ExPASy Swiss-Prot
Match: ARF5_RAT (ADP-ribosylation factor 5 OS=Rattus norvegicus GN=Arf5 PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 3.916e-27
Identity = 64/184 (34.78%), Postives = 104/184 (56.52%), Query Frame = -3
Query:  225 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSKR 770
            L+  IF K +  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R ++S   L+K+L+ ++L+ A LL+ ANKQD+P+A+   EL   L L+ L  R    +A     G G+ + ++WL    E SKR
Sbjct:    8 LFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSH--ELSKR 180          
BLAST of CX070242 vs. ExPASy Swiss-Prot
Match: ARF5_MOUSE (ADP-ribosylation factor 5 OS=Mus musculus GN=Arf5 PE=2 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 3.916e-27
Identity = 64/184 (34.78%), Postives = 104/184 (56.52%), Query Frame = -3
Query:  225 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSKR 770
            L+  IF K +  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R ++S   L+K+L+ ++L+ A LL+ ANKQD+P+A+   EL   L L+ L  R    +A     G G+ + ++WL    E SKR
Sbjct:    8 LFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSH--ELSKR 180          
BLAST of CX070242 vs. ExPASy Swiss-Prot
Match: ARF5_HUMAN (ADP-ribosylation factor 5 OS=Homo sapiens GN=ARF5 PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 3.916e-27
Identity = 64/184 (34.78%), Postives = 104/184 (56.52%), Query Frame = -3
Query:  225 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSKR 770
            L+  IF K +  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R ++S   L+K+L+ ++L+ A LL+ ANKQD+P+A+   EL   L L+ L  R    +A     G G+ + ++WL    E SKR
Sbjct:    8 LFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSH--ELSKR 180          
BLAST of CX070242 vs. ExPASy Swiss-Prot
Match: ARF4_XENLA (ADP-ribosylation factor 4 OS=Xenopus laevis GN=arf4 PE=2 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 3.916e-27
Identity = 63/184 (34.24%), Postives = 105/184 (57.07%), Query Frame = -3
Query:  225 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSKR 770
            L+  +F K +  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R +++   L+K+L+ ++L+ A LL+ ANKQDLP+A++  E+   L L+ L  R    +A     G G+ E ++WL    E SKR
Sbjct:    8 LFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEAAEELQKMLQEDELRDAVLLVFANKQDLPNAMAISEMTDKLTLQTLRNRTWYVQATCATQGTGLYEGLDWLSN--ELSKR 180          
BLAST of CX070242 vs. ExPASy Swiss-Prot
Match: ARL3_HUMAN (ADP-ribosylation factor-like protein 3 OS=Homo sapiens GN=ARL3 PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 5.114e-27
Identity = 65/173 (37.57%), Postives = 100/173 (57.80%), Query Frame = -3
Query:  225 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSKR 743
            E  +L+LG+D AGKTTLL++L S     E +    I PT G NI  ++    KL  WD+GGQ  +R  W+ Y+E    +++VID+A   RFE++   L ++L  E L   P+LI ANKQDL  A  A E+A  L+L  + +RV   ++ S   G G+++ + W+ + +   K+
Sbjct:   17 EVRILLLGLDNAGKTTLLKQLAS-----EDI--SHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWKNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAKKK 182          
BLAST of CX070242 vs. ExPASy Swiss-Prot
Match: ARF4_BOVIN (ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE=2 SV=3)

HSP 1 Score: 121.709 bits (304), Expect = 5.114e-27
Identity = 63/184 (34.24%), Postives = 104/184 (56.52%), Query Frame = -3
Query:  225 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSKR 770
            L+  +F K +  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R ++    L+K+L+ ++L+ A LL+ ANKQDLP+A++  E+   L L+ L  R    +A     G G+ E ++WL    E SKR
Sbjct:    8 LFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAEELQKMLQEDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSN--ELSKR 180          
BLAST of CX070242 vs. ExPASy Swiss-Prot
Match: ARL3_PIG (ADP-ribosylation factor-like protein 3 OS=Sus scrofa GN=ARL3 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.680e-27
Identity = 65/173 (37.57%), Postives = 99/173 (57.23%), Query Frame = -3
Query:  225 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSKR 743
            E  +L+LG+D AGKTTLL++L S     E +    I PT G NI  ++    KL  WD+GGQ  +R  W  Y+E    +++VID+A   RFE++   L ++L  E L   P+LI ANKQDL  A  A E+A  L+L  + +RV   ++ S   G G+++ + W+ + +   K+
Sbjct:   17 EVRILLLGLDNAGKTTLLKQLAS-----EDI--SHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAKKK 182          
BLAST of CX070242 vs. ExPASy Swiss-Prot
Match: ARL3_MOUSE (ADP-ribosylation factor-like protein 3 OS=Mus musculus GN=Arl3 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.680e-27
Identity = 65/173 (37.57%), Postives = 99/173 (57.23%), Query Frame = -3
Query:  225 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSKR 743
            E  +L+LG+D AGKTTLL++L S     E +    I PT G NI  ++    KL  WD+GGQ  +R  W  Y+E    +++VID+A   RFE++   L ++L  E L   P+LI ANKQDL  A  A E+A  L+L  + +RV   ++ S   G G+++ + W+ + +   K+
Sbjct:   17 EVRILLLGLDNAGKTTLLKQLAS-----EDI--SHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAKKK 182          
BLAST of CX070242 vs. ExPASy Swiss-Prot
Match: ARL3_DANRE (ADP-ribosylation factor-like protein 3 OS=Danio rerio GN=arl3 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.680e-27
Identity = 63/173 (36.42%), Postives = 99/173 (57.23%), Query Frame = -3
Query:  225 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSKR 743
            E  +L+LG+D  GKTTLL++L S     E +    I PT G NI  ++    KL  WD+GGQ  +R  W  Y+E    +++VID+A   RFE++   L ++L  E L G P+L+ ANKQDL  A  A E+A  L+L  + +RV   ++ S   G G+++ + W+ + +   ++
Sbjct:   17 EVRILLLGLDNGGKTTLLKQLAS-----EDIT--HITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEETGQELAELLDEEKLSGVPVLVFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKSVNAKRK 182          
BLAST of CX070242 vs. ExPASy Swiss-Prot
Match: ARF_MAIZE (ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 6.680e-27
Identity = 60/178 (33.71%), Postives = 101/178 (56.74%), Query Frame = -3
Query:  252 FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 779
            F  L+  +F K E  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L ++L  ++L+ A LL+ ANKQDLP+A++A E+   L L  L +R    ++     G G+ E ++WL
Sbjct:    5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLNSLRQRHWYIQSTCATTGEGLYEGLDWL 173          
The following BLAST results are available for this feature:
BLAST of CX070242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
ARF5_RAT3.916e-2734.78ADP-ribosylation factor 5 OS=Rattus norvegicus GN=... [more]
ARF5_MOUSE3.916e-2734.78ADP-ribosylation factor 5 OS=Mus musculus GN=Arf5 ... [more]
ARF5_HUMAN3.916e-2734.78ADP-ribosylation factor 5 OS=Homo sapiens GN=ARF5 ... [more]
ARF4_XENLA3.916e-2734.24ADP-ribosylation factor 4 OS=Xenopus laevis GN=arf... [more]
ARL3_HUMAN5.114e-2737.57ADP-ribosylation factor-like protein 3 OS=Homo sap... [more]
ARF4_BOVIN5.114e-2734.24ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE... [more]
ARL3_PIG6.680e-2737.57ADP-ribosylation factor-like protein 3 OS=Sus scro... [more]
ARL3_MOUSE6.680e-2737.57ADP-ribosylation factor-like protein 3 OS=Mus musc... [more]
ARL3_DANRE6.680e-2736.42ADP-ribosylation factor-like protein 3 OS=Danio re... [more]
ARF_MAIZE6.680e-2733.71ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_15F05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15F05-L9-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070242 ID=CX070242; Name=CX070242; organism=Citrus sinensis; type=EST; length=841bp
TTTTTTTTTTTTTTTCAAGAATTAAGACTATTTGAATCCCACAACAATTA
AAACAAGAAAGCACCGATTGGTAGAATCAACCTCTAATCATGGCAAATTT
TAATGTCAATCCTGATTTATTTACAGAAGCTACAAAAGGCAGAGGACATC
AGCTGTGATTTAATATAATGTTCCTACTAAACTGAACCAGTACTTGCACC
AGCACGAGCTCTCAACATTTCAGTTCTCTTGCTCCTCTCCATTACCTCGA
CCAACCACTCTACACTTTCTTTTATTCCGAATCCATCATAACCTGACACT
GCTTCAAACATGCAAACCCGTTCATCCAACTTCTTAAGGTCTAGATATCG
TGCTAGTTCATCAGCTGATACAGCATCAGGAAGATCCTGTTTGTTTGCTA
GTATCAAAAGTGGCGCTCCTTGCAAATCCTCATTCCGAAGAACCTTTTCT
AGAGCAGTTTTTGAATCTTCAAAACGTGAAGGGCAAGCAGCATCAATTAC
AAATACCACAGCATGTGCCTCTTCATAATATTTCTCCCAAATTGAACGAA
GGCCAGGCTGACCACCCAGATCCCAGAAGACCAGCTTTGAATTTGAAACT
TCAATACGACCAATATTCAGTCCCACAGTAGGAACAATTCGATCAGGTGG
GAGGCCTTCCACATTTGAGTAGACAGACTTCAACTTCTCCAACAAAGTCG
TTTTCCCAGCCTTGTCAATTCCAAGAATGAGCACATGAAACTCAGTCTTA
GTAAATATATACTTCCAAAGTCCATAAAACAGCGAGAACATCTCTAACTT
CTTTAACGTTAATTTGTATTTATTCCCGCTAACCTTCAACT
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