CX070216

Overview
NameCX070216
Unique NameCX070216
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBA_ARCFU (GTP cyclohydrolase-2 OS=Archaeoglobus fulgidus GN=ribA PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.522e-54
Identity = 110/219 (50.23%), Postives = 153/219 (69.86%), Query Frame = 2
Query:    8 EFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPT-MWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 661
            +FAK  ++ +  I D+I +R K +K+V+R   A +PT  +G F A  Y++ L  I  +A+VKG + +G D+LVR+HSECLTGD+F S RCDCGDQL  A++ I+  G+GV +Y+RGHEGRGIGL +KL AY LQ++G+DTV+AN ELG P D R YGI AQ+L DL V++++L+TNNP K   LK YG  +  R P+     + N  YL+ K+ KMGH+
Sbjct:  159 KFAKEHSMPVFRIKDMIEFRIKSEKIVERVIEATLPTKFYGTFRAVGYKTPLGEI--VALVKGRVDEG-DVLVRIHSECLTGDVFHSLRCDCGDQLENALKMIDREGKGVAIYMRGHEGRGIGLINKLMAYKLQEEGKDTVDANIELGFPPDMRSYGIAAQILMDLKVKSIRLLTNNPLKIEELKKYGFKIV-REPIEVEPCEVNLPYLKAKKDKMGHL 373          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBA_STRCO (GTP cyclohydrolase-2 OS=Streptomyces coelicolor GN=ribA PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 5.414e-52
Identity = 103/191 (53.93%), Postives = 137/191 (71.73%), Query Frame = 2
Query:   86 VDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 658
            V+R     +PT++G F A+ Y     G E +A+V GD+G  +D+L R+HSECLTGD FGS  C+CG QLA A++Q+  AG G++VYLRGHEGRGIGL  KLRA  LQ +G DTVEAN  LGLPVD+R+YG+ A++L DLGVR+++LM+NNP K   L  +G+ VA +VPL+ P  + N  YL TKR ++ H
Sbjct:   18 VERIVVTPLPTVYGKFRAFGYFDHERGDEQVALVHGDLG-AEDVLTRLHSECLTGDAFGSQHCECGAQLASALRQVADAGSGIVVYLRGHEGRGIGLLAKLRAMALQAEGLDTVEANLALGLPVDARDYGVAARILDDLGVRSVRLMSNNPRKREALVRHGIRVAEQVPLLIPPCESNITYLRTKRERLDH 207          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBA_NEIMA (GTP cyclohydrolase-2 OS=Neisseria meningitidis serogroup A GN=ribA PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.986e-51
Identity = 99/194 (51.03%), Postives = 134/194 (69.07%), Query Frame = 2
Query:   80 KLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 661
            +L++  ++ R+PT WG FT + +     G EH+A+  GD  DG  +L R+HSECLTGD   S +CDCG QL  AM+ ++A GRG++VYLR  EGRGIGL +K+RAY+LQD G DTVEAN  LGLPVD+R++ +   +   LG+R++KL+TNNP K   LK  G+ V  R+PL      ENKRYL+TK  K+GH+
Sbjct:    3 ELLNYVASCRLPTEWGVFTMHGFEEA-GGQEHVALTVGDCSDGNPVLTRIHSECLTGDALFSKKCDCGPQLEAAMKAVQAEGRGIIVYLR-QEGRGIGLINKIRAYHLQDQGMDTVEANVALGLPVDARDFRLAQSIYEYLGIRSVKLLTNNPEKIQTLKDAGINVVERIPLHVGENLENKRYLQTKADKLGHL 194          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBA_NEIG1 (GTP cyclohydrolase-2 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=ribA PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.275e-50
Identity = 97/194 (50.00%), Postives = 135/194 (69.59%), Query Frame = 2
Query:   80 KLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 661
            +L+D  ++ R+PT WG FT + +    +G EH+A+  G+  DG  +L R+HSECLTGD   S +CDCG QL  AM+ ++A GRG++VYLR  EGRGIGL +K+RAY+LQ+ G DTVEAN  LGLPVD+R++ +   +   LG+R++KL+TNNP K   LK  G+ V  R+PL      EN+RYL+TK  K+GH+
Sbjct:    3 ELLDHVASCRLPTEWGVFTMHGFEEA-NGQEHVALTVGNCSDGNPVLTRIHSECLTGDALFSRKCDCGPQLEAAMRAVQAEGRGIIVYLR-QEGRGIGLINKIRAYHLQEQGMDTVEANLALGLPVDARDFRLAQSIYEYLGIRSVKLLTNNPEKIQTLKDAGINVVERIPLHVGENLENERYLQTKADKLGHL 194          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBA_AZOVD (GTP cyclohydrolase-2 OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=ribA PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.275e-50
Identity = 102/197 (51.78%), Postives = 130/197 (65.99%), Query Frame = 2
Query:   98 SAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGLESNGRL 688
            +A+++PT +G FT + +     G EH+A+  G + DG  +L R+HSECLTGD   S RCDCG QL  A++ I A GRGVL+YLR  EGRGIGL +K+RAY LQD G DTVEANE LG   D R+YGI   ML  LG+  +KLMTNNP K   L+G G+ V  RVPL T +   N++YL TK  K+GH+ G    G +
Sbjct:    7 AASKLPTPFGVFTMHGFLDEATGKEHVALTLGTVDDGAPVLGRLHSECLTGDALFSLRCDCGFQLEAALRAIAAEGRGVLLYLR-QEGRGIGLLNKIRAYKLQDAGADTVEANERLGFRADQRDYGICKPMLEHLGITAIKLMTNNPRKVKALEGAGIQVTERVPLQTGLNPHNQKYLATKAGKLGHLLGSLHQGEV 202          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBA_NEIMF (GTP cyclohydrolase-2 OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=ribA PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.880e-50
Identity = 96/194 (49.48%), Postives = 134/194 (69.07%), Query Frame = 2
Query:   80 KLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 661
            ++++  ++ R+PT WG FT + +    +G EH+A+  G+  DG  +L R+HSECLTGD   S +CDCG QL  AM+ ++  GRG++VYLR  EGRGIGL +K+RAY+LQD G DTVEAN  LGLPVD+R++ +   +   LG+R++KL+TNNP K   LK  G+ V  R+PL      ENKRYL+TK  K+GH+
Sbjct:    3 EMLNHVASCRLPTEWGVFTMHGFEEA-NGQEHVALTVGNFSDGNPVLTRIHSECLTGDALFSRKCDCGPQLEAAMRAVQTEGRGIIVYLR-QEGRGIGLINKIRAYHLQDQGMDTVEANLALGLPVDARDFRLAQSIYEYLGIRSVKLLTNNPEKIQTLKDAGINVVERIPLHVGENLENKRYLQTKADKLGHL 194          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBA_NEIMB (GTP cyclohydrolase-2 OS=Neisseria meningitidis serogroup B GN=ribA PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.880e-50
Identity = 96/194 (49.48%), Postives = 134/194 (69.07%), Query Frame = 2
Query:   80 KLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 661
            ++++  ++ R+PT WG FT + +    +G EH+A+  G+  DG  +L R+HSECLTGD   S +CDCG QL  AM+ ++  GRG++VYLR  EGRGIGL +K+RAY+LQD G DTVEAN  LGLPVD+R++ +   +   LG+R++KL+TNNP K   LK  G+ V  R+PL      ENKRYL+TK  K+GH+
Sbjct:    3 EMLNHVASCRLPTEWGVFTMHGFEEA-NGQEHVALTVGNFSDGNPVLTRIHSECLTGDALFSRKCDCGPQLEAAMRAVQTEGRGIIVYLR-QEGRGIGLINKIRAYHLQDQGMDTVEANLALGLPVDARDFRLAQSIYEYLGIRSVKLLTNNPEKIQTLKDAGINVVERIPLHVGENLENKRYLQTKADKLGHL 194          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBA_NEIM0 (GTP cyclohydrolase-2 OS=Neisseria meningitidis serogroup C (strain 053442) GN=ribA PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.880e-50
Identity = 96/194 (49.48%), Postives = 134/194 (69.07%), Query Frame = 2
Query:   80 KLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 661
            ++++  ++ R+PT WG FT + +    +G EH+A+  G+  DG  +L R+HSECLTGD   S +CDCG QL  AM+ ++  GRG++VYLR  EGRGIGL +K+RAY+LQD G DTVEAN  LGLPVD+R++ +   +   LG+R++KL+TNNP K   LK  G+ V  R+PL      ENKRYL+TK  K+GH+
Sbjct:    3 EMLNHVASCRLPTEWGVFTMHGFEEA-NGQEHVALTVGNFSDGNPVLTRIHSECLTGDALFSRKCDCGPQLEAAMRAVQTEGRGIIVYLR-QEGRGIGLINKIRAYHLQDQGMDTVEANLALGLPVDARDFRLAQSIYEYLGIRSVKLLTNNPEKIQTLKDAGINVVERIPLHVGENLENKRYLQTKADKLGHL 194          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBA_PSEPK (GTP cyclohydrolase-2 OS=Pseudomonas putida (strain KT2440) GN=ribA PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.129e-49
Identity = 102/197 (51.78%), Postives = 127/197 (64.47%), Query Frame = 2
Query:   98 SAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGLESNGRL 688
            +A+++PT +  FT + +     G EH+ +  GDI DGQ +L R+HSECLTGD   S RCDCG QL  A+Q I   GRGVL+YLR  EGRGIGL +K+RAY LQD G DTVEANE LG   D R+Y I   ML  LGV++++LMTNNP K   L    + VA RVPL T     N+ YL TK  K+GH+ G E  G +
Sbjct:    7 AASKLPTPFATFTMHGFLDEATGREHVVLSLGDIADGQPVLGRLHSECLTGDALFSQRCDCGSQLEAALQAIAREGRGVLLYLR-QEGRGIGLLNKIRAYELQDGGADTVEANERLGFAADQRDYAICLPMLEHLGVKSLRLMTNNPRKVKALTDMNIVVAERVPLHTGHNPHNRYYLATKAGKLGHMLGNEHQGEV 202          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBA_PSEP1 (GTP cyclohydrolase-2 OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=ribA PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.129e-49
Identity = 102/197 (51.78%), Postives = 127/197 (64.47%), Query Frame = 2
Query:   98 SAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGLESNGRL 688
            +A+++PT +  FT + +     G EH+ +  GDI DGQ +L R+HSECLTGD   S RCDCG QL  A+Q I   GRGVL+YLR  EGRGIGL +K+RAY LQD G DTVEANE LG   D R+Y I   ML  LGV++++LMTNNP K   L    + VA RVPL T     N+ YL TK  K+GH+ G E  G +
Sbjct:    7 AASKLPTPFATFTMHGFLDEATGREHVVLSLGDIADGQPVLGRLHSECLTGDALFSQRCDCGSQLEAALQAIAREGRGVLLYLR-QEGRGIGLLNKIRAYELQDGGADTVEANERLGFAADQRDYAICLPMLEHLGVKSLRLMTNNPRKVKALTDMNIVVAERVPLHTGHNPHNRYYLATKAGKLGHMLGNEHQGEV 202          
The following BLAST results are available for this feature:
BLAST of CX070216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221
Match NameE-valueIdentityDescription
RIBA_ARCFU1.522e-5450.23GTP cyclohydrolase-2 OS=Archaeoglobus fulgidus GN=... [more]
RIBA_STRCO5.414e-5253.93GTP cyclohydrolase-2 OS=Streptomyces coelicolor GN... [more]
RIBA_NEIMA5.986e-5151.03GTP cyclohydrolase-2 OS=Neisseria meningitidis ser... [more]
RIBA_NEIG12.275e-5050.00GTP cyclohydrolase-2 OS=Neisseria gonorrhoeae (str... [more]
RIBA_AZOVD2.275e-5051.78GTP cyclohydrolase-2 OS=Azotobacter vinelandii (st... [more]
RIBA_NEIMF3.880e-5049.48GTP cyclohydrolase-2 OS=Neisseria meningitidis ser... [more]
RIBA_NEIMB3.880e-5049.48GTP cyclohydrolase-2 OS=Neisseria meningitidis ser... [more]
RIBA_NEIM03.880e-5049.48GTP cyclohydrolase-2 OS=Neisseria meningitidis ser... [more]
RIBA_PSEPK1.129e-4951.78GTP cyclohydrolase-2 OS=Pseudomonas putida (strain... [more]
RIBA_PSEP11.129e-4951.78GTP cyclohydrolase-2 OS=Pseudomonas putida (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_15E03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15E03-J5-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070216 ID=CX070216; Name=CX070216; organism=Citrus sinensis; type=EST; length=790bp
GCTTCGTGAATTTGCTAAGAGGGAAAATTTAAAAATTATATCAATTGCTG
ATTTAATAAGGTATAGGAGGAAGAGAGATAAACTAGTAGATCGTTCTTCT
GCTGCAAGGATACCTACGATGTGGGGTCCATTTACTGCTTACTGTTACAG
ATCAATTTTGGATGGAATTGAGCATATAGCAATGGTTAAGGGTGACATTG
GGGATGGACAAGATATTCTTGTGAGAGTGCACTCAGAGTGTCTCACTGGA
GATATATTTGGATCAGCCAGATGTGATTGTGGTGATCAGCTTGCACTTGC
AATGCAGCAGATTGAGGCTGCTGGCAGGGGTGTATTAGTTTATCTCCGTG
GTCATGAGGGAAGGGGCATTGGTTTAGGCCACAAGCTTCGCGCTTATAAC
TTGCAGGACGATGGGCGTGATACAGTTGAAGCAAATGAGGAATTGGGATT
GCCTGTTGACTCACGGGAATATGGCATTGGTGCACAGATGCTAAGGGATC
TTGGTGTTCGAACAATGAAGCTGATGACAAATAACCCTTCGAAGTATGTT
GGACTCAAGGGTTATGGTTTGGCAGTTGCAGGAAGGGTTCCCCTAATAAC
TCCCATTAAAAAGGAAAACAAGAGATATCTGGAGACTAAACGTGCTAAAA
TGGGTCACATTTATGGGTTAGAATCTAATGGCCGGTTAACAAATCTCATT
AACGTTAACGGTAAGCCGAGTATCAAATCTTCATCTGATACTGTATCTGA
CTCGTAAGCTGCACTAATTTACTTGGTTTGGACACGTGAT
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