CX070032

Overview
NameCX070032
Unique NameCX070032
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length262
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070032 vs. ExPASy Swiss-Prot
Match: RL27_CANFA (60S ribosomal protein L27 OS=Canis familiaris GN=RPL27 PE=2 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 2.794e-13
Identity = 41/86 (47.67%), Postives = 53/86 (61.63%), Query Frame = -3
Query:    6 DDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDL-KVVVTADSLQSKDKKMIACKETK 260
            DD T +RP  H LVAGI + P KV      KK AK S++K+FVK+ +Y HLMPTRY++D+ L K VV  D  +    K  A +E K
Sbjct:   30 DDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAK 115          
BLAST of CX070032 vs. ExPASy Swiss-Prot
Match: RL27_BOVIN (60S ribosomal protein L27 OS=Bos taurus GN=RPL27 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.794e-13
Identity = 41/86 (47.67%), Postives = 53/86 (61.63%), Query Frame = -3
Query:    6 DDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDL-KVVVTADSLQSKDKKMIACKETK 260
            DD T +RP  H LVAGI + P KV      KK AK S++K+FVK+ +Y HLMPTRY++D+ L K VV  D  +    K  A +E K
Sbjct:   30 DDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAK 115          
BLAST of CX070032 vs. ExPASy Swiss-Prot
Match: RL27B_SCHPO (60S ribosomal protein L27-B OS=Schizosaccharomyces pombe GN=rpl27b PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.387e-12
Identity = 37/86 (43.02%), Postives = 54/86 (62.79%), Query Frame = -3
Query:    6 DDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVD-LKVVVTADSLQSKDKKMIACKETK 260
            D  ++  P GH +VAG+++ P KV     AK+ AK SRVK F+K+++Y HLMPTRY L++D LK +VT  +     ++  A K  K
Sbjct:   30 DQGSKSHPFGHAVVAGVERYPLKVTKSMGAKRIAKRSRVKPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSAAKKTVK 115          
The following BLAST results are available for this feature:
BLAST of CX070032 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RL27_CANFA2.794e-1347.6760S ribosomal protein L27 OS=Canis familiaris GN=R... [more]
RL27_BOVIN2.794e-1347.6760S ribosomal protein L27 OS=Bos taurus GN=RPL27 P... [more]
RL27B_SCHPO1.387e-1243.0260S ribosomal protein L27-B OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14D04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14D04-G8-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070032 ID=CX070032; Name=CX070032; organism=Citrus sinensis; type=EST; length=262bp
CGTTTCTTGGTCTCCTTGCAAGCTATCATCTTCTTGTCCTTGCTCTGGAG
GGAATCAGCCGTCACGACTACCTTCAAATCGACGTCGAGAGTGTAGCGCG
TGGGCATCAGGTGCTGGTAGCTGACCAACTTGACGAAGGCCTTGACGCGT
GACTACTTCGCTGTCTTCTTCGCCGAGTCCTTGTGGATCACTTTGCCCGG
TTACTTCTTTATCCCCGCTACCAGACAGTGCCCGTTCGGCCTCTCGCGGG
TCCTGTCGTCGA
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