CX069918

Overview
NameCX069918
Unique NameCX069918
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length782
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSA7_CARAU (Proteasome subunit alpha type-7 OS=Carassius auratus GN=psma7 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.720e-22
Identity = 57/156 (36.54%), Postives = 89/156 (57.05%), Query Frame = -1
Query:  321 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDD--ISREEAVQLALKVLSKTMDS 782
            KK  +KL Q   +  K+  +D+HV  A AG+ +DA I+IN ARV+ Q +    ++P+ VE + + +   KQ YTQ  G RPFG+S L  G+D +   +LY +DPSG Y  WK           +  L+++Y D+   S  +A++LA+K L + + S
Sbjct:   49 KKSVAKL-QEERTVRKICALDEHVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIATLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTDEAIASDNDAIKLAIKALLEVVQS 203          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSA5_TRYBB (Proteasome subunit alpha type-5 OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.720e-22
Identity = 64/194 (32.99%), Postives = 107/194 (55.15%), Query Frame = -1
Query:  216 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGG-----LRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLL 782
            K+V S L+  S S  K+ +ID H+   ++G+++DA IL++ ARV+AQ + + Y EPM VE    + CD    + + GG      RPFGVS L AG D+N G QL+ +DPSG Y  +            Q++  + Y  +++ EEA  L +++L + M+   LT   +E+A   ++P    + Q+   E + +++
Sbjct:   52 KRVPSTLVDPS-SVNKILEIDHHIGTVLSGMVADARILVDHARVEAQNHRFTYDEPMSVESCALATCDLSVQFGESGGRKKLMSRPFGVSLLIAGVDEN-GPQLWQTDPSGTYTRYDAQAIGGGAEAAQTVFSERYHRNMTVEEAENLTVQILRQVMEE-KLTKTSVEIA---IVPVSTGRLQIYDQEQIQRII 239          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSA7L_MOUSE (Proteasome subunit alpha type-7-like OS=Mus musculus GN=Psma8 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.471e-22
Identity = 56/156 (35.90%), Postives = 90/156 (57.69%), Query Frame = -1
Query:  321 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDI--SREEAVQLALKVLSKTMDS 782
            KK  +KL Q   +  K+  +DDHV  A AG+ +DA ++I+ ARV+ Q +    ++P+ VE + + +   KQ YTQ  G RPFG+S L  G+D +   +LY +DPSG Y  WK           +  L+++Y +D   + +EA++LA+K L + + S
Sbjct:   49 KKSVAKL-QDERTVRKICALDDHVCMAFAGLTADARVVISRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAISNDKEAIKLAIKALLEVVQS 203          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSMA1_HALVO (Proteasome subunit alpha 1 OS=Halobacterium volcanii GN=psmA1 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.757e-22
Identity = 61/160 (38.12%), Postives = 92/160 (57.50%), Query Frame = -1
Query:  282 LQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 761
            L   TS EK++K DDH+  A AG ++DA  LI+ AR Q+Q     Y EP+ +E L + + D  Q YTQ GG RPFGV+ L  G + N   +LY +DPSG    WK           Q  L+++++DD++ +E ++LAL+ ++ T D      D +++A V
Sbjct:   60 LMEPTSVEKIHKADDHIGIASAGHVADARQLIDFARHQSQVNRLRYGEPIGIETLTKEVTDHIQQYTQVGGARPFGVALLIGGVE-NGTPRLYETDPSGTPYEWKAVSIGADRGDHQEHLEENFRDDLTLDEGIELALEAIASTSDE-GTAPDGVDVATV 217          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSMA_METB6 (Proteasome subunit alpha OS=Methanoregula boonei (strain 6A8) GN=psmA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.274e-21
Identity = 54/148 (36.49%), Postives = 89/148 (60.14%), Query Frame = -1
Query:  339 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVL 782
            K+V+SKLL++S S EK++KID+H+  A +G++ DA  L++ AR++ Q    +Y E + VE L + LCD  Q  TQ+GG+RP+G + L AG       +L+ +DPSG    +K             + +++Y  D++ ++A+ L LK L
Sbjct:   53 KRVSSKLLESS-SIEKIFKIDEHIGVASSGLVGDARALVDRARIECQINRVSYDERIEVEALAKKLCDHMQTLTQYGGIRPYGTALLIAGVSDGES-RLFETDPSGTLLEYKATGIGIGRPAAMKVFEEEYTADLALKDAILLGLKAL 198          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSA2_ORYSJ (Proteasome subunit alpha type-2 OS=Oryza sativa subsp. japonica GN=PAB1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.664e-21
Identity = 60/189 (31.75%), Postives = 103/189 (54.50%), Query Frame = -1
Query:  216 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLL 782
            KK+ S +L   TS +K+  +  ++    +G+  D  +L+  +R QAQ+Y   Y+E +PV QLV+      Q +TQ GG+RPFGVS L AG+D N G QLY  DPSG+Y  WK           ++ L++ Y +D+  ++A+  A+  L +  +   ++++ +E+  +        +++V SP  +   L
Sbjct:   50 KKLPS-ILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDN-GPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGYEG-QISANNIEIGII----RSDREFKVLSPAEIKDFL 231          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSA2_ORYSI (Proteasome subunit alpha type-2 OS=Oryza sativa subsp. indica GN=PAB1 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.664e-21
Identity = 60/189 (31.75%), Postives = 103/189 (54.50%), Query Frame = -1
Query:  216 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLL 782
            KK+ S +L   TS +K+  +  ++    +G+  D  +L+  +R QAQ+Y   Y+E +PV QLV+      Q +TQ GG+RPFGVS L AG+D N G QLY  DPSG+Y  WK           ++ L++ Y +D+  ++A+  A+  L +  +   ++++ +E+  +        +++V SP  +   L
Sbjct:   50 KKLPS-ILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDN-GPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGYEG-QISANNIEIGII----RSDREFKVLSPAEIKDFL 231          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSMA_METMJ (Proteasome subunit alpha OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=psmA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.174e-21
Identity = 59/167 (35.33%), Postives = 93/167 (55.69%), Query Frame = -1
Query:  282 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 782
            K+VTS+LL+   S EK++KID H+  A +G++ DA  L++ ARV++Q    +Y EP+ VE L + LCD  Q YTQFGG RP+G + L AG       +L+ +DPSG    +K               + +Y++D     A++L +K L       + T  KL+++ +
Sbjct:   53 KRVTSRLLEP-VSIEKIFKIDAHIGVASSGLVGDARSLVDRARVESQINRVSYNEPINVEILAKKLCDHMQTYTQFGGARPYGTALLIAGVSDGEA-RLFETDPSGTLLEYKATGIGTGRPAVIKTFEDEYQEDADFSGAIRLGIKALH------AATEGKLDVSAI 211          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSA7B_ORYSJ (Proteasome subunit alpha type-7-B OS=Oryza sativa subsp. japonica GN=PAD1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.839e-21
Identity = 57/155 (36.77%), Postives = 90/155 (58.06%), Query Frame = -1
Query:  321 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGF-QLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDS 782
            KK T KL Q S S  K+  +D H+A A AG+ +DA +LIN ARV+ Q +    ++ + VE + + +   +Q YTQ GG+RPFG+S L  G+D       LY +DPSG +  WK           +  L+++YK + S +E ++LA++ L + ++S
Sbjct:   48 KKSTPKL-QDSRSVRKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDAVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTDKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK-ETSGKETIKLAIRALLEVVES 200          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSA7B_ORYSI (Proteasome subunit alpha type-7-B OS=Oryza sativa subsp. indica GN=PAD1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.839e-21
Identity = 57/155 (36.77%), Postives = 90/155 (58.06%), Query Frame = -1
Query:  321 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGF-QLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDS 782
            KK T KL Q S S  K+  +D H+A A AG+ +DA +LIN ARV+ Q +    ++ + VE + + +   +Q YTQ GG+RPFG+S L  G+D       LY +DPSG +  WK           +  L+++YK + S +E ++LA++ L + ++S
Sbjct:   48 KKSTPKL-QDSRSVRKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDAVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTDKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK-ETSGKETIKLAIRALLEVVES 200          
The following BLAST results are available for this feature:
BLAST of CX069918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
PSA7_CARAU5.720e-2236.54Proteasome subunit alpha type-7 OS=Carassius aurat... [more]
PSA5_TRYBB5.720e-2232.99Proteasome subunit alpha type-5 OS=Trypanosoma bru... [more]
PSA7L_MOUSE7.471e-2235.90Proteasome subunit alpha type-7-like OS=Mus muscul... [more]
PSMA1_HALVO9.757e-2238.13Proteasome subunit alpha 1 OS=Halobacterium volcan... [more]
PSMA_METB61.274e-2136.49Proteasome subunit alpha OS=Methanoregula boonei (... [more]
PSA2_ORYSJ1.664e-2131.75Proteasome subunit alpha type-2 OS=Oryza sativa su... [more]
PSA2_ORYSI1.664e-2131.75Proteasome subunit alpha type-2 OS=Oryza sativa su... [more]
PSMA_METMJ2.174e-2135.33Proteasome subunit alpha OS=Methanoculleus marisni... [more]
PSA7B_ORYSJ2.839e-2136.77Proteasome subunit alpha type-7-B OS=Oryza sativa ... [more]
PSA7B_ORYSI2.839e-2136.77Proteasome subunit alpha type-7-B OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13F07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13F07-K13-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069918 ID=CX069918; Name=CX069918; organism=Citrus sinensis; type=EST; length=782bp
TTTTTTTTTTTTTTTTGCATCCAACATCATAACATCTGAAATTACCAAGC
TTCTGATCATCAACATCAAACACATCGATCTGCAGTTCTTTGGGCAAAAA
GCATAAAAGTAATACAAGTACTGTCCAAATTGCTTTGAAATTAAGTTATA
ATGAAAGCATGGAAGATCTTCATTCAAGAAGTCTCAGCAGCAGGTTGGGT
TACTCCATGCTTCACCAACAACTTGCTCAGAGCTTCGGGTGAGCAAACTT
GGTACTTCACTTTGCCAGAAGGCATCAGGAAAACCTCAGCTAATTCAAGC
TTATCAGAAGTAAGACTGGTGCTGTCCATGGTTTTGCTGAGCACCTTCAG
TGCTAGTTGAACTGCTTCTTCCCTTGAAATATCATCCTTGTAATCTTGTT
TGAGGATTGATTGTGCAGCCTGGTTATTTGCACCAATAGCAGCAGCTTTC
CAACCACCATAGTTTCCACTAGGATCACTCATGTAAAGTTGGAAGCCATA
ATTTTTGTCCCACCCTGCAAAAAGAAATGAAACACCAAAGGGGCGGAGAC
CGCCAAACTGGGTGTAACCTTGCTTTGTATCACAAAGAGATTGAACAAGC
TGCTCAACAGGCATTGGCTCTTGGTAGGCATATGTGTAACGTTGGGCTTG
GACCCTGGCAGTGTTGATTAGGATGTTGGCATCAGACATTATTCCAGCTA
CGGCACAAGCAACATGATCATCAATCTTGTACATCTTCTCAGTGGAAGTT
GAGGTTTGCAGGAGCTTCGAAGTAACCTTCTT
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