CX069907

Overview
NameCX069907
Unique NameCX069907
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069907 vs. ExPASy Swiss-Prot
Match: 4CLL9_ARATH (4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana GN=4CLL9 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.482e-23
Identity = 47/82 (57.32%), Postives = 68/82 (82.93%), Query Frame = -1
Query:  363 ELEGLLVSHPEILDAVVIPFPDAEAGEVPIAYVVRSPNSSLTEEDVQKFIAKQVAPFKRLRRVTFINSVPKSASGKILRREL 608
            ELE +L S+P+++DA V+PFPD +AGE+P+A++VR P S+L E  +  F+AKQV P+K++RRV FIN++PK+ +GKILRREL
Sbjct:  469 ELEQILHSNPDVIDAAVVPFPDEDAGEIPMAFIVRKPGSNLNEAQIIDFVAKQVTPYKKVRRVAFINAIPKNPAGKILRREL 550          
BLAST of CX069907 vs. ExPASy Swiss-Prot
Match: 4CL2_ORYSJ (Probable 4-coumarate--CoA ligase 2 OS=Oryza sativa subsp. japonica GN=4CL2 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 1.936e-23
Identity = 53/88 (60.23%), Postives = 71/88 (80.68%), Query Frame = -1
Query:  345 ELEGLLVSHPEILDAVVIPFPDAEAGEVPIAYVVRSPNSSLTEEDVQKFIAKQVAPFKRLRRVTFINSVPKSASGKILRRELIAKVRA 608
            ELE LL++HP I DA V+P  D  AGEVP+A+VVR+ +S +TEE +++FI+KQV  +KRL +V FI+++PKSASGKILRREL AK+ A
Sbjct:  481 ELESLLIAHPSIADAAVVPQKDDVAGEVPVAFVVRAADSDITEESIKEFISKQVVFYKRLHKVHFIHAIPKSASGKILRRELRAKLAA 568          
BLAST of CX069907 vs. ExPASy Swiss-Prot
Match: 4CL2_SOYBN (4-coumarate--CoA ligase 2 OS=Glycine max PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 4.312e-23
Identity = 54/86 (62.79%), Postives = 68/86 (79.07%), Query Frame = -1
Query:  351 ELEGLLVSHPEILDAVVIPFPDAEAGEVPIAYVVRSPNSSLTEEDVQKFIAKQVAPFKRLRRVTFINSVPKSASGKILRRELIAKV 608
            ELEGLLVSHP I DA V+P  D  AGEVP+A+VVRS    LTEE V++FIAKQV  +KRL +V F++++PKS SGKILR++L AK+
Sbjct:  469 ELEGLLVSHPSIADAAVVPQKDVAAGEVPVAFVVRSNGFDLTEEAVKEFIAKQVVFYKRLHKVYFVHAIPKSPSGKILRKDLRAKL 554          
BLAST of CX069907 vs. ExPASy Swiss-Prot
Match: 4CL2_TOBAC (4-coumarate--CoA ligase 2 OS=Nicotiana tabacum GN=4CL2 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.356e-23
Identity = 50/88 (56.82%), Postives = 72/88 (81.82%), Query Frame = -1
Query:  345 ELEGLLVSHPEILDAVVIPFPDAEAGEVPIAYVVRSPNSSLTEEDVQKFIAKQVAPFKRLRRVTFINSVPKSASGKILRRELIAKVRA 608
            ELE LL++HP I DA V+P  D +AGEVP+A+VVRS  S++TE++V+ FI+KQV  +KR++RV F++++PKS SGKILR++L AK+ A
Sbjct:  451 ELEALLLNHPNISDAAVVPMKDEQAGEVPVAFVVRSNGSTITEDEVKDFISKQVIFYKRIKRVFFVDAIPKSPSGKILRKDLRAKLAA 538          
BLAST of CX069907 vs. ExPASy Swiss-Prot
Match: 4CL2_SOLTU (4-coumarate--CoA ligase 2 OS=Solanum tuberosum GN=4CL2 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.607e-23
Identity = 50/88 (56.82%), Postives = 72/88 (81.82%), Query Frame = -1
Query:  345 ELEGLLVSHPEILDAVVIPFPDAEAGEVPIAYVVRSPNSSLTEEDVQKFIAKQVAPFKRLRRVTFINSVPKSASGKILRRELIAKVRA 608
            ELE LL++HP+I DA V+P  D +AGEVP+A+VVRS  S++TE++V+ FI+KQV  +KR++RV F+ +VPKS SGKILR++L A++ A
Sbjct:  454 ELEALLINHPDISDAAVVPMIDEQAGEVPVAFVVRSNGSTITEDEVKDFISKQVIFYKRIKRVFFVETVPKSPSGKILRKDLRARLAA 541          
BLAST of CX069907 vs. ExPASy Swiss-Prot
Match: 4CL1_SOLTU (4-coumarate--CoA ligase 1 OS=Solanum tuberosum GN=4CL1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.607e-23
Identity = 50/88 (56.82%), Postives = 72/88 (81.82%), Query Frame = -1
Query:  345 ELEGLLVSHPEILDAVVIPFPDAEAGEVPIAYVVRSPNSSLTEEDVQKFIAKQVAPFKRLRRVTFINSVPKSASGKILRRELIAKVRA 608
            ELE LL++HP+I DA V+P  D +AGEVP+A+VVRS  S++TE++V+ FI+KQV  +KR++RV F+ +VPKS SGKILR++L A++ A
Sbjct:  454 ELEALLINHPDISDAAVVPMIDEQAGEVPVAFVVRSNGSTITEDEVKDFISKQVIFYKRIKRVFFVETVPKSPSGKILRKDLRARLAA 541          
BLAST of CX069907 vs. ExPASy Swiss-Prot
Match: 4CL1_TOBAC (4-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=4CL1 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.651e-22
Identity = 49/88 (55.68%), Postives = 71/88 (80.68%), Query Frame = -1
Query:  345 ELEGLLVSHPEILDAVVIPFPDAEAGEVPIAYVVRSPNSSLTEEDVQKFIAKQVAPFKRLRRVTFINSVPKSASGKILRRELIAKVRA 608
            E+E LL++HP I DA V+P  D +AGEVP+A+VVRS  S++TE++V+ FI+KQV  +KR++RV F+ +VPKS SGKILR++L A++ A
Sbjct:  456 EIEALLLNHPNISDAAVVPMKDEQAGEVPVAFVVRSNGSAITEDEVKDFISKQVIFYKRVKRVFFVETVPKSPSGKILRKDLRARLAA 543          
BLAST of CX069907 vs. ExPASy Swiss-Prot
Match: 4CLL7_ORYSJ (4-coumarate--CoA ligase-like 7 OS=Oryza sativa subsp. japonica GN=4CLL7 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.768e-22
Identity = 49/87 (56.32%), Postives = 69/87 (79.31%), Query Frame = -1
Query:  348 ELEGLLVSHPEILDAVVIPFPDAEAGEVPIAYVVRSPNSSLTEEDVQKFIAKQVAPFKRLRRVTFINSVPKSASGKILRRELIAKVR 608
            ELE +L S P+I+DA V+P+P  EAG++P+A VV+ P S LTE +V   +AKQVAP+K++R+V F++S+PKS SGKILRREL+  +R
Sbjct:  465 ELELVLHSLPQIVDAAVMPYPHEEAGQIPVALVVKQPGSKLTEAEVMYNVAKQVAPYKKIRKVLFVDSIPKSPSGKILRRELVNHLR 551          
BLAST of CX069907 vs. ExPASy Swiss-Prot
Match: 4CL3_ARATH (4-coumarate--CoA ligase 3 OS=Arabidopsis thaliana GN=4CL3 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.036e-21
Identity = 49/86 (56.98%), Postives = 67/86 (77.91%), Query Frame = -1
Query:  351 ELEGLLVSHPEILDAVVIPFPDAEAGEVPIAYVVRSPNSSLTEEDVQKFIAKQVAPFKRLRRVTFINSVPKSASGKILRRELIAKV 608
            ELE LL++H  I DA V+P  D  AGEVP+A+VVRS  + +TEEDV++++AKQV  +KRL +V F+ S+PKS SGKILR++L AK+
Sbjct:  475 ELESLLINHHSIADAAVVPQNDEVAGEVPVAFVVRSNGNDITEEDVKEYVAKQVVFYKRLHKVFFVASIPKSPSGKILRKDLKAKL 560          
BLAST of CX069907 vs. ExPASy Swiss-Prot
Match: 4CL4_ORYSJ (Probable 4-coumarate--CoA ligase 4 OS=Oryza sativa subsp. japonica GN=4CL4 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.992e-21
Identity = 46/88 (52.27%), Postives = 69/88 (78.41%), Query Frame = -1
Query:  345 ELEGLLVSHPEILDAVVIPFPDAEAGEVPIAYVVRSPNSSLTEEDVQKFIAKQVAPFKRLRRVTFINSVPKSASGKILRRELIAKVRA 608
            ELE LL++HP+I DA V+P  D  AGEVP+A++VR   S+++E ++++F+AK+V  +KRL +V F +S+PKS SGKILR++L AK+ A
Sbjct:  460 ELEALLITHPDIKDAAVVPMIDEIAGEVPVAFIVRIEGSAISENEIKQFVAKEVVFYKRLNKVFFADSIPKSPSGKILRKDLRAKLAA 547          
The following BLAST results are available for this feature:
BLAST of CX069907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
4CLL9_ARATH1.482e-2357.324-coumarate--CoA ligase-like 9 OS=Arabidopsis thal... [more]
4CL2_ORYSJ1.936e-2360.23Probable 4-coumarate--CoA ligase 2 OS=Oryza sativa... [more]
4CL2_SOYBN4.312e-2362.794-coumarate--CoA ligase 2 OS=Glycine max PE=2 SV=2[more]
4CL2_TOBAC7.356e-2356.824-coumarate--CoA ligase 2 OS=Nicotiana tabacum GN=... [more]
4CL2_SOLTU9.607e-2356.824-coumarate--CoA ligase 2 OS=Solanum tuberosum GN=... [more]
4CL1_SOLTU9.607e-2356.824-coumarate--CoA ligase 1 OS=Solanum tuberosum GN=... [more]
4CL1_TOBAC3.651e-2255.684-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=... [more]
4CLL7_ORYSJ4.768e-2256.324-coumarate--CoA ligase-like 7 OS=Oryza sativa sub... [more]
4CL3_ARATH4.036e-2156.984-coumarate--CoA ligase 3 OS=Arabidopsis thaliana ... [more]
4CL4_ORYSJ8.992e-2152.27Probable 4-coumarate--CoA ligase 4 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13F02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13F02-K3-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069907 ID=CX069907; Name=CX069907; organism=Citrus sinensis; type=EST; length=608bp
CTTAGATTGAACTTGCAGTAGGTTCTTTTTAACTATCTTCAGTAATGGAA
AGTAATAAATAATTCTTCAAAAAAACAAAAAAAGGAGCGTGTTGGCTAAA
ATAAATAGTGCTCTCATCAAATGCTTCCAATTAGCATTTCAATAAAACCA
AACTTTCTGAGCATTATCCCAATATAATCATCCTAAGTGCTGATATGGGA
ACCATTTATTAGATGATTAATTCTATAAGTTGTAGAATTTCCTATTTATC
CACTCTACCATACCATGAATGAATTTTCACCTCACTCGGAATTATAATAG
TTGGGATACTAGTTGAAAAGTGTAGCATTACTCTTTCACATTTTGGCTCG
TACTTTTGCTATGAGCTCTCTTCTAAGGATTTTCCCAGAAGCTGACTTGG
GAACGCTGTTTATGAATGTCACCCTTCTTAATCTTTTAAAAGGTGCAACC
TGTTTAGCAATAAACTTCTGAACATCTTCTTCAGTCAGTGAACTGTTGGG
TGATCGAACAACATATGCTATTGGGACCTCCCCAGCTTCAGCGTCAGGAA
ATGGAATAACAACAGCATCTAATATCTCAGGGTGAGAAACAAGCAGCCCC
TCAAGCTC
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