CX069907

Overview
NameCX069907
Unique NameCX069907
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069907 vs. ExPASy Swiss-Prot
Match: 4CL3_ORYSJ (Probable 4-coumarate--CoA ligase 3 OS=Oryza sativa subsp. japonica GN=4CL3 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.992e-21
Identity = 45/88 (51.14%), Postives = 69/88 (78.41%), Query Frame = -1
Query:  345 ELEGLLVSHPEILDAVVIPFPDAEAGEVPIAYVVRSPNSSLTEEDVQKFIAKQVAPFKRLRRVTFINSVPKSASGKILRRELIAKVRA 608
            ELE LL++HPEI DA V+   D  AGEVP+A++VR+  S +TE++++KF+AK+V  +KR+ +V F +S+PK+ SGKILR++L A++ A
Sbjct:  450 ELEALLITHPEIKDAAVVSMKDDLAGEVPVAFIVRTEGSEITEDEIKKFVAKEVVFYKRINKVFFTDSIPKNPSGKILRKDLRARLAA 537          
BLAST of CX069907 vs. ExPASy Swiss-Prot
Match: 4CL2_PETCR (4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL2 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.992e-21
Identity = 46/86 (53.49%), Postives = 69/86 (80.23%), Query Frame = -1
Query:  351 ELEGLLVSHPEILDAVVIPFPDAEAGEVPIAYVVRSPNSSLTEEDVQKFIAKQVAPFKRLRRVTFINSVPKSASGKILRRELIAKV 608
            ELE LL++HP I DA V+P  D +AGEVP+A+VVR+   + TEE++++F++KQV  +KR+ RV F++++PKS SGKILR++L AK+
Sbjct:  452 ELEALLLTHPTISDAAVVPMIDEKAGEVPVAFVVRTNGFTTTEEEIKQFVSKQVVFYKRIFRVFFVDAIPKSPSGKILRKDLRAKI 537          
BLAST of CX069907 vs. ExPASy Swiss-Prot
Match: 4CLL6_ARATH (4-coumarate--CoA ligase-like 6 OS=Arabidopsis thaliana GN=4CLL6 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.534e-20
Identity = 44/82 (53.66%), Postives = 65/82 (79.27%), Query Frame = -1
Query:  363 ELEGLLVSHPEILDAVVIPFPDAEAGEVPIAYVVRSPNSSLTEEDVQKFIAKQVAPFKRLRRVTFINSVPKSASGKILRREL 608
            +LE +LVSHP I+DA V   P+ E GE+P+A+VVR   ++L+EEDV  ++A QVAP++++R+V  +NS+PKS +GKILR+EL
Sbjct:  473 DLEAVLVSHPLIIDAAVTAAPNEECGEIPVAFVVRRQETTLSEEDVISYVASQVAPYRKVRKVVMVNSIPKSPTGKILRKEL 554          
BLAST of CX069907 vs. ExPASy Swiss-Prot
Match: 4CL1_PETCR (4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.003e-20
Identity = 45/86 (52.33%), Postives = 69/86 (80.23%), Query Frame = -1
Query:  351 ELEGLLVSHPEILDAVVIPFPDAEAGEVPIAYVVRSPNSSLTEEDVQKFIAKQVAPFKRLRRVTFINSVPKSASGKILRRELIAKV 608
            ELE LL++HP I DA V+P  D +AGEVP+A+VVR+   + TEE++++F++KQV  +KR+ RV F++++PKS SGKILR++L A++
Sbjct:  452 ELEALLLTHPTISDAAVVPMIDEKAGEVPVAFVVRTNGFTTTEEEIKQFVSKQVVFYKRIFRVFFVDAIPKSPSGKILRKDLRARI 537          
BLAST of CX069907 vs. ExPASy Swiss-Prot
Match: 4CL_VANPL (4-coumarate--CoA ligase OS=Vanilla planifolia GN=4CL PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.417e-20
Identity = 45/88 (51.14%), Postives = 69/88 (78.41%), Query Frame = -1
Query:  345 ELEGLLVSHPEILDAVVIPFPDAEAGEVPIAYVVRSPNSSLTEEDVQKFIAKQVAPFKRLRRVTFINSVPKSASGKILRRELIAKVRA 608
            ELE LL++HP I DA V+P  D  AGEVP+A+VV+S   ++TE+++++FI+KQV  +KR+ RV F+ ++PK+ SGKILR++L A++ A
Sbjct:  460 ELEALLLTHPCISDAAVVPMKDEAAGEVPVAFVVKSNGHNITEDEIKQFISKQVIFYKRINRVFFVEAIPKAPSGKILRKDLRARLAA 547          
BLAST of CX069907 vs. ExPASy Swiss-Prot
Match: 4CLL8_ORYSJ (Putative 4-coumarate--CoA ligase-like 8 OS=Oryza sativa subsp. japonica GN=4CLL8 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.417e-20
Identity = 45/83 (54.22%), Postives = 65/83 (78.31%), Query Frame = -1
Query:  363 ELEGLLVSHPEILDAVVIPFPDAEAGEVPIAYVVRSPNSS-LTEEDVQKFIAKQVAPFKRLRRVTFINSVPKSASGKILRREL 608
            ELE +L +HP+I DA V P+PD EAGE+P+AYVV+   S  L E++V  F+  +VAP+K++R+V F++S+P+S SGKILRR+L
Sbjct:  513 ELEDVLATHPDIHDAAVAPYPDKEAGEIPMAYVVKKQGSGHLQEDEVISFVQNKVAPYKKIRKVVFVDSIPRSPSGKILRRQL 595          
BLAST of CX069907 vs. ExPASy Swiss-Prot
Match: 4CL1_SOYBN (4-coumarate--CoA ligase 1 (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.463e-20
Identity = 49/93 (52.69%), Postives = 71/93 (76.34%), Query Frame = -1
Query:  333 ELEGLLVSHPEILDAVVIPFPDAEAGEVPIAYVVRSPN-SSLTEEDVQKFIAKQVAPFKRLRRVTFINSVPKSASGKILRRELIAKVRAKM*K 608
            ELE LL++HP+I DA V+P  D  AGEVP+A+VV S   +  TE+++++FI+KQV  +KR+ RV FI+++PKS SGKILR++L AK+ A + K
Sbjct:  201 ELEALLLTHPKISDAAVVPMKDEAAGEVPVAFVVISNGYTDTTEDEIKQFISKQVVFYKRINRVFFIDAIPKSPSGKILRKDLRAKIAASVPK 293          
BLAST of CX069907 vs. ExPASy Swiss-Prot
Match: 4CL_PINTA (4-coumarate--CoA ligase OS=Pinus taeda GN=4CL PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.828e-20
Identity = 46/89 (51.69%), Postives = 71/89 (79.78%), Query Frame = -1
Query:  342 ELEGLLVSHPEILDAVVIPFPDAEAGEVPIAYVVRSPNSSLTEEDVQKFIAKQVAPFKRLRRVTFINSVPKSASGKILRRELIAKVRAK 608
            ELE LLV+HP I DA V+P    EAGEVP+A+VV+S  S ++E+++++F+AKQV  +K++ RV F++++PKS SGKILR++L +++ AK
Sbjct:  451 ELEALLVAHPSIADAAVVPQKHEEAGEVPVAFVVKS--SEISEQEIKEFVAKQVIFYKKIHRVYFVDAIPKSPSGKILRKDLRSRLAAK 537          
BLAST of CX069907 vs. ExPASy Swiss-Prot
Match: 4CL1_ARATH (4-coumarate--CoA ligase 1 OS=Arabidopsis thaliana GN=4CL1 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.612e-20
Identity = 44/86 (51.16%), Postives = 66/86 (76.74%), Query Frame = -1
Query:  351 ELEGLLVSHPEILDAVVIPFPDAEAGEVPIAYVVRSPNSSLTEEDVQKFIAKQVAPFKRLRRVTFINSVPKSASGKILRRELIAKV 608
            ELE LL+ HP+I D  V+   +  AGEVP+A+VV+S +S L+E+DV++F++KQV  +KR+ +V F  S+PK+ SGKILR++L AK+
Sbjct:  472 ELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKL 557          
BLAST of CX069907 vs. ExPASy Swiss-Prot
Match: 4CL2_ARATH (4-coumarate--CoA ligase 2 OS=Arabidopsis thaliana GN=4CL2 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 9.941e-20
Identity = 42/86 (48.84%), Postives = 69/86 (80.23%), Query Frame = -1
Query:  351 ELEGLLVSHPEILDAVVIPFPDAEAGEVPIAYVVRSPNSSLTEEDVQKFIAKQVAPFKRLRRVTFINSVPKSASGKILRRELIAKV 608
            ELE LL+ HPEI D  V+   + +AGEVP+A+VVRS +S+++E+++++F++KQV  +KR+ +V F +S+PK+ SGKILR++L A++
Sbjct:  465 ELESLLIGHPEINDVAVVAMKEEDAGEVPVAFVVRSKDSNISEDEIKQFVSKQVVFYKRINKVFFTDSIPKAPSGKILRKDLRARL 550          
The following BLAST results are available for this feature:
BLAST of CX069907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
4CL3_ORYSJ8.992e-2151.14Probable 4-coumarate--CoA ligase 3 OS=Oryza sativa... [more]
4CL2_PETCR8.992e-2153.494-coumarate--CoA ligase 1 OS=Petroselinum crispum ... [more]
4CLL6_ARATH1.534e-2053.664-coumarate--CoA ligase-like 6 OS=Arabidopsis thal... [more]
4CL1_PETCR2.003e-2052.334-coumarate--CoA ligase 1 OS=Petroselinum crispum ... [more]
4CL_VANPL3.417e-2051.144-coumarate--CoA ligase OS=Vanilla planifolia GN=4... [more]
4CLL8_ORYSJ3.417e-2054.22Putative 4-coumarate--CoA ligase-like 8 OS=Oryza s... [more]
4CL1_SOYBN4.463e-2052.694-coumarate--CoA ligase 1 (Fragment) OS=Glycine ma... [more]
4CL_PINTA5.828e-2051.694-coumarate--CoA ligase OS=Pinus taeda GN=4CL PE=2... [more]
4CL1_ARATH7.612e-2051.164-coumarate--CoA ligase 1 OS=Arabidopsis thaliana ... [more]
4CL2_ARATH9.941e-2048.844-coumarate--CoA ligase 2 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13F02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13F02-K3-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069907 ID=CX069907; Name=CX069907; organism=Citrus sinensis; type=EST; length=608bp
CTTAGATTGAACTTGCAGTAGGTTCTTTTTAACTATCTTCAGTAATGGAA
AGTAATAAATAATTCTTCAAAAAAACAAAAAAAGGAGCGTGTTGGCTAAA
ATAAATAGTGCTCTCATCAAATGCTTCCAATTAGCATTTCAATAAAACCA
AACTTTCTGAGCATTATCCCAATATAATCATCCTAAGTGCTGATATGGGA
ACCATTTATTAGATGATTAATTCTATAAGTTGTAGAATTTCCTATTTATC
CACTCTACCATACCATGAATGAATTTTCACCTCACTCGGAATTATAATAG
TTGGGATACTAGTTGAAAAGTGTAGCATTACTCTTTCACATTTTGGCTCG
TACTTTTGCTATGAGCTCTCTTCTAAGGATTTTCCCAGAAGCTGACTTGG
GAACGCTGTTTATGAATGTCACCCTTCTTAATCTTTTAAAAGGTGCAACC
TGTTTAGCAATAAACTTCTGAACATCTTCTTCAGTCAGTGAACTGTTGGG
TGATCGAACAACATATGCTATTGGGACCTCCCCAGCTTCAGCGTCAGGAA
ATGGAATAACAACAGCATCTAATATCTCAGGGTGAGAAACAAGCAGCCCC
TCAAGCTC
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