CX069907

Overview
NameCX069907
Unique NameCX069907
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069907 vs. ExPASy Swiss-Prot
Match: 4CL3_DICDI (Probable 4-coumarate--CoA ligase 3 OS=Dictyostelium discoideum GN=4cl3 PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.473e-12
Identity = 36/83 (43.37%), Postives = 55/83 (66.27%), Query Frame = -1
Query:  363 ELEGLLVSHPEILDAVVIPFPDAEAGEVPIAYVVRSPNSSLTEEDVQKFIAKQVAPFKRLR-RVTFINSVPKSASGKILRREL 608
            ELE LL+SHP++ DA V+     + GEVP  +VV   N SLTE+++  +   ++A +K  R  + FI ++PKSA+GK+LR+ L
Sbjct:  461 ELEALLLSHPKVADACVVGLSKGDMGEVPRGFVVIKQNESLTEKELLDWAHPKIANYKHFRGGIFFIPAIPKSATGKLLRKNL 543          
BLAST of CX069907 vs. ExPASy Swiss-Prot
Match: 4CL2_DICDI (Probable 4-coumarate--CoA ligase 2 OS=Dictyostelium discoideum GN=4cl2 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.473e-12
Identity = 36/83 (43.37%), Postives = 55/83 (66.27%), Query Frame = -1
Query:  363 ELEGLLVSHPEILDAVVIPFPDAEAGEVPIAYVVRSPNSSLTEEDVQKFIAKQVAPFKRLR-RVTFINSVPKSASGKILRREL 608
            ELE LL+SHP++ DA V+     + GEVP  +VV   N SLTE+++  +   ++A +K  R  + FI ++PKSA+GK+LR+ L
Sbjct:  461 ELEALLLSHPKVADACVVGLSKGDMGEVPRGFVVIKQNESLTEKELLDWAHPKIANYKHFRGGIFFIPAIPKSATGKLLRKNL 543          
BLAST of CX069907 vs. ExPASy Swiss-Prot
Match: 4CL1_DICDI (Probable 4-coumarate--CoA ligase 1 OS=Dictyostelium discoideum GN=4cl1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.473e-12
Identity = 36/83 (43.37%), Postives = 55/83 (66.27%), Query Frame = -1
Query:  363 ELEGLLVSHPEILDAVVIPFPDAEAGEVPIAYVVRSPNSSLTEEDVQKFIAKQVAPFKRLR-RVTFINSVPKSASGKILRREL 608
            ELE LL+SHP++ DA V+     + GEVP  +VV   N SLTE+++  +   ++A +K  R  + FI ++PKSA+GK+LR+ L
Sbjct:  461 ELEALLLSHPKVADACVVGLSKGDMGEVPRGFVVIKQNESLTEKELLDWAHPKIANYKHFRGGIFFIPAIPKSATGKLLRKNL 543          
BLAST of CX069907 vs. ExPASy Swiss-Prot
Match: MENE_LACLA (2-succinylbenzoate--CoA ligase OS=Lactococcus lactis subsp. lactis GN=menE PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.842e-12
Identity = 33/82 (40.24%), Postives = 60/82 (73.17%), Query Frame = -1
Query:  363 ELEGLLVSHPEILDAVVIPFPDAEAGEVPIAYVVRSPNSSLTEEDVQKFIAKQVAPFKRLRRVTFINSVPKSASGKILRREL 608
            E+E L+ S PEI +  ++  PDA+ G+VPI +V    + ++++E ++ F+ +++A +KR + +TF++ +PK+ASGKILR+EL
Sbjct:  372 EIEDLVYSLPEIKECALVAKPDAKWGQVPILFV----SGNISQEKLENFLTEKLAKYKRPQSITFMDELPKNASGKILRKEL 449          
BLAST of CX069907 vs. ExPASy Swiss-Prot
Match: LUCI_PHOPY (Luciferin 4-monooxygenase OS=Photinus pyralis PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.965e-12
Identity = 35/83 (42.17%), Postives = 53/83 (63.86%), Query Frame = -1
Query:  363 ELEGLLVSHPEILDAVVIPFPDAEAGEVPIAYVVRSPNSSLTEEDVQKFIAKQVAPFKRLR-RVTFINSVPKSASGKILRREL 608
            ELE +L+ HP I DA V   PD +AGE+P A VV     ++TE+++  ++A QV   K+LR  V F++ VPK  +GK+  R++
Sbjct:  453 ELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKI 535          
BLAST of CX069907 vs. ExPASy Swiss-Prot
Match: LUCI_PHOPE (Luciferin 4-monooxygenase OS=Photuris pennsylvanica PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.301e-11
Identity = 40/94 (42.55%), Postives = 59/94 (62.77%), Query Frame = -1
Query:  339 ELEGLLVSHPEILDAVVIPFPDAEAGEVPIAYVVRSPNSSLTEEDVQKFIAKQVAPFKRLR-RVTFINSVPKSASGKILR---RELIAKVRAKM 608
            E+EG+L+ HP I+DA V   PD  AGE+P A VV      L E+ VQ F++ QV+  K LR  V F++ +PK ++GKI R   R++  K ++K+
Sbjct:  452 EIEGILLQHPYIVDAGVTGIPDEAAGELPAAGVVVQTGKYLNEQIVQNFVSSQVSTAKWLRGGVKFLDEIPKGSTGKIDRKVLRQMFEKHKSKL 545          
BLAST of CX069907 vs. ExPASy Swiss-Prot
Match: ACSA_PYRAR (Acetyl-coenzyme A synthetase OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=acsA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.899e-11
Identity = 36/87 (41.38%), Postives = 53/87 (60.92%), Query Frame = -1
Query:  357 ELEGLLVSHPEILDAVVIPFPDAEAGEVPIAYVVRSPNSSLTEE---DVQKFIAKQVAPFKRLRRVTFINSVPKSASGKILRRELIA 608
            ELE   V+HP + +A V+  PDA  GEVPIA+VV     + TEE   ++++ I K + P     ++ F+  +PK+ SGKI+RR L A
Sbjct:  548 ELESAFVAHPAVAEAAVVGVPDAIKGEVPIAFVVLKQGVTPTEELRKELREHIRKSIGPIAEPAQIFFVTKLPKTRSGKIMRRLLKA 634          
BLAST of CX069907 vs. ExPASy Swiss-Prot
Match: ACSM3_RAT (Acyl-coenzyme A synthetase ACSM3, mitochondrial OS=Rattus norvegicus GN=Acsm3 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.459e-11
Identity = 33/90 (36.67%), Postives = 54/90 (60.00%), Query Frame = -1
Query:  354 ELEGLLVSHPEILDAVVIPFPDAEAGEVPIAYVVRSPNSSLTEED-----VQKFIAKQVAPFKRLRRVTFINSVPKSASGKILRRELIAK 608
            E+E  L+ HP I ++ V+  PD   GEV  A++V +P+  L +++     +Q+ + K  AP+K  R++ FI  +PK+ SGK+ R EL  K
Sbjct:  486 EVESALIEHPSIAESAVVSSPDPIRGEVVKAFIVLNPDYKLHDQEQLKKEIQEHVKKTTAPYKYPRKIEFIEELPKTVSGKVKRNELRRK 575          
BLAST of CX069907 vs. ExPASy Swiss-Prot
Match: FAT2_YEAST (Peroxisomal-coenzyme A synthetase OS=Saccharomyces cerevisiae GN=FAT2 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.435e-11
Identity = 37/97 (38.14%), Postives = 61/97 (62.89%), Query Frame = -1
Query:  318 ELEGLLVSHPEILDAVVIPFPDAEAGEVPIAYVVRSPNSSLTEEDVQKFIAKQVAPFKRLRRVTFINSVPKSASGKILRRELIAKVRAKM*KSNATL 608
            EL+G+++SHP+I +AV    PD   G+V  A +V      +T E++  F+ K +A FK   +V F++ +PK+A+GKI RR +IA+  AK  ++ + L
Sbjct:  448 ELDGIMLSHPKIDEAVAFGVPDDMYGQVVQAAIVLKKGEKMTYEELVNFLKKHLASFKIPTKVYFVDKLPKTATGKIQRR-VIAETFAKSSRNKSKL 543          
The following BLAST results are available for this feature:
BLAST of CX069907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
4CL3_DICDI4.473e-1243.37Probable 4-coumarate--CoA ligase 3 OS=Dictyosteliu... [more]
4CL2_DICDI4.473e-1243.37Probable 4-coumarate--CoA ligase 2 OS=Dictyosteliu... [more]
4CL1_DICDI4.473e-1243.37Probable 4-coumarate--CoA ligase 1 OS=Dictyosteliu... [more]
MENE_LACLA5.842e-1240.242-succinylbenzoate--CoA ligase OS=Lactococcus lact... [more]
LUCI_PHOPY9.965e-1242.17Luciferin 4-monooxygenase OS=Photinus pyralis PE=1... [more]
LUCI_PHOPE1.301e-1142.55Luciferin 4-monooxygenase OS=Photuris pennsylvanic... [more]
ACSA_PYRAR2.899e-1141.38Acetyl-coenzyme A synthetase OS=Pyrobaculum arsena... [more]
ACSM3_RAT6.459e-1136.67Acyl-coenzyme A synthetase ACSM3, mitochondrial OS... [more]
FAT2_YEAST8.435e-1138.14Peroxisomal-coenzyme A synthetase OS=Saccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13F02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13F02-K3-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069907 ID=CX069907; Name=CX069907; organism=Citrus sinensis; type=EST; length=608bp
CTTAGATTGAACTTGCAGTAGGTTCTTTTTAACTATCTTCAGTAATGGAA
AGTAATAAATAATTCTTCAAAAAAACAAAAAAAGGAGCGTGTTGGCTAAA
ATAAATAGTGCTCTCATCAAATGCTTCCAATTAGCATTTCAATAAAACCA
AACTTTCTGAGCATTATCCCAATATAATCATCCTAAGTGCTGATATGGGA
ACCATTTATTAGATGATTAATTCTATAAGTTGTAGAATTTCCTATTTATC
CACTCTACCATACCATGAATGAATTTTCACCTCACTCGGAATTATAATAG
TTGGGATACTAGTTGAAAAGTGTAGCATTACTCTTTCACATTTTGGCTCG
TACTTTTGCTATGAGCTCTCTTCTAAGGATTTTCCCAGAAGCTGACTTGG
GAACGCTGTTTATGAATGTCACCCTTCTTAATCTTTTAAAAGGTGCAACC
TGTTTAGCAATAAACTTCTGAACATCTTCTTCAGTCAGTGAACTGTTGGG
TGATCGAACAACATATGCTATTGGGACCTCCCCAGCTTCAGCGTCAGGAA
ATGGAATAACAACAGCATCTAATATCTCAGGGTGAGAAACAAGCAGCCCC
TCAAGCTC
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