CX069902

Overview
NameCX069902
Unique NameCX069902
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX069902 vs. ExPASy Swiss-Prot
Match: H3_CHITH (Histone H3 OS=Chironomus thummi thummi PE=3 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 1.213e-58
Identity = 118/136 (86.76%), Postives = 120/136 (88.24%), Query Frame = -2 
Query:  194 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 601
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CX069902 vs. ExPASy Swiss-Prot
Match: H32_XENTR (Histone H3.2 OS=Xenopus tropicalis GN=TGas081o10.1 PE=2 SV=3)

HSP 1 Score: 226.098 bits (575), Expect = 1.213e-58
Identity = 118/136 (86.76%), Postives = 120/136 (88.24%), Query Frame = -2 
Query:  194 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 601
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CX069902 vs. ExPASy Swiss-Prot
Match: H32_XENLA (Histone H3.2 OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 1.213e-58
Identity = 118/136 (86.76%), Postives = 120/136 (88.24%), Query Frame = -2 
Query:  194 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 601
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CX069902 vs. ExPASy Swiss-Prot
Match: H32_PORAF (Histone H3.2 OS=Poroderma africanus PE=1 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 1.213e-58
Identity = 118/136 (86.76%), Postives = 120/136 (88.24%), Query Frame = -2 
Query:  194 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 601
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CX069902 vs. ExPASy Swiss-Prot
Match: H32_ONCMY (Histone H3.2 OS=Oncorhynchus mykiss PE=1 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 1.213e-58
Identity = 118/136 (86.76%), Postives = 120/136 (88.24%), Query Frame = -2 
Query:  194 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 601
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CX069902 vs. ExPASy Swiss-Prot
Match: H32_MUSPA (Histone H3.2 OS=Mus pahari GN=H312 PE=2 SV=3)

HSP 1 Score: 226.098 bits (575), Expect = 1.213e-58
Identity = 118/136 (86.76%), Postives = 120/136 (88.24%), Query Frame = -2 
Query:  194 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 601
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CX069902 vs. ExPASy Swiss-Prot
Match: H32_MOUSE (Histone H3.2 OS=Mus musculus GN=Hist1h3b PE=1 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 1.213e-58
Identity = 118/136 (86.76%), Postives = 120/136 (88.24%), Query Frame = -2 
Query:  194 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 601
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CX069902 vs. ExPASy Swiss-Prot
Match: H32_ICTBU (Histone H3.2 OS=Ictiobus bubalus PE=1 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 1.213e-58
Identity = 118/136 (86.76%), Postives = 120/136 (88.24%), Query Frame = -2 
Query:  194 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 601
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CX069902 vs. ExPASy Swiss-Prot
Match: H32_HUMAN (Histone H3.2 OS=Homo sapiens GN=HIST2H3A PE=1 SV=3)

HSP 1 Score: 226.098 bits (575), Expect = 1.213e-58
Identity = 118/136 (86.76%), Postives = 120/136 (88.24%), Query Frame = -2 
Query:  194 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 601
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CX069902 vs. ExPASy Swiss-Prot
Match: H32_DANRE (Histone H3.2 OS=Danio rerio GN=zgc:113984 PE=2 SV=3)

HSP 1 Score: 226.098 bits (575), Expect = 1.213e-58
Identity = 118/136 (86.76%), Postives = 120/136 (88.24%), Query Frame = -2 
Query:  194 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 601
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
The following BLAST results are available for this feature:
BLAST of CX069902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H3_CHITH1.213e-5886.76Histone H3 OS=Chironomus thummi thummi PE=3 SV=2[more]
H32_XENTR1.213e-5886.76Histone H3.2 OS=Xenopus tropicalis GN=TGas081o10.1... [more]
H32_XENLA1.213e-5886.76Histone H3.2 OS=Xenopus laevis PE=1 SV=2[more]
H32_PORAF1.213e-5886.76Histone H3.2 OS=Poroderma africanus PE=1 SV=2[more]
H32_ONCMY1.213e-5886.76Histone H3.2 OS=Oncorhynchus mykiss PE=1 SV=2[more]
H32_MUSPA1.213e-5886.76Histone H3.2 OS=Mus pahari GN=H312 PE=2 SV=3[more]
H32_MOUSE1.213e-5886.76Histone H3.2 OS=Mus musculus GN=Hist1h3b PE=1 SV=2[more]
H32_ICTBU1.213e-5886.76Histone H3.2 OS=Ictiobus bubalus PE=1 SV=2[more]
H32_HUMAN1.213e-5886.76Histone H3.2 OS=Homo sapiens GN=HIST2H3A PE=1 SV=3[more]
H32_DANRE1.213e-5886.76Histone H3.2 OS=Danio rerio GN=zgc:113984 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13E11_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13E11-I21-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069902 ID=CX069902; Name=CX069902; organism=Citrus sinensis; type=EST; length=644bp
TTTTTTTTTAAAAGGCTAATTATCTATTAGATTAAAAACCCTCGAAAACA
TTTTAACAAACACCTTAGATACATACTAGACCCGATCTAATCCATCGGAT
AGACATCCAAACATTCATCTAAACCCCAAATATTGACCGAAAGACTAACA
TCGCAGTAAGAGGAACAAAATAAATTAAATCAGAAAGTTCCTAAGCCCTT
TCACCCCTGATCCGCCTAGCAAGCTGAATGTCCTTGGGCATAATAGTGAC
CCTCTTAGCATGAATAGCGCAGAGGTTGGTGTCCTCGAACAGCCCAACAA
GATAAGCCTCAGCAGCCTCCTGAAGTGCAGCAACAGCGCTGCTCTGGAAC
CTCAGATCCGTCTTGAAATCCTGAGCGATTTCCCTCACCAATCTCTGGAA
CGGAAGCTTCCTAATAAGAAGCTCAGTGCTCTTCTGGTACTTCCTGATTT
CACGGAGTGCGACAGTTCCTGGACGGAACCTGTGAGGCTTCTTCACTCCT
CCGGTTGCCGGTGCGGATTTCCTTGCCGCCTTGGTCGCCAGTTGCTTTCT
TGGGGCCTTGCCTCCGGTGGACTTGCGAGCGGTTTGCTTCGTGCGGGCCA
TTGATTTGGGAAATTAAGTGTTTCTTTTTTCTTGGGAGATCTTA
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