CX069902

Overview
NameCX069902
Unique NameCX069902
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX069902 vs. ExPASy Swiss-Prot
Match: H3_CAEEL (Histone H3 OS=Caenorhabditis elegans GN=his-2 PE=1 SV=4)

HSP 1 Score: 221.476 bits (563), Expect = 2.987e-57
Identity = 115/136 (84.56%), Postives = 119/136 (87.50%), Query Frame = -2 
Query:  194 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 601
            MARTKQTARKSTGGKAPRKQLATKAARKSAPA+GGVKKPHR+RPGTVALREIR+YQKSTELLIR+ PFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPASGGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CX069902 vs. ExPASy Swiss-Prot
Match: H33A_LILLO (Histone H3.3a OS=Lilium longiflorum GN=MPH3 PE=2 SV=3)

HSP 1 Score: 221.476 bits (563), Expect = 2.987e-57
Identity = 115/136 (84.56%), Postives = 118/136 (86.76%), Query Frame = -2 
Query:  194 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 601
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKST+LLIRKLPFQRLVREIAQD+K DLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTDLLIRKLPFQRLVREIAQDYKADLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CX069902 vs. ExPASy Swiss-Prot
Match: H3_GRIJA (Histone H3 OS=Griffithsia japonica PE=2 SV=3)

HSP 1 Score: 220.705 bits (561), Expect = 5.095e-57
Identity = 114/135 (84.44%), Postives = 119/135 (88.15%), Query Frame = -2 
Query:  197 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 601
            MARTKQTARKSTGGKAPRKQLATKAARKSAPA+GGVKKPHRFRPGTVALREIR++QKSTELL+RKLPFQRLVREIAQDFK+DLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPASGGVKKPHRFRPGTVALREIRRFQKSTELLVRKLPFQRLVREIAQDFKSDLRFQSSAVLALQEAAEAYMVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135
[Close]
BLAST of CX069902 vs. ExPASy Swiss-Prot
Match: H3_VOLCA (Histone H3 OS=Volvox carteri GN=H3-I PE=3 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 8.691e-57
Identity = 117/136 (86.03%), Postives = 119/136 (87.50%), Query Frame = -2 
Query:  194 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 601
            MARTKQTARKSTGGKAPRKQLATKAARK+ PATGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKT-PATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSQAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135
[Close]
BLAST of CX069902 vs. ExPASy Swiss-Prot
Match: H32_CHLRE (Histone H3 type 2 OS=Chlamydomonas reinhardtii GN=ch3-II PE=1 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 8.691e-57
Identity = 117/136 (86.03%), Postives = 119/136 (87.50%), Query Frame = -2 
Query:  194 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 601
            MARTKQTARKSTGGKAPRKQLATKAARK+ PATGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKT-PATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSQAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135
[Close]
BLAST of CX069902 vs. ExPASy Swiss-Prot
Match: H3L_XENLA (Histone H3-like OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 219.164 bits (557), Expect = 1.483e-56
Identity = 114/136 (83.82%), Postives = 117/136 (86.03%), Query Frame = -2 
Query:  194 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 601
            MARTKQTARKSTGGKAPRKQL TKAA+K APATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                V LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLVTKAAKKCAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQRSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CX069902 vs. ExPASy Swiss-Prot
Match: H31_CHLRE (Histone H3 type 1 OS=Chlamydomonas reinhardtii GN=ch3-I PE=1 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.936e-56
Identity = 116/136 (85.29%), Postives = 119/136 (87.50%), Query Frame = -2 
Query:  194 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 601
            MARTKQTARKSTGGKAPRKQLATKAARK+ PATGGVKKPHR+RPGTVALREIRKYQKSTEL+IRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKT-PATGGVKKPHRYRPGTVALREIRKYQKSTELVIRKLPFQRLVREIAQDFKTDLRFQSQAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135
[Close]
BLAST of CX069902 vs. ExPASy Swiss-Prot
Match: H3L5_ARATH (Putative histone H3-like 5 OS=Arabidopsis thaliana GN=At5g65350 PE=5 SV=3)

HSP 1 Score: 218.009 bits (554), Expect = 3.303e-56
Identity = 114/136 (83.82%), Postives = 118/136 (86.76%), Query Frame = -2 
Query:  194 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 601
            MARTKQTAR STGGKAPRKQLA KAAR+SAPATGGVKKPHRFRPGTVALR+IRKYQKSTE+LIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPK+IQLARRIRGERA
Sbjct:    1 MARTKQTARISTGGKAPRKQLAPKAARQSAPATGGVKKPHRFRPGTVALRDIRKYQKSTEILIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKEIQLARRIRGERA 136
[Close]
BLAST of CX069902 vs. ExPASy Swiss-Prot
Match: H3L3_ARATH (Histone H3-like 3 OS=Arabidopsis thaliana GN=At1g75600 PE=2 SV=3)

HSP 1 Score: 216.468 bits (550), Expect = 9.609e-56
Identity = 113/136 (83.09%), Postives = 116/136 (85.29%), Query Frame = -2 
Query:  194 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 601
            MARTKQTARKS GGKAPR  LATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQD+KTDLRF                VGLFEDTNLCAIHAKRVTIMPKD+QLARRIRGERA
Sbjct:    1 MARTKQTARKSHGGKAPRTLLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDYKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRGERA 136
[Close]
BLAST of CX069902 vs. ExPASy Swiss-Prot
Match: H33_CHLRE (Histone H3 type 3 OS=Chlamydomonas reinhardtii GN=ch3-IV PE=1 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 1.255e-55
Identity = 116/136 (85.29%), Postives = 118/136 (86.76%), Query Frame = -2 
Query:  194 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 601
            MARTKQTARKSTGGKAPRKQLATKAARK+ PATGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAI AKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKT-PATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSQAVVALQEAAEAYLVGLFEDTNLCAITAKRVTIMPKDIQLARRIRGERA 135
The following BLAST results are available for this feature:
BLAST of CX069902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H3_CAEEL2.987e-5784.56Histone H3 OS=Caenorhabditis elegans GN=his-2 PE=1... [more]
H33A_LILLO2.987e-5784.56Histone H3.3a OS=Lilium longiflorum GN=MPH3 PE=2 S... [more]
H3_GRIJA5.095e-5784.44Histone H3 OS=Griffithsia japonica PE=2 SV=3[more]
H3_VOLCA8.691e-5786.03Histone H3 OS=Volvox carteri GN=H3-I PE=3 SV=2[more]
H32_CHLRE8.691e-5786.03Histone H3 type 2 OS=Chlamydomonas reinhardtii GN=... [more]
H3L_XENLA1.483e-5683.82Histone H3-like OS=Xenopus laevis PE=1 SV=2[more]
H31_CHLRE1.936e-5685.29Histone H3 type 1 OS=Chlamydomonas reinhardtii GN=... [more]
H3L5_ARATH3.303e-5683.82Putative histone H3-like 5 OS=Arabidopsis thaliana... [more]
H3L3_ARATH9.609e-5683.09Histone H3-like 3 OS=Arabidopsis thaliana GN=At1g7... [more]
H33_CHLRE1.255e-5585.29Histone H3 type 3 OS=Chlamydomonas reinhardtii GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13E11_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13E11-I21-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069902 ID=CX069902; Name=CX069902; organism=Citrus sinensis; type=EST; length=644bp
TTTTTTTTTAAAAGGCTAATTATCTATTAGATTAAAAACCCTCGAAAACA
TTTTAACAAACACCTTAGATACATACTAGACCCGATCTAATCCATCGGAT
AGACATCCAAACATTCATCTAAACCCCAAATATTGACCGAAAGACTAACA
TCGCAGTAAGAGGAACAAAATAAATTAAATCAGAAAGTTCCTAAGCCCTT
TCACCCCTGATCCGCCTAGCAAGCTGAATGTCCTTGGGCATAATAGTGAC
CCTCTTAGCATGAATAGCGCAGAGGTTGGTGTCCTCGAACAGCCCAACAA
GATAAGCCTCAGCAGCCTCCTGAAGTGCAGCAACAGCGCTGCTCTGGAAC
CTCAGATCCGTCTTGAAATCCTGAGCGATTTCCCTCACCAATCTCTGGAA
CGGAAGCTTCCTAATAAGAAGCTCAGTGCTCTTCTGGTACTTCCTGATTT
CACGGAGTGCGACAGTTCCTGGACGGAACCTGTGAGGCTTCTTCACTCCT
CCGGTTGCCGGTGCGGATTTCCTTGCCGCCTTGGTCGCCAGTTGCTTTCT
TGGGGCCTTGCCTCCGGTGGACTTGCGAGCGGTTTGCTTCGTGCGGGCCA
TTGATTTGGGAAATTAAGTGTTTCTTTTTTCTTGGGAGATCTTA
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