CX069902

Overview
NameCX069902
Unique NameCX069902
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069902 vs. ExPASy Swiss-Prot
Match: H3L1_ARATH (Histone H3-like 1 OS=Arabidopsis thaliana GN=At1g13370 PE=2 SV=3)

HSP 1 Score: 214.927 bits (546), Expect = 2.796e-55
Identity = 113/136 (83.09%), Postives = 115/136 (84.56%), Query Frame = -2
Query:  194 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 601
            MARTKQ+ARKS GGKAP KQLATKAARKSAP TGGVKKPHRFRPGTVALREIRKYQKSTELL RKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKD+QLARRIR ERA
Sbjct:    1 MARTKQSARKSHGGKAPTKQLATKAARKSAPTTGGVKKPHRFRPGTVALREIRKYQKSTELLNRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRAERA 136          
BLAST of CX069902 vs. ExPASy Swiss-Prot
Match: H32_CICIN (Histone H3.2 OS=Cichorium intybus PE=2 SV=3)

HSP 1 Score: 214.927 bits (546), Expect = 2.796e-55
Identity = 114/136 (83.82%), Postives = 115/136 (84.56%), Query Frame = -2
Query:  194 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 601
            MARTKQTARKSTGGKAPRKQLATKA    A ATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKD+QLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAWNTLATATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDMQLARRIRGERA 136          
BLAST of CX069902 vs. ExPASy Swiss-Prot
Match: H31_SCHPO (Histone H3.1/H3.2 OS=Schizosaccharomyces pombe GN=hht1 PE=1 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 3.652e-55
Identity = 110/136 (80.88%), Postives = 117/136 (86.03%), Query Frame = -2
Query:  194 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 601
            MARTKQTARKSTGGKAPRKQLA+KAARK+APATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                V LFEDTNLCAIH KRVTI PKD+QLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136          
BLAST of CX069902 vs. ExPASy Swiss-Prot
Match: H3_MORAP (Histone H3 OS=Mortierella alpina GN=H3.1 PE=3 SV=3)

HSP 1 Score: 214.157 bits (544), Expect = 4.769e-55
Identity = 112/135 (82.96%), Postives = 115/135 (85.19%), Query Frame = -2
Query:  197 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 601
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                V LFEDTNL AIHAKRVTI PKDI LARR+RGER
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEASEAYLVSLFEDTNLAAIHAKRVTIQPKDIHLARRLRGER 135          
BLAST of CX069902 vs. ExPASy Swiss-Prot
Match: H31_LODEL (Histone H3.1/H3.2 OS=Lodderomyces elongisporus GN=HHT1 PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 6.229e-55
Identity = 110/136 (80.88%), Postives = 118/136 (86.76%), Query Frame = -2
Query:  194 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 601
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHR++PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVGLFEDTNLCAIHAKRVTIQKKDIQLARRLRGERS 136          
BLAST of CX069902 vs. ExPASy Swiss-Prot
Match: H3_MASBA (Histone H3 OS=Mastigamoeba balamuthi PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.388e-54
Identity = 113/136 (83.09%), Postives = 116/136 (85.29%), Query Frame = -2
Query:  194 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 601
            MARTKQTARKSTGGKAPRK +ATKA RK+AP  GGVKKPHRFRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKAVATKA-RKTAPPVGGVKKPHRFRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135          
BLAST of CX069902 vs. ExPASy Swiss-Prot
Match: H31_CANAL (Histone H3.1/H3.2 OS=Candida albicans GN=HHT1 PE=3 SV=3)

HSP 1 Score: 212.616 bits (540), Expect = 1.388e-54
Identity = 109/136 (80.15%), Postives = 118/136 (86.76%), Query Frame = -2
Query:  194 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 601
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHR++PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTI  KD+QLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVGLFEDTNLCAIHAKRVTIQKKDMQLARRLRGERS 136          
BLAST of CX069902 vs. ExPASy Swiss-Prot
Match: H33_SCHPO (Histone H3.3 OS=Schizosaccharomyces pombe GN=hht3 PE=1 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 3.091e-54
Identity = 109/136 (80.15%), Postives = 116/136 (85.29%), Query Frame = -2
Query:  194 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 601
            MARTKQTARKSTGGKAPRKQLA+KAARK+APATGGVKKPHR+RP TVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                V LFEDTNLCAIH KRVTI PKD+QLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPPTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136          
BLAST of CX069902 vs. ExPASy Swiss-Prot
Match: H31_PICST (Histone H3.1/H3.2 OS=Pichia stipitis GN=HHT1 PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.091e-54
Identity = 109/136 (80.15%), Postives = 117/136 (86.03%), Query Frame = -2
Query:  194 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 601
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHR++PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRF                V LFEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQKKDIQLARRLRGERS 136          
BLAST of CX069902 vs. ExPASy Swiss-Prot
Match: H31_PICGU (Histone H3.1/H3.2 OS=Pichia guilliermondii GN=HHT1 PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.091e-54
Identity = 109/136 (80.15%), Postives = 117/136 (86.03%), Query Frame = -2
Query:  194 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 601
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHR++PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRF                V LFEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQKKDIQLARRLRGERS 136          
The following BLAST results are available for this feature:
BLAST of CX069902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H3L1_ARATH2.796e-5583.09Histone H3-like 1 OS=Arabidopsis thaliana GN=At1g1... [more]
H32_CICIN2.796e-5583.82Histone H3.2 OS=Cichorium intybus PE=2 SV=3[more]
H31_SCHPO3.652e-5580.88Histone H3.1/H3.2 OS=Schizosaccharomyces pombe GN=... [more]
H3_MORAP4.769e-5582.96Histone H3 OS=Mortierella alpina GN=H3.1 PE=3 SV=3[more]
H31_LODEL6.229e-5580.88Histone H3.1/H3.2 OS=Lodderomyces elongisporus GN=... [more]
H3_MASBA1.388e-5483.09Histone H3 OS=Mastigamoeba balamuthi PE=2 SV=1[more]
H31_CANAL1.388e-5480.15Histone H3.1/H3.2 OS=Candida albicans GN=HHT1 PE=3... [more]
H33_SCHPO3.091e-5480.15Histone H3.3 OS=Schizosaccharomyces pombe GN=hht3 ... [more]
H31_PICST3.091e-5480.15Histone H3.1/H3.2 OS=Pichia stipitis GN=HHT1 PE=3 ... [more]
H31_PICGU3.091e-5480.15Histone H3.1/H3.2 OS=Pichia guilliermondii GN=HHT1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13E11_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13E11-I21-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069902 ID=CX069902; Name=CX069902; organism=Citrus sinensis; type=EST; length=644bp
TTTTTTTTTAAAAGGCTAATTATCTATTAGATTAAAAACCCTCGAAAACA
TTTTAACAAACACCTTAGATACATACTAGACCCGATCTAATCCATCGGAT
AGACATCCAAACATTCATCTAAACCCCAAATATTGACCGAAAGACTAACA
TCGCAGTAAGAGGAACAAAATAAATTAAATCAGAAAGTTCCTAAGCCCTT
TCACCCCTGATCCGCCTAGCAAGCTGAATGTCCTTGGGCATAATAGTGAC
CCTCTTAGCATGAATAGCGCAGAGGTTGGTGTCCTCGAACAGCCCAACAA
GATAAGCCTCAGCAGCCTCCTGAAGTGCAGCAACAGCGCTGCTCTGGAAC
CTCAGATCCGTCTTGAAATCCTGAGCGATTTCCCTCACCAATCTCTGGAA
CGGAAGCTTCCTAATAAGAAGCTCAGTGCTCTTCTGGTACTTCCTGATTT
CACGGAGTGCGACAGTTCCTGGACGGAACCTGTGAGGCTTCTTCACTCCT
CCGGTTGCCGGTGCGGATTTCCTTGCCGCCTTGGTCGCCAGTTGCTTTCT
TGGGGCCTTGCCTCCGGTGGACTTGCGAGCGGTTTGCTTCGTGCGGGCCA
TTGATTTGGGAAATTAAGTGTTTCTTTTTTCTTGGGAGATCTTA
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