CX069886

Overview
NameCX069886
Unique NameCX069886
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069886 vs. ExPASy Swiss-Prot
Match: PROF_DAUCA (Profilin OS=Daucus carota PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 2.001e-44
Identity = 85/123 (69.11%), Postives = 100/123 (81.30%), Query Frame = 2
Query:    2 MCDIDGH---HLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXXQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 361
            MC++DG+    L++AAI+GHDGSVWAQSS FP+FKPEEI  IMK+F+EPG LAPTGL+LGGTKYMVIQGEP AVIR              QAL+FG+YDEP+TPGQCN+IVERLGDYLI+QGL
Sbjct:   12 MCEVDGNPGQQLSAAAIIGHDGSVWAQSSTFPKFKPEEITGIMKNFDEPGHLAPTGLYLGGTKYMVIQGEPIAVIRGKKGSGGVTIKKTGQALVFGVYDEPVTPGQCNLIVERLGDYLIEQGL 134          
BLAST of CX069886 vs. ExPASy Swiss-Prot
Match: PROF2_SOLLC (Profilin-2 OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 2.001e-44
Identity = 85/120 (70.83%), Postives = 96/120 (80.00%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXXQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 361
            +C+ +G+HLTSAAI+G DG+VWAQS+NFPQFKPEEI  IM DF  PG+LAPTGL+LGGTKYMVIQGEP AVIR              QALI GIYDEP+TPGQCNMIVERLGDYLI+Q L
Sbjct:   12 LCENEGNHLTSAAIIGQDGTVWAQSANFPQFKPEEITGIMNDFAVPGTLAPTGLYLGGTKYMVIQGEPEAVIRGKKGPGGITIKKTNQALIIGIYDEPMTPGQCNMIVERLGDYLIEQSL 131          
BLAST of CX069886 vs. ExPASy Swiss-Prot
Match: PROF2_MAIZE (Profilin-2 OS=Zea mays GN=PRO2 PE=2 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 2.001e-44
Identity = 82/120 (68.33%), Postives = 97/120 (80.83%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXXQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 361
            MC+I+GHHL +AAIVGHDG+ WAQS+ FP+FK E++A IMKDF+EPG LAPTGL LG TKYMVIQGEPGAVIR              QAL+ GIYDEP+TPGQCNM+VERLGDYL++QG+
Sbjct:   12 MCEIEGHHLAAAAIVGHDGAAWAQSTAFPEFKTEDMANIMKDFDEPGHLAPTGLFLGPTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALVVGIYDEPMTPGQCNMVVERLGDYLLEQGM 131          
BLAST of CX069886 vs. ExPASy Swiss-Prot
Match: PROF1_SOLLC (Profilin-1 OS=Solanum lycopersicum GN=PRO1 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 2.613e-44
Identity = 85/121 (70.25%), Postives = 97/121 (80.17%), Query Frame = 2
Query:    2 MCDIDG--HHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXXQALIFGIYDEPLTPGQCNMIVERLGDYLIDQG 358
            MCDI+G  HHL+SAAI+G DGSVWAQS NFP+FK EEI  IMKDF+EPG LAPTGL L GTKYMVIQGEPGAVIR              QALIFG+Y+EP+TPGQCNM+VE++GDYL+DQG
Sbjct:   12 MCDIEGTGHHLSSAAILGFDGSVWAQSPNFPKFKAEEITNIMKDFDEPGHLAPTGLFLAGTKYMVIQGEPGAVIRGKKGPGGITIKKTAQALIFGVYEEPVTPGQCNMVVEKIGDYLVDQG 132          
BLAST of CX069886 vs. ExPASy Swiss-Prot
Match: PROF_CROSA (Profilin OS=Crocus sativus PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 4.457e-44
Identity = 81/119 (68.07%), Postives = 94/119 (78.99%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXXQALIFGIYDEPLTPGQCNMIVERLGDYLIDQG 358
            MCD+DGH LTSAAI+GHDGSVWAQS+ FP+ KP EI AI+ DF EPGSLAPTG+++ G KYMVIQGEPG VIR               ALIFG+YDEP+TPGQCN++VERLGDYLI+QG
Sbjct:   12 MCDMDGHVLTSAAILGHDGSVWAQSAGFPELKPAEITAILNDFNEPGSLAPTGMYINGAKYMVIQGEPGVVIRGKKGSGGVTIKKSNMALIFGLYDEPMTPGQCNLVVERLGDYLIEQG 130          
BLAST of CX069886 vs. ExPASy Swiss-Prot
Match: PROF1_AMBAR (Profilin-1 OS=Ambrosia artemisiifolia GN=D106 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 4.457e-44
Identity = 82/119 (68.91%), Postives = 95/119 (79.83%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXXQALIFGIYDEPLTPGQCNMIVERLGDYLIDQG 358
            MC+I+G+HL++AAI+GHDG VWAQS+ FPQ KPEEI  IM DF EPGSLAPTGL+LGGTKYMVIQGEPGAVIR               +LI GIYDEP+TPGQCNM+VER GDYL++QG
Sbjct:   12 MCEIEGNHLSAAAIIGHDGVVWAQSATFPQVKPEEITGIMNDFNEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTTMSLIIGIYDEPMTPGQCNMLVERPGDYLLEQG 130          
BLAST of CX069886 vs. ExPASy Swiss-Prot
Match: PROF3_LILLO (Profilin-3 OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 5.822e-44
Identity = 83/119 (69.75%), Postives = 93/119 (78.15%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXXQALIFGIYDEPLTPGQCNMIVERLGDYLIDQG 358
            MC+IDG HLT+AAI+GH+G +WAQS +FPQ KPE+ AAIM+DF EPGSLAPTGL LG  KYMVIQGEPGAVIR               ALI GIYDEP+TPGQCNM+VERLGDYL DQG
Sbjct:   12 MCEIDGQHLTAAAIIGHEGGIWAQSDSFPQVKPEQTAAIMRDFAEPGSLAPTGLFLGDGKYMVIQGEPGAVIRGKKGSGGVTIKKTNMALIVGIYDEPMTPGQCNMVVERLGDYLYDQG 130          
BLAST of CX069886 vs. ExPASy Swiss-Prot
Match: PROF3_ARATH (Profilin-3 OS=Arabidopsis thaliana GN=PRO3 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 5.822e-44
Identity = 83/123 (67.48%), Postives = 97/123 (78.86%), Query Frame = 2
Query:    2 MCDI---DGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXXQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 361
            MCD+    GHHLT+AAIVGHDGSVWAQS+NFPQFK +E + IMKDF+EPG LAPTGL + G KYMVIQGEPGAVIR              Q+ +FGIY+EP+TPGQCNM+VERLGDYL++QGL
Sbjct:   12 MCDVGDGQGHHLTAAAIVGHDGSVWAQSANFPQFKGQEFSDIMKDFDEPGHLAPTGLFMAGAKYMVIQGEPGAVIRGKKGAGGITIKKTGQSCVFGIYEEPVTPGQCNMVVERLGDYLLEQGL 134          
BLAST of CX069886 vs. ExPASy Swiss-Prot
Match: PROF1_TOBAC (Profilin-1 OS=Nicotiana tabacum GN=PRO1 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 7.603e-44
Identity = 85/122 (69.67%), Postives = 96/122 (78.69%), Query Frame = 2
Query:    2 MCDIDG---HHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXXQALIFGIYDEPLTPGQCNMIVERLGDYLIDQG 358
            M DI+G   HHL +AAI+GHDGSVWAQSS FP+FKPEEI  IMKDF+EPG LAPTGL LGG KYMVIQGEPGAVIR              QALIFGIY+EP+TPGQCNM+VE++ DYL+DQG
Sbjct:   12 MADIEGQQGHHLAAAAILGHDGSVWAQSSTFPKFKPEEITNIMKDFDEPGHLAPTGLFLGGAKYMVIQGEPGAVIRGKKGSGGITIKKTNQALIFGIYEEPVTPGQCNMVVEKIRDYLVDQG 133          
BLAST of CX069886 vs. ExPASy Swiss-Prot
Match: PROF2_LILLO (Profilin-2 OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.694e-43
Identity = 82/119 (68.91%), Postives = 91/119 (76.47%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXXQALIFGIYDEPLTPGQCNMIVERLGDYLIDQG 358
            MC+IDG HLT+AAI+GHDGS+WAQS +FPQ K E+I  +M DF EPGSLAPTGL LG  KYMVIQGEPGAVIR               ALI GIYDEP+TPGQCNM+VERLGDYL DQG
Sbjct:   12 MCEIDGQHLTAAAIIGHDGSIWAQSESFPQVKSEQITGVMNDFAEPGSLAPTGLFLGDNKYMVIQGEPGAVIRGKKGSGGVTIKKTNMALIVGIYDEPMTPGQCNMVVERLGDYLYDQG 130          
The following BLAST results are available for this feature:
BLAST of CX069886 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
PROF_DAUCA2.001e-4469.11Profilin OS=Daucus carota PE=1 SV=1[more]
PROF2_SOLLC2.001e-4470.83Profilin-2 OS=Solanum lycopersicum PE=1 SV=1[more]
PROF2_MAIZE2.001e-4468.33Profilin-2 OS=Zea mays GN=PRO2 PE=2 SV=2[more]
PROF1_SOLLC2.613e-4470.25Profilin-1 OS=Solanum lycopersicum GN=PRO1 PE=2 SV... [more]
PROF_CROSA4.457e-4468.07Profilin OS=Crocus sativus PE=1 SV=1[more]
PROF1_AMBAR4.457e-4468.91Profilin-1 OS=Ambrosia artemisiifolia GN=D106 PE=1... [more]
PROF3_LILLO5.822e-4469.75Profilin-3 OS=Lilium longiflorum PE=2 SV=1[more]
PROF3_ARATH5.822e-4467.48Profilin-3 OS=Arabidopsis thaliana GN=PRO3 PE=2 SV... [more]
PROF1_TOBAC7.603e-4469.67Profilin-1 OS=Nicotiana tabacum GN=PRO1 PE=2 SV=1[more]
PROF2_LILLO1.694e-4368.91Profilin-2 OS=Lilium longiflorum PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_13E03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13E03-I5-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069886 ID=CX069886; Name=CX069886; organism=Citrus sinensis; type=EST; length=486bp
GATGTGCGATATCGACGGCCATCATCTCACCTCAGCTGCGATCGTCGGTC
ACGACGGCAGCGTTTGGGCCCAGAGCTCCAATTTCCCTCAGTTCAAGCCT
GAAGAGATTGCTGCAATCATGAAAGATTTTGAAGAGCCCGGTTCTCTTGC
CCCAACTGGTTTGCACCTTGGAGGCACCAAGTACATGGTAATCCAGGGTG
AGCCTGGAGCTGTGATTCGTGGAAAAAAGGGTTCTGGTGGTGTCACCGTC
AAGAAAACGGGCCAAGCCCTGATTTTTGGTATATACGATGAACCATTGAC
TCCAGGACAGTGCAACATGATCGTTGAGAGGTTGGGGGATTATCTCATTG
ATCAGGGCCTGTAGATTCCATGTCAACTTCAAATGGTTTCGATATATTGC
TTTCTGGTTTTCGGGCTTTGCCTCTTCTTCCATATTTGGTCTTGAACTGG
CAGTATAAATTTGTTTGCTGCAAAAATAACTGTGTG
back to top