CX069885

Overview
NameCX069885
Unique NameCX069885
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length641
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069885 vs. ExPASy Swiss-Prot
Match: PROF3_OLEEU (Profilin-3 OS=Olea europaea GN=PRO3 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 5.786e-45
Identity = 88/123 (71.54%), Postives = 98/123 (79.67%), Query Frame = -1
Query:  282 MCDIDGHH---LTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 641
            MCDI+GH    LT+AAIVGHDGSVWAQS+ FPQFKPEE+  IM DF EPG LAPTGLHLGGTKYMVIQGE GAVIR             GQAL+FGIY+EP+TPGQCNM+ ERLGDYL++QGL
Sbjct:   12 MCDIEGHEGHRLTAAAIVGHDGSVWAQSATFPQFKPEEMNGIMTDFNEPGHLAPTGLHLGGTKYMVIQGEAGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMVAERLGDYLLEQGL 134          
BLAST of CX069885 vs. ExPASy Swiss-Prot
Match: PROF1_HORVU (Profilin-1 OS=Hordeum vulgare GN=PRO1 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 5.786e-45
Identity = 85/118 (72.03%), Postives = 94/118 (79.66%), Query Frame = -1
Query:  285 CDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQG 638
            C+IDG HLTSAAI+GHDG VW QS NFPQFKPEEIA I+KDF+EPG LAPTGL LGGTKYMVIQGEPG VIR             G  LI GIYDEP+TPGQCN++VERLGDYL++QG
Sbjct:   13 CEIDGQHLTSAAILGHDGRVWVQSPNFPQFKPEEIAGIIKDFDEPGHLAPTGLFLGGTKYMVIQGEPGVVIRGKKGTGGITIKKTGMPLILGIYDEPMTPGQCNLVVERLGDYLVEQG 130          
BLAST of CX069885 vs. ExPASy Swiss-Prot
Match: PROF_FRAAN (Profilin OS=Fragaria ananassa PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 9.869e-45
Identity = 82/120 (68.33%), Postives = 99/120 (82.50%), Query Frame = -1
Query:  282 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 641
            MC+I+G+HL++AAI+G DGSVWAQS+ FPQ KPEE+  I++DF+EPG+LAPTGL+LGGTKYMVIQGEPGAVIR               AL+ GIYDEP+TPGQCNMIVERLGDYL++QGL
Sbjct:   12 MCEIEGNHLSAAAIIGQDGSVWAQSATFPQLKPEEVTGIVRDFDEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTVKKTTLALLIGIYDEPMTPGQCNMIVERLGDYLVEQGL 131          
BLAST of CX069885 vs. ExPASy Swiss-Prot
Match: PROF2_AMBAR (Profilin-2 OS=Ambrosia artemisiifolia GN=A0418 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.289e-44
Identity = 84/119 (70.59%), Postives = 95/119 (79.83%), Query Frame = -1
Query:  285 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQG 641
            MC+I+G+HL++AAI+GHDG VWAQS+ FPQ KPEEI  IM DF EPGSLAPTGL+LGGTKYMVIQGEPGAVIR               ALI GIYDEP+ PGQCNMIVERLGDYL++QG
Sbjct:   12 MCEIEGNHLSAAAIIGHDGVVWAQSATFPQVKPEEITGIMNDFNEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTTMALIIGIYDEPMAPGQCNMIVERLGDYLLEQG 130          
BLAST of CX069885 vs. ExPASy Swiss-Prot
Match: PROF4_MAIZE (Profilin-4 OS=Zea mays GN=PRO4 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.683e-44
Identity = 82/119 (68.91%), Postives = 98/119 (82.35%), Query Frame = -1
Query:  285 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQG 641
            MC+I+G HL++AAIVGHDGSVWAQS +FP+ KPEE+A I+KDF+EPG+LAPTGL +GGTKYMVIQGEPG VIR             G +LI G+YDEP+TPGQCNM+VERLGDYLI+QG
Sbjct:   12 MCEIEGQHLSAAAIVGHDGSVWAQSESFPELKPEEVAGIIKDFDEPGTLAPTGLFVGGTKYMVIQGEPGVVIRGKKGTGGITIKKTGMSLIIGVYDEPMTPGQCNMVVERLGDYLIEQG 130          
BLAST of CX069885 vs. ExPASy Swiss-Prot
Match: PROF4_ARATH (Profilin-4 OS=Arabidopsis thaliana GN=PRO4 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.683e-44
Identity = 84/123 (68.29%), Postives = 99/123 (80.49%), Query Frame = -1
Query:  282 MCDI---DGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 641
            MCD+    GHHLT+AAI+GHDGSVWAQS+NFPQFKP+EI  IMKDF+EPG LAPTG+ L G KYMVIQGEP AVIR             GQ+++FG+Y+EP+TPGQCNM+VERLGDYLI+QGL
Sbjct:   12 MCDVGDGQGHHLTAAAIIGHDGSVWAQSANFPQFKPQEITDIMKDFDEPGHLAPTGMFLAGLKYMVIQGEPNAVIRGKKGAGGITIKKTGQSMVFGLYEEPVTPGQCNMVVERLGDYLIEQGL 134          
BLAST of CX069885 vs. ExPASy Swiss-Prot
Match: PROF1_PHAVU (Profilin-1 OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.683e-44
Identity = 83/120 (69.17%), Postives = 98/120 (81.67%), Query Frame = -1
Query:  282 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 641
            +C+I+G+HLT AAI+G DGSVWA+S++FPQFKPEEI  IM DF EPG+LAPTGL++GGTKYMVIQGEPG+VIR               AL+ GIYDEP+TPGQCNMIVERLGDYLI+QGL
Sbjct:   12 LCEIEGNHLTHAAILGQDGSVWAKSASFPQFKPEEITGIMNDFNEPGTLAPTGLYIGGTKYMVIQGEPGSVIRGKKGPGGVTVKKTNLALVIGIYDEPMTPGQCNMIVERLGDYLIEQGL 131          
BLAST of CX069885 vs. ExPASy Swiss-Prot
Match: PROF1_CITSI (Profilin OS=Citrus sinensis PE=1 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 2.199e-44
Identity = 87/120 (72.50%), Postives = 98/120 (81.67%), Query Frame = -1
Query:  282 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 641
            MCDIDG+ LT+AAI+G DGSVW+QS+ FP F+ EEIAAI+KDF++PG+LAPTGL LGGTKYMVIQGE GAVIR              QALI GIYDEPLTPGQCNMIVERLGDYLI+QGL
Sbjct:   12 MCDIDGNRLTAAAILGQDGSVWSQSATFPAFRLEEIAAILKDFDQPGTLAPTGLFLGGTKYMVIQGEAGAVIRGKKGSGGIIVKKTNQALIIGIYDEPLTPGQCNMIVERLGDYLIEQGL 131          
BLAST of CX069885 vs. ExPASy Swiss-Prot
Match: PROF_MERAN (Profilin OS=Mercurialis annua PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.872e-44
Identity = 85/122 (69.67%), Postives = 99/122 (81.15%), Query Frame = -1
Query:  282 MCDIDGH--HLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 641
            MCDIDG   HL +A+IVGHDGS+WAQS++FPQ KPEEI  IMKDF+EPG LAPTGL++ GTKYMVIQGE GAVIR             GQAL+FGIY+EP+TPGQCNM+VERLGDYLI+QG+
Sbjct:   12 MCDIDGQGQHLAAASIVGHDGSIWAQSASFPQLKPEEITGIMKDFDEPGHLAPTGLYIAGTKYMVIQGESGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLIEQGM 133          
BLAST of CX069885 vs. ExPASy Swiss-Prot
Match: PROF3_PHLPR (Profilin-3 OS=Phleum pratense GN=PRO3 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.872e-44
Identity = 82/120 (68.33%), Postives = 96/120 (80.00%), Query Frame = -1
Query:  282 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 641
            MC+I+GHHL SAAI GHDG+VWAQS++FPQFKPEEI  IMKD +EPG LAPTG+ +   KYMVIQGEPGAVIR             GQAL+ GIYDEP+TPGQCNM+VERLGDYL++QG+
Sbjct:   12 MCEIEGHHLASAAIFGHDGTVWAQSADFPQFKPEEITGIMKDLDEPGHLAPTGMFVAAAKYMVIQGEPGAVIRGKKGAGGITIKKTGQALVVGIYDEPMTPGQCNMVVERLGDYLVEQGM 131          
The following BLAST results are available for this feature:
BLAST of CX069885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
PROF3_OLEEU5.786e-4571.54Profilin-3 OS=Olea europaea GN=PRO3 PE=1 SV=1[more]
PROF1_HORVU5.786e-4572.03Profilin-1 OS=Hordeum vulgare GN=PRO1 PE=2 SV=1[more]
PROF_FRAAN9.869e-4568.33Profilin OS=Fragaria ananassa PE=1 SV=1[more]
PROF2_AMBAR1.289e-4470.59Profilin-2 OS=Ambrosia artemisiifolia GN=A0418 PE=... [more]
PROF4_MAIZE1.683e-4468.91Profilin-4 OS=Zea mays GN=PRO4 PE=1 SV=1[more]
PROF4_ARATH1.683e-4468.29Profilin-4 OS=Arabidopsis thaliana GN=PRO4 PE=2 SV... [more]
PROF1_PHAVU1.683e-4469.17Profilin-1 OS=Phaseolus vulgaris PE=1 SV=1[more]
PROF1_CITSI2.199e-4472.50Profilin OS=Citrus sinensis PE=1 SV=2[more]
PROF_MERAN2.872e-4469.67Profilin OS=Mercurialis annua PE=1 SV=1[more]
PROF3_PHLPR2.872e-4468.33Profilin-3 OS=Phleum pratense GN=PRO3 PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_13E03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13E03-I5-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069885 ID=CX069885; Name=CX069885; organism=Citrus sinensis; type=EST; length=641bp
TTTTGAGTATCAACAGTATCCAAAGATTCAAATTCTTCAAAACTGCAATA
CACATAAATTAAGGAAACATGAAGGAATTGGGGATGAAAAAAAAAGATAA
AAAAGGAACCCTAAAGAACCAAAAGAGGCGGGAAAAAAAAAAATCACTCT
TGTCCTCACACAGTTATTTTTGCAGCAAACAAATTTATACTGCCAGTTCA
AGACCAAATATGGAAGAAGAGGCAAAGCCCGAAAACCAGAAAGCAATATA
TCGAAACCATTTGAAGTTGACATGGAATCTACAGGCCCTGATCAATGAGA
TAATCCCCCAACCTCTCAACGATCATGTTGCACTGTCCTGGAGTCAATGG
TTCATCGTATATACCAAAAATCAGGGCTTGGCCCGTTTTCTTGACGGTGA
CACCACCAGAACCCTTTTTTCCACGAATCACAGCTCCAGGCTCACCCTGG
ATTACCATGTACTTGGTGCCTCCAAGGTGCAAACCAGTTGGGGCAAGAGA
ACCGGGCTCTTCAAAATCTTTCATGATTGCAGCAATCTCTTCAGGCTTGA
ACTGAGGGAAATTGGAGCTCTGGGCCCAAACGCTGCCGTCGTGACCGACG
ATCGCAGCTGAGGTGAGATGATGGCCGTCGATATCGCACAT
back to top