CX069885

Overview
NameCX069885
Unique NameCX069885
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length641
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069885 vs. ExPASy Swiss-Prot
Match: PROF2_PARJU (Profilin-2 OS=Parietaria judaica GN=PRO2 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.291e-40
Identity = 81/121 (66.94%), Postives = 94/121 (77.69%), Query Frame = -1
Query:  282 MCDI-DGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 641
            MCD+ DG+ L SAAI+GHDGSVWAQS+NFPQ KPEE+  IM DF E G LAPTGL LGGTKYMVIQGE GAVI              GQA++ GIYDEP+TPGQCN++VERLGDYL++QG+
Sbjct:   12 MCDVGDGNTLASAAIIGHDGSVWAQSANFPQLKPEEVTGIMNDFNEGGFLAPTGLFLGGTKYMVIQGESGAVI-GKKGSGGATLKKTGQAIVIGIYDEPMTPGQCNLVVERLGDYLLEQGM 131          
BLAST of CX069885 vs. ExPASy Swiss-Prot
Match: PROF2_ARTVU (Profilin-2 OS=Artemisia vulgaris PE=1 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 5.245e-38
Identity = 76/122 (62.30%), Postives = 92/122 (75.41%), Query Frame = -1
Query:  282 MCDIDG--HHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 641
            MCDI+G   HLT+AAI+G DG+VWA+S  FP+FKPEE+  I+ +F E G+LAPTGL LGG KYMV+QGE GAVIR             GQA++ GIYDEP+ PGQCNMIVERLGDYL+DQ +
Sbjct:   12 MCDIEGTGQHLTAAAILGLDGTVWAKSDKFPEFKPEEMKGIINEFNEVGTLAPTGLFLGGAKYMVLQGEAGAVIRGKKGAGGICIKKTGQAMVMGIYDEPVAPGQCNMIVERLGDYLVDQNM 133          
BLAST of CX069885 vs. ExPASy Swiss-Prot
Match: PROF_DROME (Profilin OS=Drosophila melanogaster GN=chic PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.815e-14
Identity = 42/111 (37.84%), Postives = 62/111 (55.86%), Query Frame = -1
Query:  285 LTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQG 617
            +T A I GHDG++WAQSS F   K EE++ ++  F++   L   G+ L G +Y+ + G    V+R              QA+I  IY++P+ P Q   +VE+LGDYLI  G
Sbjct:   17 VTKACIAGHDGNIWAQSSGFEVTK-EELSKLISGFDQQDGLTSNGVTLAGQRYIYLSGTD-RVVRAKLGRSGVHCMKTTQAVIVSIYEDPVQPQQAASVVEKLGDYLITCG 125          
BLAST of CX069885 vs. ExPASy Swiss-Prot
Match: PROF_BRABE (Profilin OS=Branchiostoma belcheri PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.815e-14
Identity = 40/112 (35.71%), Postives = 64/112 (57.14%), Query Frame = -1
Query:  282 LTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 617
            +T AAI G DGS+WA+S+   +   +E+A + + F +   LA  G+ +GGTKY+ + G+   +IR               A++  +Y EP+ P QC ++VE+LGD+LI   L
Sbjct:   17 VTMAAICGLDGSIWAKSNGL-ELSQDEVATLARSFSKDEVLAANGIRIGGTKYIYLSGDD-KLIRGKKDRQGVHIVKTKTAMVMALYAEPILPEQCAVVVEKLGDWLIQNDL 126          
BLAST of CX069885 vs. ExPASy Swiss-Prot
Match: PROF_BOMMO (Profilin OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.371e-14
Identity = 41/111 (36.94%), Postives = 62/111 (55.86%), Query Frame = -1
Query:  285 LTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQG 617
            +T AAI GHDG+VWA+S  F +   +E+A I+  FE    L   G+ + GT+Y+ + G    +IR              QA++  +Y+EP+ P Q   +VE+LG+YLI  G
Sbjct:   17 VTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLLTSGGVTIAGTRYIYLSGTDH-IIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCG 125          
BLAST of CX069885 vs. ExPASy Swiss-Prot
Match: PROF_APIME (Profilin OS=Apis mellifera PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.371e-14
Identity = 41/111 (36.94%), Postives = 63/111 (56.76%), Query Frame = -1
Query:  285 LTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQG 617
            +T AAI GHDG++WA+S  F   K EE+  +++ FEE   L  +G+ L G +Y+ + G    VIR              QA++  +Y++P+ P Q   +VE+LGDYL+  G
Sbjct:   17 VTKAAIAGHDGNLWAKSEGFEVSK-EELTKLVQGFEEQDILTSSGVTLAGNRYIYLSGTD-RVIRAKLGKVGVHCMKTTQAVVVSLYEDPIQPQQAASVVEKLGDYLVSCG 125          
BLAST of CX069885 vs. ExPASy Swiss-Prot
Match: PROF1_DICDI (Profilin-1 OS=Dictyostelium discoideum GN=proA PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.007e-13
Identity = 49/119 (41.18%), Postives = 67/119 (56.30%), Query Frame = -1
Query:  285 IDGHHLTSAAIVG-HDGSVWAQSSNFPQFKPEE--IAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQG 632
            + G  L+  AI+G +DG VWA+SS     KPE   IAA+   F+ P  +   G  +GG KYM I+G+P ++               GQA+I GIYD+ + PG   +IVE+LGDYL D G
Sbjct:   11 LTGAGLSQGAILGANDGGVWAKSSGINITKPEGDGIAAL---FKNPAEVFAKGALIGGVKYMGIKGDPQSIY-GKKGATGCVLVRTGQAIIVGIYDDKVQPGSAALIVEKLGDYLRDNG 125          
BLAST of CX069885 vs. ExPASy Swiss-Prot
Match: PROF2_ACACA (Profilin-2 OS=Acanthamoeba castellanii PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.219e-12
Identity = 38/111 (34.23%), Postives = 60/111 (54.05%), Query Frame = -1
Query:  285 LTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQG 617
            +T AAI+GHDG+ WA S+ F    P   AA+   F++  ++   G  L GT+Y+ I+ +  +V                +A++ G+Y+E + PG    +VE+L DYLI QG
Sbjct:   17 VTQAAIIGHDGNTWATSAGFA-VSPANGAALANAFKDATAIRSNGFELAGTRYVTIRADDRSVY-GKKGSAGVITVKTSKAILIGVYNEKIQPGTAANVVEKLADYLIGQG 125          
BLAST of CX069885 vs. ExPASy Swiss-Prot
Match: PROF1_PHYPO (Profilin-A OS=Physarum polycephalum GN=PROA PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.139e-11
Identity = 39/112 (34.82%), Postives = 61/112 (54.46%), Query Frame = -1
Query:  285 HLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQG 620
            H+  AAI+GHDG+VWA S N    K  E A I+  F++  S+   G+ + G KY+ I+ +  ++               GQ+++ G Y+E + PGQ   +VE+L DYL + G
Sbjct:   16 HVIGAAIIGHDGNVWA-SKNL-SLKAGEGAKIVNGFKDSASVLSGGIFVDGQKYLTIKADDKSIY-GKKGAGGVVLVKTGQSVLIGHYNETIQPGQATTVVEKLADYLRENG 124          
The following BLAST results are available for this feature:
BLAST of CX069885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
PROF2_PARJU4.291e-4066.94Profilin-2 OS=Parietaria judaica GN=PRO2 PE=1 SV=1[more]
PROF2_ARTVU5.245e-3862.30Profilin-2 OS=Artemisia vulgaris PE=1 SV=3[more]
PROF_DROME1.815e-1437.84Profilin OS=Drosophila melanogaster GN=chic PE=1 S... [more]
PROF_BRABE1.815e-1435.71Profilin OS=Branchiostoma belcheri PE=2 SV=1[more]
PROF_BOMMO2.371e-1436.94Profilin OS=Bombyx mori PE=2 SV=1[more]
PROF_APIME2.371e-1436.94Profilin OS=Apis mellifera PE=2 SV=1[more]
PROF1_DICDI2.007e-1341.18Profilin-1 OS=Dictyostelium discoideum GN=proA PE=... [more]
PROF2_ACACA2.219e-1234.23Profilin-2 OS=Acanthamoeba castellanii PE=1 SV=3[more]
PROF1_PHYPO7.139e-1134.82Profilin-A OS=Physarum polycephalum GN=PROA PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13E03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13E03-I5-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069885 ID=CX069885; Name=CX069885; organism=Citrus sinensis; type=EST; length=641bp
TTTTGAGTATCAACAGTATCCAAAGATTCAAATTCTTCAAAACTGCAATA
CACATAAATTAAGGAAACATGAAGGAATTGGGGATGAAAAAAAAAGATAA
AAAAGGAACCCTAAAGAACCAAAAGAGGCGGGAAAAAAAAAAATCACTCT
TGTCCTCACACAGTTATTTTTGCAGCAAACAAATTTATACTGCCAGTTCA
AGACCAAATATGGAAGAAGAGGCAAAGCCCGAAAACCAGAAAGCAATATA
TCGAAACCATTTGAAGTTGACATGGAATCTACAGGCCCTGATCAATGAGA
TAATCCCCCAACCTCTCAACGATCATGTTGCACTGTCCTGGAGTCAATGG
TTCATCGTATATACCAAAAATCAGGGCTTGGCCCGTTTTCTTGACGGTGA
CACCACCAGAACCCTTTTTTCCACGAATCACAGCTCCAGGCTCACCCTGG
ATTACCATGTACTTGGTGCCTCCAAGGTGCAAACCAGTTGGGGCAAGAGA
ACCGGGCTCTTCAAAATCTTTCATGATTGCAGCAATCTCTTCAGGCTTGA
ACTGAGGGAAATTGGAGCTCTGGGCCCAAACGCTGCCGTCGTGACCGACG
ATCGCAGCTGAGGTGAGATGATGGCCGTCGATATCGCACAT
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