CX069822

Overview
NameCX069822
Unique NameCX069822
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length299
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P1_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Trichoderma koningii GN=gpd1 PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 9.201e-17
Identity = 46/95 (48.42%), Postives = 58/95 (61.05%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 288
            KYDS HG +K  ++KV D K L+   K +  +  R+P  IPW  +GAEY+VESTGVFT               V+ISAPS DAPM+V+GVNE  Y
Sbjct:   47 KYDSTHGRFK-GDIKV-DGKDLVIDGKRIKFYQERDPANIPWKDSGAEYIVESTGVFTTTEKASAHFKGGAKKVIISAPSADAPMYVMGVNEDTY 139          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P_PONAB (Glyceraldehyde-3-phosphate dehydrogenase OS=Pongo abelii GN=GAPDH PE=2 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 1.202e-16
Identity = 44/95 (46.32%), Postives = 59/95 (62.11%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 288
            +YDS HG + H  +K ++ K ++ G  P+ +F  R+P +I W   GAEYVVESTGVFT               V+ISAPS DAPMFV+GVN ++Y
Sbjct:   48 QYDSTHGKF-HGTVKAENGKLVINGN-PITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFVMGVNHEKY 140          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P_PODAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Podospora anserina GN=GPD PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.202e-16
Identity = 47/96 (48.96%), Postives = 58/96 (60.42%), Query Frame = 1
Query:    1 LKYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 288
            LKYDS HG +K   ++V     ++ G K V  +  R+P  IPW  TGAEY+VESTGVFT               V+ISAPS DAPM+V+GVNEK Y
Sbjct:   46 LKYDSTHGVFK-GTIQVSGSDLIVNG-KTVKFYTERDPSAIPWKDTGAEYIVESTGVFTTTEKASAHLKGGAKRVIISAPSADAPMYVMGVNEKTY 139          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Homo sapiens GN=GAPDH PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 1.202e-16
Identity = 44/95 (46.32%), Postives = 59/95 (62.11%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 288
            +YDS HG + H  +K ++ K ++ G  P+ +F  R+P +I W   GAEYVVESTGVFT               V+ISAPS DAPMFV+GVN ++Y
Sbjct:   48 QYDSTHGKF-HGTVKAENGKLVINGN-PITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFVMGVNHEKY 140          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3PT_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Bos taurus GN=GAPDHS PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.569e-16
Identity = 44/97 (45.36%), Postives = 56/97 (57.73%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKP 294
            KYDS HG +K N    K +  L+     ++VF  + P+EIPW   G+ +VVE+TGV+                VVI APS DAPMFV+GVNEKEY P
Sbjct:  106 KYDSTHGRYKGNVEHKKGQ--LVVDNNEISVFQCKQPKEIPWKSVGSPFVVEATGVYLSLEETKAHIEAGAQRVVICAPSPDAPMFVMGVNEKEYNP 200          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P_TRISI (Glyceraldehyde-3-phosphate dehydrogenase OS=Trionyx sinensis GN=GAPDH PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.050e-16
Identity = 45/95 (47.37%), Postives = 58/95 (61.05%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 288
            KYDS HG + H  +K ++ K ++ G+  + +F  R+P  I W   GAEYVVESTGVFT               VVISAPS DAPMFV+GVN ++Y
Sbjct:   46 KYDSTHGRF-HGTVKAENGKLVINGQA-ITIFQERDPANIKWGDAGAEYVVESTGVFTTTEKASAHLKGGAKRVVISAPSADAPMFVMGVNHEKY 138          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mus musculus GN=Gapdh PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.050e-16
Identity = 44/95 (46.32%), Postives = 60/95 (63.16%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 288
            +YDS HG + +  +K ++ K ++ G KP+ +F  R+P  I W + GAEYVVESTGVFT               V+ISAPS DAPMFV+GVN ++Y
Sbjct:   46 QYDSTHGKF-NGTVKAENGKLVING-KPITIFQERDPTNIKWGEAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKY 138          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P3_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Rhizomucor racemosus GN=GPD3 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.050e-16
Identity = 46/95 (48.42%), Postives = 59/95 (62.11%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 288
            KYDS HG +K   ++ KD K ++ G + +AV   R+P +IPW   GA+YV+ESTGVFT               V+ISAPS DAPMFVVGVN  +Y
Sbjct:   48 KYDSTHGRFK-GTVEHKDGKLVVNGHE-IAVHAERDPAQIPWGSHGADYVIESTGVFTTKDAASAHLKGGAKKVIISAPSADAPMFVVGVNLDKY 140          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P_SPECI (Glyceraldehyde-3-phosphate dehydrogenase OS=Spermophilus citellus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 3.496e-16
Identity = 44/95 (46.32%), Postives = 59/95 (62.11%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 288
            +YDS HG + H  +K ++ K ++ G K +++F  R+P  I W   GAEYVVESTGVFT               V+ISAPS DAPMFV+GVN ++Y
Sbjct:   46 QYDSTHGKF-HGTVKAENGKLVING-KSISIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKY 138          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P_RAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus norvegicus GN=Gapdh PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 3.496e-16
Identity = 44/95 (46.32%), Postives = 59/95 (62.11%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 288
            +YDS HG + +  +K ++ K ++ G KP+ +F  R+P  I W   GAEYVVESTGVFT               V+ISAPS DAPMFV+GVN ++Y
Sbjct:   46 QYDSTHGKF-NGTVKAENGKLVING-KPITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKY 138          
The following BLAST results are available for this feature:
BLAST of CX069822 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
G3P1_TRIKO9.201e-1748.42Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Tric... [more]
G3P_PONAB1.202e-1646.32Glyceraldehyde-3-phosphate dehydrogenase OS=Pongo ... [more]
G3P_PODAN1.202e-1648.96Glyceraldehyde-3-phosphate dehydrogenase OS=Podosp... [more]
G3P_HUMAN1.202e-1646.32Glyceraldehyde-3-phosphate dehydrogenase OS=Homo s... [more]
G3PT_BOVIN1.569e-1645.36Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P_TRISI2.050e-1647.37Glyceraldehyde-3-phosphate dehydrogenase OS=Triony... [more]
G3P_MOUSE2.050e-1646.32Glyceraldehyde-3-phosphate dehydrogenase OS=Mus mu... [more]
G3P3_RHIRA2.050e-1648.42Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Rhiz... [more]
G3P_SPECI3.496e-1646.32Glyceraldehyde-3-phosphate dehydrogenase OS=Spermo... [more]
G3P_RAT3.496e-1646.32Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13A08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13A08-A15-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069822 ID=CX069822; Name=CX069822; organism=Citrus sinensis; type=EST; length=299bp
CTTAAGTACGATAGTGTTCACGGTCATTGGAAGCACAACGAGTTGAAGGT
CAAGGACGAGAAGACCCTCCTCTTCGGTGAGAAGCCAGTCGCTGTTTTCG
GATTCAGGAACCCAGAGGAGATCCCATGGGCAAAGACTGGAGCCGAGTAT
GTTGTGGAATCAACTGGAGTGTTCACTGACAAGGACAAGGCTGCTGCTCA
CTTGAAGGGTGGTGCCAAGAAGGTCGTTATCTCCGCCCCTAGCAAGGATG
CTCCCATGTTTGTTGTGGGCGTCAACGAGAAAGAATACAAGCCAGAGCT
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