CX069802

Overview
NameCX069802
Unique NameCX069802
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_NEOSM (ATP synthase subunit alpha OS=Neorickettsia sennetsu (strain Miyayama) GN=atpA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.802e-26
Identity = 58/75 (77.33%), Postives = 67/75 (89.33%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K SD+ GAGSLTALP+IETQAGDVSAYIPTNVISITDGQI LETELF +G++PA+NVGLSVSRVGS   + A++Q
Sbjct:  313 KMSDKHGAGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETELFNKGVKPAVNVGLSVSRVGSAAQIKAIKQ 387          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_DROME (ATP synthase subunit alpha, mitochondrial OS=Drosophila melanogaster GN=blw PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 5.802e-26
Identity = 61/75 (81.33%), Postives = 64/75 (85.33%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K S   G GSLTALPVIETQAGDVSAYIPTNVISITDGQI LETELFY+GIRPAINVGLSVSRVGS     A++Q
Sbjct:  353 KMSPAMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQ 427          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_GEOSM (ATP synthase subunit alpha OS=Geobacter sp. (strain M21) GN=atpA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.578e-26
Identity = 61/80 (76.25%), Postives = 67/80 (83.75%), Query Frame = -2
Query:  616 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQKIFTI 855
            K SD  GAGSLTALPVIETQAGDVSAYIPTNVISITDGQI LE++LFY G+RPAINVGLSVSRVG    V A++Q   T+
Sbjct:  303 KVSDDCGAGSLTALPVIETQAGDVSAYIPTNVISITDGQIYLESDLFYSGVRPAINVGLSVSRVGGSAQVKAMKQVAGTL 382          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_GEOSL (ATP synthase subunit alpha OS=Geobacter sulfurreducens GN=atpA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.578e-26
Identity = 60/80 (75.00%), Postives = 67/80 (83.75%), Query Frame = -2
Query:  616 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQKIFTI 855
            K SD  GAGSLTALP+IETQAGDVSAYIPTNVISITDGQI LE++LFY G+RPAINVGLSVSRVG    V A++Q   T+
Sbjct:  304 KLSDDCGAGSLTALPIIETQAGDVSAYIPTNVISITDGQIYLESDLFYSGVRPAINVGLSVSRVGGSAQVKAMKQVAGTL 383          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_GEOMG (ATP synthase subunit alpha OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=atpA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.578e-26
Identity = 60/80 (75.00%), Postives = 67/80 (83.75%), Query Frame = -2
Query:  616 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQKIFTI 855
            K SD  GAGSLTALP+IETQAGDVSAYIPTNVISITDGQI LE++LFY G+RPAINVGLSVSRVG    V A++Q   T+
Sbjct:  304 KLSDDCGAGSLTALPIIETQAGDVSAYIPTNVISITDGQIYLESDLFYSGVRPAINVGLSVSRVGGSAQVKAMKQVAGTL 383          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_GEOBB (ATP synthase subunit alpha OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=atpA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.578e-26
Identity = 61/80 (76.25%), Postives = 67/80 (83.75%), Query Frame = -2
Query:  616 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQKIFTI 855
            K SD  GAGSLTALPVIETQAGDVSAYIPTNVISITDGQI LE++LFY G+RPAINVGLSVSRVG    V A++Q   T+
Sbjct:  303 KVSDDCGAGSLTALPVIETQAGDVSAYIPTNVISITDGQIYLESDLFYSGVRPAINVGLSVSRVGGSAQVKAMKQVAGTL 382          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_CAEEL (ATP synthase subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=H28O16.1 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.578e-26
Identity = 59/75 (78.67%), Postives = 65/75 (86.67%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K ++  G GSLTALPVIETQAGDVSAYIPTNVISITDGQI LETELFY+G+RPAINVGLSVSRVGS     A++Q
Sbjct:  339 KMNNSLGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGVRPAINVGLSVSRVGSAAQTKAMKQ 413          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_RICTY (ATP synthase subunit alpha OS=Rickettsia typhi GN=atpA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.898e-26
Identity = 56/75 (74.67%), Postives = 67/75 (89.33%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K S++ G GSLTALP+IETQAGDVSAYIPTNVISITDGQI LE++LFY+GIRPA+NVG+SVSRVGS   + A++Q
Sbjct:  311 KMSEEKGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESDLFYKGIRPAVNVGISVSRVGSAAQIKAMKQ 385          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_RICPU (ATP synthase subunit alpha OS=Rickettsia peacockii (strain Rustic) GN=atpA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.898e-26
Identity = 56/75 (74.67%), Postives = 67/75 (89.33%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K S+  G+GSLTALP+IETQAGDVSAYIPTNVISITDGQI LE+ELFY+G+RPA+NVG+SVSRVGS   + A++Q
Sbjct:  311 KMSEAKGSGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESELFYKGVRPAVNVGISVSRVGSAAQIKAMKQ 385          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_RICM5 (ATP synthase subunit alpha OS=Rickettsia massiliae (strain Mtu5) GN=atpA PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 9.898e-26
Identity = 56/75 (74.67%), Postives = 67/75 (89.33%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K S+  G+GSLTALP+IETQAGDVSAYIPTNVISITDGQI LE+ELFY+G+RPA+NVG+SVSRVGS   + A++Q
Sbjct:  311 KMSEAKGSGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESELFYKGVRPAVNVGISVSRVGSAAQIKAMKQ 385          
The following BLAST results are available for this feature:
BLAST of CX069802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_NEOSM5.802e-2677.33ATP synthase subunit alpha OS=Neorickettsia sennet... [more]
ATPA_DROME5.802e-2681.33ATP synthase subunit alpha, mitochondrial OS=Droso... [more]
ATPA_GEOSM7.578e-2676.25ATP synthase subunit alpha OS=Geobacter sp. (strai... [more]
ATPA_GEOSL7.578e-2675.00ATP synthase subunit alpha OS=Geobacter sulfurredu... [more]
ATPA_GEOMG7.578e-2675.00ATP synthase subunit alpha OS=Geobacter metallired... [more]
ATPA_GEOBB7.578e-2676.25ATP synthase subunit alpha OS=Geobacter bemidjiens... [more]
ATPA_CAEEL7.578e-2678.67ATP synthase subunit alpha, mitochondrial OS=Caeno... [more]
ATPA_RICTY9.898e-2674.67ATP synthase subunit alpha OS=Rickettsia typhi GN=... [more]
ATPA_RICPU9.898e-2674.67ATP synthase subunit alpha OS=Rickettsia peacockii... [more]
ATPA_RICM59.898e-2674.67ATP synthase subunit alpha OS=Rickettsia massiliae... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12H04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12H04-P8-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069802 ID=CX069802; Name=CX069802; organism=Citrus sinensis; type=EST; length=856bp
ATTGTTAATAGCTCGTCTCACTCGCCTATATGGGAGACTTTGGCGAGTCC
CATTTCGTTCGATTTGCTCTAGATGGGAGAGCAAAGTGCGTTGGGATAAT
AGAGGGTTCTCCCTGTCGCTATTAGTATGATTAAAGAGCACCCCCCGTAT
ATCCGGTAAGTTATGAAAGATTCTCCACGGAGAGAACCCATCATCAATTA
ACGCGGATTCGATTCGTTTCTCAATTCGAAAATGAGACTCTAAAATCTCT
AAGAAGGATGGTAGGTGAGCAGAAGTGTGCTTTCCTACGAAATATAAAGA
AAGCCTCCGCGCTAGAATCTGTCTGCGGATAGAATCCTGCAGTAGCGGCG
GGTGTTCCGGGATTACCGGGGGAGAGGGGGGTTCAACGGGTACTGTTTCT
TGGCCGTGAGGAGGTCCCTCTTGCGCTTGGGCAAGCCAATCCACAATTGG
AGGTGAATCGATCTGCCCGTCGCAGAAGGCTAGAGGTATAGTACTCTGAA
AAGAAATAAGAATGAAGAAGATAAAACCCCACATTAAGATTTTAATTGGG
TTTTTTCTTTTAAAAATATCATTAGTGGATTCCCATTGGTTAGGAGAACC
CAAAGGCAAAGGCGTGATCGTGAAAATTTTTTGTTGGAGCGCGGAAACAT
TCACAATAGAGCCAACGCGACTGACAGATAAGCCGACGTTAATAGCGGGT
CTAATTCCGCGATAAAAGAGCTCTGTTTCCAAACAAATTTGTCCGTCAGT
AATTGAAATAACATTTGTAGGAATATAAGCCGATACATCTCCAGCTTGTG
TTTCAATGACGGGTAAGGCGGTCAAGCTACCTGCACCTGTCTGGTCCGAT
CGTTTC
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