CX069802

Overview
NameCX069802
Unique NameCX069802
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_CAMLR (ATP synthase subunit alpha OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=atpA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.761e-25
Identity = 59/75 (78.67%), Postives = 64/75 (85.33%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K SD+ GAGSLTALP+IETQAGDVSAYIPTNVISITDGQI LET+LF  GIRPAINVGLSVSRVG    + A +Q
Sbjct:  303 KLSDELGAGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNSGIRPAINVGLSVSRVGGAAQIKATKQ 377          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_SULSY (ATP synthase subunit alpha OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=atpA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.912e-25
Identity = 56/80 (70.00%), Postives = 67/80 (83.75%), Query Frame = -2
Query:  616 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQKIFTI 855
            K +D+ GAGSLTALP+IETQAGDV+AYIPTNVISITDGQI LE +LFY+GIRPAIN G+SVSRVG    + A++Q   T+
Sbjct:  305 KLNDELGAGSLTALPIIETQAGDVAAYIPTNVISITDGQIFLEADLFYKGIRPAINAGISVSRVGGAAQIKAMKQVAGTL 384          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_SPHWW (ATP synthase subunit alpha OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=atpA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.912e-25
Identity = 57/75 (76.00%), Postives = 65/75 (86.67%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K +D  G GSLTALP+IETQAGDVSAYIPTNVISITDGQI LET+LFY+G+RPAINVGLSVSRVGS     A+++
Sbjct:  311 KLNDANGNGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFYQGVRPAINVGLSVSRVGSAAQTKAMKK 385          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_SINMW (ATP synthase subunit alpha OS=Sinorhizobium medicae (strain WSM419) GN=atpA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.912e-25
Identity = 57/75 (76.00%), Postives = 65/75 (86.67%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K +D  GAGSLTALPVIETQ  DVSA+IPTNVISITDGQI LET+LFY+GIRPA+NVGLSVSRVGS   + A++Q
Sbjct:  311 KLNDDNGAGSLTALPVIETQGNDVSAFIPTNVISITDGQIFLETDLFYQGIRPAVNVGLSVSRVGSSAQIKAMKQ 385          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_RHISN (ATP synthase subunit alpha OS=Rhizobium sp. (strain NGR234) GN=atpA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.912e-25
Identity = 57/75 (76.00%), Postives = 65/75 (86.67%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K +D  GAGSLTALPVIETQ  DVSA+IPTNVISITDGQI LET+LFY+GIRPA+NVGLSVSRVGS   + A++Q
Sbjct:  311 KLNDDNGAGSLTALPVIETQGNDVSAFIPTNVISITDGQIFLETDLFYQGIRPAVNVGLSVSRVGSSAQIKAMKQ 385          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_RHILW (ATP synthase subunit alpha OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=atpA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.912e-25
Identity = 57/75 (76.00%), Postives = 65/75 (86.67%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K +D  GAGSLTALPVIETQ  DVSA+IPTNVISITDGQI LET+LFY+GIRPA+NVGLSVSRVGS   + A++Q
Sbjct:  311 KMNDDKGAGSLTALPVIETQGNDVSAFIPTNVISITDGQIFLETDLFYQGIRPAVNVGLSVSRVGSSAQIKAMKQ 385          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_RHIEC (ATP synthase subunit alpha OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=atpA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.912e-25
Identity = 57/75 (76.00%), Postives = 65/75 (86.67%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K +D  GAGSLTALPVIETQ  DVSA+IPTNVISITDGQI LET+LFY+GIRPA+NVGLSVSRVGS   + A++Q
Sbjct:  311 KMNDDKGAGSLTALPVIETQGNDVSAFIPTNVISITDGQIFLETDLFYQGIRPAVNVGLSVSRVGSSAQIKAMKQ 385          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_RHIE6 (ATP synthase subunit alpha OS=Rhizobium etli (strain CIAT 652) GN=atpA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.912e-25
Identity = 57/75 (76.00%), Postives = 65/75 (86.67%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K +D  GAGSLTALPVIETQ  DVSA+IPTNVISITDGQI LET+LFY+GIRPA+NVGLSVSRVGS   + A++Q
Sbjct:  311 KMNDDKGAGSLTALPVIETQGNDVSAFIPTNVISITDGQIFLETDLFYQGIRPAVNVGLSVSRVGSSAQIKAMKQ 385          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_METS4 (ATP synthase subunit alpha OS=Methylobacterium sp. (strain 4-46) GN=atpA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.912e-25
Identity = 57/75 (76.00%), Postives = 64/75 (85.33%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K  D  GAGSLTALPVIETQA DVSAYIPTNVISITDGQI LET+LFY+G+RPA+NVGLSVSRVGS     A+++
Sbjct:  311 KMGDAAGAGSLTALPVIETQANDVSAYIPTNVISITDGQIFLETDLFYQGVRPAVNVGLSVSRVGSAAQTKAMKK 385          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_METNO (ATP synthase subunit alpha OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=atpA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.912e-25
Identity = 57/75 (76.00%), Postives = 64/75 (85.33%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K  D  GAGSLTALPVIETQA DVSAYIPTNVISITDGQI LET+LFY+G+RPA+NVGLSVSRVGS     A+++
Sbjct:  311 KMGDAAGAGSLTALPVIETQANDVSAYIPTNVISITDGQIFLETDLFYQGVRPAVNVGLSVSRVGSAAQTKAMKK 385          
The following BLAST results are available for this feature:
BLAST of CX069802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_CAMLR3.761e-2578.67ATP synthase subunit alpha OS=Campylobacter lari (... [more]
ATPA_SULSY4.912e-2570.00ATP synthase subunit alpha OS=Sulfurihydrogenibium... [more]
ATPA_SPHWW4.912e-2576.00ATP synthase subunit alpha OS=Sphingomonas wittich... [more]
ATPA_SINMW4.912e-2576.00ATP synthase subunit alpha OS=Sinorhizobium medica... [more]
ATPA_RHISN4.912e-2576.00ATP synthase subunit alpha OS=Rhizobium sp. (strai... [more]
ATPA_RHILW4.912e-2576.00ATP synthase subunit alpha OS=Rhizobium leguminosa... [more]
ATPA_RHIEC4.912e-2576.00ATP synthase subunit alpha OS=Rhizobium etli (stra... [more]
ATPA_RHIE64.912e-2576.00ATP synthase subunit alpha OS=Rhizobium etli (stra... [more]
ATPA_METS44.912e-2576.00ATP synthase subunit alpha OS=Methylobacterium sp.... [more]
ATPA_METNO4.912e-2576.00ATP synthase subunit alpha OS=Methylobacterium nod... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12H04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12H04-P8-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069802 ID=CX069802; Name=CX069802; organism=Citrus sinensis; type=EST; length=856bp
ATTGTTAATAGCTCGTCTCACTCGCCTATATGGGAGACTTTGGCGAGTCC
CATTTCGTTCGATTTGCTCTAGATGGGAGAGCAAAGTGCGTTGGGATAAT
AGAGGGTTCTCCCTGTCGCTATTAGTATGATTAAAGAGCACCCCCCGTAT
ATCCGGTAAGTTATGAAAGATTCTCCACGGAGAGAACCCATCATCAATTA
ACGCGGATTCGATTCGTTTCTCAATTCGAAAATGAGACTCTAAAATCTCT
AAGAAGGATGGTAGGTGAGCAGAAGTGTGCTTTCCTACGAAATATAAAGA
AAGCCTCCGCGCTAGAATCTGTCTGCGGATAGAATCCTGCAGTAGCGGCG
GGTGTTCCGGGATTACCGGGGGAGAGGGGGGTTCAACGGGTACTGTTTCT
TGGCCGTGAGGAGGTCCCTCTTGCGCTTGGGCAAGCCAATCCACAATTGG
AGGTGAATCGATCTGCCCGTCGCAGAAGGCTAGAGGTATAGTACTCTGAA
AAGAAATAAGAATGAAGAAGATAAAACCCCACATTAAGATTTTAATTGGG
TTTTTTCTTTTAAAAATATCATTAGTGGATTCCCATTGGTTAGGAGAACC
CAAAGGCAAAGGCGTGATCGTGAAAATTTTTTGTTGGAGCGCGGAAACAT
TCACAATAGAGCCAACGCGACTGACAGATAAGCCGACGTTAATAGCGGGT
CTAATTCCGCGATAAAAGAGCTCTGTTTCCAAACAAATTTGTCCGTCAGT
AATTGAAATAACATTTGTAGGAATATAAGCCGATACATCTCCAGCTTGTG
TTTCAATGACGGGTAAGGCGGTCAAGCTACCTGCACCTGTCTGGTCCGAT
CGTTTC
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