CX069795

Overview
NameCX069795
Unique NameCX069795
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length471
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069795 vs. ExPASy Swiss-Prot
Match: DCNL4_MOUSE (DCN1-like protein 4 OS=Mus musculus GN=Dcun1d4 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.068e-19
Identity = 51/133 (38.35%), Postives = 81/133 (60.90%), Query Frame = 2
Query:   62 DMILVDGITLLCIDLHVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLDKFRERISFMRAELKDEQKFREIYNFAFAWAKEKGQKSLALDTAIGMWQLLFAEKQWPLVDHWCQFLQAKHNKAILK 460
            D +  +G+   C D+ V+P+++VMLV++W + A  M  F+ QE++ G+ SL  D+ +K R  + ++R+ L D   F+ IY +AF +A+EK Q+SL ++TA  M  LL   K WPL   + QFL+    K I K
Sbjct:  118 DAVGPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRTTLDYLRSLLNDTTNFKLIYRYAFDFAREKDQRSLDINTAKCMLGLLLG-KIWPLFPVFHQFLEQSKYKVINK 249          
BLAST of CX069795 vs. ExPASy Swiss-Prot
Match: DCN1_CAEEL (Defective in cullin neddylation protein 1 OS=Caenorhabditis elegans GN=dcn-1 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 4.607e-19
Identity = 54/152 (35.53%), Postives = 86/152 (56.58%), Query Frame = 2
Query:   11 DTRHLEELYNRYKDPYLDM----ILVDGITLLCIDLHVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLDKFRERISFMRAELK-DEQKFREIYNFAFAWAKEKGQKSLALDTAIGMWQLLFAEKQWPLVDHWCQFLQAKHNKA 451
            D  ++E L+N+Y DP   +    +   GI  L  DL  +  D  +LV++W   A T CEFS  E++ G+ +L  D++   R+RI  + + L+ D+ KF E+Y FAF +AK    ++L L+TAI  W +LF ++   ++  W  FL A+ N A
Sbjct:   61 DRSNIERLFNQYVDPKDKVGEKRMGPHGINRLLTDLGYEATDRRVLVLAWKFTAQTQCEFSLDEWVKGMTALQADTVQNLRQRIDSINSGLESDKAKFHELYLFAFNYAKSAACRNLDLETAICCWDVLFGQRS-TIMTQWIDFLWAQENAA 211          
BLAST of CX069795 vs. ExPASy Swiss-Prot
Match: DCN1_CAEBR (Defective in cullin neddylation protein 1 OS=Caenorhabditis briggsae GN=dcn-1 PE=3 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 7.355e-17
Identity = 50/145 (34.48%), Postives = 80/145 (55.17%), Query Frame = 2
Query:   29 ELYNRY---KDPYLDMILVDGITLLCIDLHVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLDKFRERISFMRAELK-DEQKFREIYNFAFAWAKEKGQKSLALDTAIGMWQLLFAEKQWPLVDHWCQFLQAKHNKA 451
            +L+ +Y   +D   + I   G+  L IDL  +P D  +L+++W  KA T CEFS QEF  G+ SL +DS+   +++I  + A +K D  K R++  F F + K    +SL L+ AI  W ++F  ++ PL+  W  FL  +   A
Sbjct:  141 QLFTQYVDKRDGLGERIGPHGMQRLLIDLGYEPIDRRVLILAWVFKAETQCEFSLQEFTNGMASLQVDSIQGLKQKIDALDAGMKADLTKTRDLCIFTFNYGKSAASRSLDLEMAICYWDVIFGARK-PLMSQWIDFLYGQERMA 284          
BLAST of CX069795 vs. ExPASy Swiss-Prot
Match: DCN1_USTMA (Defective in cullin neddylation protein 1 OS=Ustilago maydis GN=DCN1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.892e-13
Identity = 39/131 (29.77%), Postives = 73/131 (55.73%), Query Frame = 2
Query:   62 DMILVDGITLLCIDLHVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGI-DSLDKFRERISFMRAELKDEQKFR-----------------------EIYNFAFAWAKEKGQKSLALDTAIGMWQLL 382
            D+I + G   +C  L V P+D+V L +S+++K+A+M  F+++ +I G + L + D++DK ++ +  +R EL D +  R                       ++Y + +A+A+ +GQKSLAL+ A+  W L+
Sbjct:  100 DLISIGGALKMCEALEVSPEDVVFLPLSYYLKSASMGTFTREGYINGWKMLDLSDTIDKQKKTLEKLRQELLDNKPLRLERIAQEKSNPATASGANKGLYEKVYEYTYAFARREGQKSLALENALAFWDLV 230          
BLAST of CX069795 vs. ExPASy Swiss-Prot
Match: DCN1M_DICDI (DCN1-like protein 2 OS=Dictyostelium discoideum GN=DDB_G0272016 PE=4 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.777e-13
Identity = 51/152 (33.55%), Postives = 79/152 (51.97%), Query Frame = 2
Query:   20 HLEELYNRYKDPYLD---MILVDGITLLCIDLHVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLDKFRERISFMRAELK-DEQKFREIYNFAFAWAKE-KGQKSLALDTAIGMWQLLFAEKQWPLVDHWCQFLQAKHNKAILK 460
            H   LY    + +LD    I  +GI   C D+ + P    +LV++W M A+ M  FSK EF  G + L    L   +++++    +LK D  KF ++Y +AF +A E + +KS+ L TA  M +LL  E   P   ++  FL  + NK+I K
Sbjct:   75 HYTYLYTYIFNVHLDDDETIGPEGIARFCSDIGLAPDSFEILVLAWTMNASKMGYFSKNEFSSGFEKLQCSDLSTLKKQLNSTSQKLKHDSTKFTDLYKYAFGFASEVESKKSVDLGTAAEMLKLLLPE--GPHTTNFAAFLCTQPNKSINK 224          
BLAST of CX069795 vs. ExPASy Swiss-Prot
Match: DCN1_CRYNE (Defective in cullin neddylation protein 1 OS=Cryptococcus neoformans GN=DCN1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.933e-13
Identity = 56/175 (32.00%), Postives = 87/175 (49.71%), Query Frame = 2
Query:   17 RHLEELYNRYKDPY-LDMILVDGITLLCIDLHVDP-QDIVMLVVSWHMKAATMCEFSKQEFIGGLQSL--GIDSLDKFRERISFMRAEL-KDEQKFREIYNFAFAWAKEKGQ---KSLALDTAIGMWQLLF-------------------AEKQWPLVDHWCQFLQAKHNKAILK 460
            R L E++ ++KDP    +I +DG   LC +L +DP  D V+  ++  + +    E+ K  F+ G+ S    IDSL K +  +  +R +L  D + F+++YN AF  A+   Q   +SL LDTAI +W L F                    +   P  D W +F+Q K NKA+ K
Sbjct:   62 RKLGEIWEKFKDPSDPKLIKIDGTMELCEELDIDPGTDAVLFCLAADLGSKATGEWEKAPFVAGIASYPGNIDSLPKLKAYLPTLRKKLVSDPEYFKKVYNHAFQLARGGPQSLTRSLPLDTAIDLWTLFFPPAFNHSPSALSHLPDNSPPQFTQPEFDLWIEFMQQK-NKAVSK 235          
The following BLAST results are available for this feature:
BLAST of CX069795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
DCNL4_MOUSE2.068e-1938.35DCN1-like protein 4 OS=Mus musculus GN=Dcun1d4 PE=... [more]
DCN1_CAEEL4.607e-1935.53Defective in cullin neddylation protein 1 OS=Caeno... [more]
DCN1_CAEBR7.355e-1734.48Defective in cullin neddylation protein 1 OS=Caeno... [more]
DCN1_USTMA2.892e-1329.77Defective in cullin neddylation protein 1 OS=Ustil... [more]
DCN1M_DICDI3.777e-1333.55DCN1-like protein 2 OS=Dictyostelium discoideum GN... [more]
DCN1_CRYNE4.933e-1332.00Defective in cullin neddylation protein 1 OS=Crypt... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12G11_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12G11-N22-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069795 ID=CX069795; Name=CX069795; organism=Citrus sinensis; type=EST; length=471bp
ATTACTAACTGATACCAGACATTTGGAGGAGCTTTATAACAGATATAAAG
ATCCATATCTTGATATGATTCTGGTTGACGGTATCACTCTCCTGTGCATT
GACCTTCATGTGGATCCTCAAGATATAGTTATGTTAGTTGTTTCATGGCA
CATGAAAGCTGCTACAATGTGTGAATTCTCAAAGCAGGAGTTCATAGGTG
GATTGCAATCACTAGGGATAGATTCTCTGGATAAGTTCCGTGAAAGGATA
TCATTCATGCGGGCTGAGCTGAAAGATGAACAAAAATTCCGTGAGATATA
CAACTTTGCATTTGCCTGGGCCAAAGAAAAGGGTCAGAAATCTCTGGCAT
TGGACACTGCAATCGGAATGTGGCAATTATTATTTGCTGAGAAGCAGTGG
CCACTAGTTGATCATTGGTGCCAGTTCTTGCAGGCTAAGCATAATAAAGC
AATTCTCAAGGGACACATGGT
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