CX069740

Overview
NameCX069740
Unique NameCX069740
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069740 vs. ExPASy Swiss-Prot
Match: RAB8B_PONAB (Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.424e-36
Identity = 67/135 (49.63%), Postives = 101/135 (74.81%), Query Frame = 3
Query:    3 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDA 407
            + +++DGK++K QIWDTAGQERFR +T+AYYRGA+G ++VYDIT   SF+++K W+  +  H  + V RM++GNKCD++  R VS E G+ LA + G+ F+ETSA  STNVE AF  + R+I + ++RK+ +S++
Sbjct:   48 RTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNS 182          
BLAST of CX069740 vs. ExPASy Swiss-Prot
Match: RAB8B_MOUSE (Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.424e-36
Identity = 67/135 (49.63%), Postives = 101/135 (74.81%), Query Frame = 3
Query:    3 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDA 407
            + +++DGK++K QIWDTAGQERFR +T+AYYRGA+G ++VYDIT   SF+++K W+  +  H  + V RM++GNKCD++  R VS E G+ LA + G+ F+ETSA  STNVE AF  + R+I + ++RK+ +S++
Sbjct:   48 RTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNS 182          
BLAST of CX069740 vs. ExPASy Swiss-Prot
Match: YPT31_YEAST (GTP-binding protein YPT31/YPT8 OS=Saccharomyces cerevisiae GN=YPT31 PE=1 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 4.472e-36
Identity = 73/128 (57.03%), Postives = 94/128 (73.44%), Query Frame = 3
Query:    3 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISR 386
            + ++IDGK +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDI++ SS+ +   WL EL  + D  V   L+GNK DL  +R V TEE K+ A+E  L F ETSAL+S NV+ AFE +I  IY  +S+
Sbjct:   53 RTLEIDGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSK 180          
BLAST of CX069740 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.628e-36
Identity = 76/167 (45.51%), Postives = 106/167 (63.47%), Query Frame = 3
Query:    3 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKV--LNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSCC 497
            ++++IDGK++K QIWDTAGQE FR++T +YYRGA GAL+VYDITRR +FN +  WLE+   H +  +  ML+GNKCDL   R V+TEEG+  A+E GL F+ETSA  + NVE AF    +EIY  I   V  +++++Y  ++           A   +G     S C
Sbjct:   46 RMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSNESYGIKVGYGAGNAGPQAAKPGEGDARKSSSC 212          
BLAST of CX069740 vs. ExPASy Swiss-Prot
Match: RAB2B_HUMAN (Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 9.963e-36
Identity = 78/171 (45.61%), Postives = 111/171 (64.91%), Query Frame = 3
Query:    3 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKV--LNSDAYKAELSVNRVTLVKDGANSSKGSMMDF----SCC 497
            ++V+IDGK++K QIWDTAGQE FR++T +YYRGA GAL+VYDITRR +FN +  WLE+   H  + +  ML+GNK DL+S RDV  EEG++ A E GL FMETSA  + NVE AF    +EIY  I + +  ++++A   ++   +      G ++S+ +  D      CC
Sbjct:   46 RMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGLFDVHNEANGIKIGPQQSISTSVGPSASQRNSRDIGSNSGCC 216          
BLAST of CX069740 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.301e-35
Identity = 66/135 (48.89%), Postives = 100/135 (74.07%), Query Frame = 3
Query:    3 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDA 407
            + +++DGK++K QIWDTAGQERFR +T+AYYRGA+G ++VYDIT   SF+++K W+  +  H  + V RM++GNKCD++  R VS E G+ LA + G+ F+ETSA  S NVE AF  + R+I + ++RK+ +S++
Sbjct:   48 RTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDSNS 182          
BLAST of CX069740 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.899e-35
Identity = 71/132 (53.79%), Postives = 94/132 (71.21%), Query Frame = 3
Query:    3 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLN 398
            ++++IDGK++K QIWDTAGQE FR++T +YYRGA GAL+VYDITRR +FN +  WLE+   H +  +  ML+GNKCDL   R V+TEEG+  A+E GL F+ETSA  + NVE AF    +EIY  I   V +
Sbjct:   46 RMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFD 177          
BLAST of CX069740 vs. ExPASy Swiss-Prot
Match: RAB2B_MOUSE (Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.786e-35
Identity = 71/128 (55.47%), Postives = 93/128 (72.66%), Query Frame = 3
Query:    3 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISR 386
            ++V+IDGK++K QIWDTAGQE FR++T +YYRGA GAL+VYDITRR +FN +  WLE+   H  + +  ML+GNK DL+S RDV  EEG++ A E GL FMETSA  + NVE A+    +EIY  I +
Sbjct:   46 RMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAYINTAKEIYRKIQQ 173          
BLAST of CX069740 vs. ExPASy Swiss-Prot
Match: RAB8B_BOVIN (Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.458e-35
Identity = 65/135 (48.15%), Postives = 99/135 (73.33%), Query Frame = 3
Query:    3 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDA 407
            + +++DGK++K QIWDTAGQERFR +T+AYYRGA+G ++VYDIT   SF+++K W+  +  H  + V RM++GNKCD++  R VS E G+ LA + G+ F+E SA  S NVE AF  + R+I + ++RK+ +S++
Sbjct:   48 RTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLEASAKSSMNVEEAFFTLARDIMTKLNRKMNDSNS 182          
BLAST of CX069740 vs. ExPASy Swiss-Prot
Match: RAB2_LYMST (Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.458e-35
Identity = 75/167 (44.91%), Postives = 105/167 (62.87%), Query Frame = 3
Query:    3 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKV--LNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSCC 497
            +++ IDGK++K QIWDTAGQE FR++T +YYRGA GAL+VYDITRR +FN +  WLE+   H ++ +  ML+GNK DL++ R+V  EEG++ A E GL FMETSA  + NVE AF    +EIY  I   V  +N++A   ++        +       G     +CC
Sbjct:   46 RMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLEARREVKKEEGEAFAREHGLIFMETSAKTAANVEEAFINTAKEIYQKIQDGVFDINNEANGIKIGPQHSPASQSLNVGGSGGNQGGNCC 212          
The following BLAST results are available for this feature:
BLAST of CX069740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB8B_PONAB3.424e-3649.63Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8... [more]
RAB8B_MOUSE3.424e-3649.63Ras-related protein Rab-8B OS=Mus musculus GN=Rab8... [more]
YPT31_YEAST4.472e-3657.03GTP-binding protein YPT31/YPT8 OS=Saccharomyces ce... [more]
YPTV4_VOLCA7.628e-3645.51GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]
RAB2B_HUMAN9.963e-3645.61Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2... [more]
RAB8B_HUMAN1.301e-3548.89Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]
YPTC4_CHLRE2.899e-3553.79GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]
RAB2B_MOUSE3.786e-3555.47Ras-related protein Rab-2B OS=Mus musculus GN=Rab2... [more]
RAB8B_BOVIN6.458e-3548.15Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B ... [more]
RAB2_LYMST6.458e-3544.91Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12E06_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12E06-J12-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069740 ID=CX069740; Name=CX069740; organism=Citrus sinensis; type=EST; length=615bp
CGCAAGTGGTGGATATTGATGGGAAAGAAGTGAAGGCCCAGATCTGGGAC
ACTGCCGGCCAAGAGAGATTTAGAGCTGTTACCTCTGCTTATTACAGGGG
AGCTGTTGGTGCTCTTGTGGTTTATGATATTACCAGGAGAAGCAGCTTCA
ACAGTGTTAAACGCTGGCTTGAGGAGCTCACCACTCACTGTGATACTGCT
GTGGGAAGAATGCTGGTGGGGAACAAGTGTGATTTGGATAGCATTAGAGA
TGTTAGCACAGAGGAGGGCAAAAGCCTTGCGGAGGAAGAAGGATTGTTCT
TCATGGAGACATCAGCTCTTGATTCTACTAATGTTGAAGCTGCTTTTGAG
GTTGTCATCCGAGAAATTTACAGCAATATCAGCAGGAAAGTACTCAACTC
TGATGCATACAAAGCTGAATTGTCTGTCAATCGAGTAACCCTCGTTAAGG
ATGGGGCCAACTCTTCAAAAGGCAGCATGATGGATTTCTCATGCTGTGCT
AAATAAGCTCTAGCTGTTCTTTCATTTATAACACAGGATCCTATCCTTCC
TTGGCGGTACAAATACAAACTGCTTGTGTTGTTTCTAGCTTTCTTCCAAT
TAGAAGACCAAAAAA
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