CX069695

Overview
NameCX069695
Unique NameCX069695
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX069695 vs. ExPASy Swiss-Prot
Match: RS17_MOUSE (40S ribosomal protein S17 OS=Mus musculus GN=Rps17 PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.328e-38
Identity = 77/122 (63.11%), Postives = 100/122 (81.97%), Query Frame = -2 
Query:  304 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 669
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122
[Close]
BLAST of CX069695 vs. ExPASy Swiss-Prot
Match: RS17_ICTPU (40S ribosomal protein S17 OS=Ictalurus punctatus GN=rps17 PE=2 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 1.328e-38
Identity = 77/122 (63.11%), Postives = 100/122 (81.97%), Query Frame = -2 
Query:  304 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 669
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122
[Close]
BLAST of CX069695 vs. ExPASy Swiss-Prot
Match: RS17_HUMAN (40S ribosomal protein S17 OS=Homo sapiens GN=RPS17 PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.328e-38
Identity = 77/122 (63.11%), Postives = 100/122 (81.97%), Query Frame = -2 
Query:  304 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 669
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122
[Close]
BLAST of CX069695 vs. ExPASy Swiss-Prot
Match: RS17_FELCA (40S ribosomal protein S17 OS=Felis catus GN=RPS17 PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.328e-38
Identity = 77/122 (63.11%), Postives = 100/122 (81.97%), Query Frame = -2 
Query:  304 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 669
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122
[Close]
BLAST of CX069695 vs. ExPASy Swiss-Prot
Match: RS17_CRIGR (40S ribosomal protein S17 OS=Cricetulus griseus GN=RPS17 PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.328e-38
Identity = 77/122 (63.11%), Postives = 100/122 (81.97%), Query Frame = -2 
Query:  304 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 669
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122
[Close]
BLAST of CX069695 vs. ExPASy Swiss-Prot
Match: RS17_COTJA (40S ribosomal protein S17 OS=Coturnix coturnix japonica GN=RPS17 PE=2 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 1.328e-38
Identity = 77/122 (63.11%), Postives = 100/122 (81.97%), Query Frame = -2 
Query:  304 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 669
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122
[Close]
BLAST of CX069695 vs. ExPASy Swiss-Prot
Match: RS17_CHICK (40S ribosomal protein S17 OS=Gallus gallus GN=RPS17 PE=2 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 1.328e-38
Identity = 77/122 (63.11%), Postives = 100/122 (81.97%), Query Frame = -2 
Query:  304 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 669
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122
[Close]
BLAST of CX069695 vs. ExPASy Swiss-Prot
Match: RS17_CANFA (40S ribosomal protein S17 OS=Canis familiaris GN=RPS17 PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.328e-38
Identity = 77/122 (63.11%), Postives = 100/122 (81.97%), Query Frame = -2 
Query:  304 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 669
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122
[Close]
BLAST of CX069695 vs. ExPASy Swiss-Prot
Match: RS17A_SCHPO (40S ribosomal protein S17-A OS=Schizosaccharomyces pombe GN=rps17a PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.328e-38
Identity = 77/114 (67.54%), Postives = 96/114 (84.21%), Query Frame = -2 
Query:  328 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDI 669
            MGRVRTKT K++SR VIE+YY R+TLDF TNK+I++EVAII SKRLRNKIAG++THLMKRIQ+GPVRGIS KLQEEERER+  +VP+ S ++ D + VD++T DML +LG   I
Sbjct:    1 MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQI 114
[Close]
BLAST of CX069695 vs. ExPASy Swiss-Prot
Match: RS17_RAT (40S ribosomal protein S17 OS=Rattus norvegicus GN=Rps17 PE=2 SV=3)

HSP 1 Score: 159.073 bits (401), Expect = 2.266e-38
Identity = 77/122 (63.11%), Postives = 99/122 (81.15%), Query Frame = -2 
Query:  304 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 669
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKNLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122
The following BLAST results are available for this feature:
BLAST of CX069695 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS17_MOUSE1.328e-3863.1140S ribosomal protein S17 OS=Mus musculus GN=Rps17... [more]
RS17_ICTPU1.328e-3863.1140S ribosomal protein S17 OS=Ictalurus punctatus G... [more]
RS17_HUMAN1.328e-3863.1140S ribosomal protein S17 OS=Homo sapiens GN=RPS17... [more]
RS17_FELCA1.328e-3863.1140S ribosomal protein S17 OS=Felis catus GN=RPS17 ... [more]
RS17_CRIGR1.328e-3863.1140S ribosomal protein S17 OS=Cricetulus griseus GN... [more]
RS17_COTJA1.328e-3863.1140S ribosomal protein S17 OS=Coturnix coturnix jap... [more]
RS17_CHICK1.328e-3863.1140S ribosomal protein S17 OS=Gallus gallus GN=RPS1... [more]
RS17_CANFA1.328e-3863.1140S ribosomal protein S17 OS=Canis familiaris GN=R... [more]
RS17A_SCHPO1.328e-3867.5440S ribosomal protein S17-A OS=Schizosaccharomyces... [more]
RS17_RAT2.266e-3863.1140S ribosomal protein S17 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12C03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12C03-F6-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069695 ID=CX069695; Name=CX069695; organism=Citrus sinensis; type=EST; length=727bp
TTTTTGCAAAACTAATATGCATTATAACTTCAGTAAGTTGCATCCCAGTA
AAACAAATAAAATGAAAAGACAAAACAAGTCCATTAAATCAACTAAAGTA
TGATGCCAGAGTTCAAGTTTTAACTAAACACCCTTCTTAAAATAGTAAAG
AAAACTAGTCACAAAAGCATTCATAACAAACACAAGAAGTACTGATTAAT
AAGAACCTAAACTTCTCATTCTTGATTGAGCCACAAAGCCTCAATTAACT
CAGTACCTCCTGCCACCACCCCGACCAAAAACTGGAGGAGCAATCATGCT
CTGTGGCTCAACTTCAACAAGCCCAGAAATGTCAGACATGCCAAGAGCAG
CAAGCATATCCAAGGTTTCCTTGTCAACCTTAATTTCATCAGTCTTAATA
GCTGACTCATCAGGCACAAAGTCCATGCGGCGTTCGCGCTCCTCTTCCTG
CAATTTAAGGGAGATTCCACGAACTGGACCCTTCTGAATCCTCTTCATCA
AATGGGTTGAGAACCCAGCAATTTTGTTACGCAGCCTCTTCGAGGGGATG
ATAGCAACCTCCTCCAAAATCTTCTTGTTGGTATGGAAGTCCAGTGTCAT
TCTTGAGTAGTACCTCTCAATCACCTGGCGAGAGGACTTCTTCACGGTCT
TGGTACGAACACGACCCATTTCAGTTTAAGAAGCTGCTGCTGCTGCTGCA
AATAGGGAAAAAGTTTCTTTCAAACAG
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