DR403957

Overview
NameDR403957
Unique NameDR403957
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403957 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.567e-23
Identity = 63/167 (37.72%), Postives = 90/167 (53.89%), Query Frame = 1
Query:  181 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPS-DYCDPN---YPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMTAQPP 663
            +G I+++  F+ ++       C  + FYT D+FI AA  FP F NS    + +REIA  FA   HET               +C+I E++  S DYCD N   YPC  GK Y+GRGPIQLSWNYNY  C             P+L++++P ++F++ +W WM +  P
Sbjct:   72 VGSIVTQAFFNGIINQAGGG-CAGKNFYTRDSFINAANTFPNFANS----VTRREIATMFAHFTHET-------------GHFCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGAC--GQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVRP 218          
BLAST of DR403957 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.946e-23
Identity = 63/180 (35.00%), Postives = 92/180 (51.11%), Query Frame = 1
Query:  202 EMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPS-DYCDPN---YPCR--GKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMTAQPPKPSCHEVIIDEWKPSANDVN 723
            E F + ++ +    C  + FYT  +F+ AA ++ GF         KREIAAFFA   HET                C+I+E++  S DYCD N   +PC+   KYYGRGP+Q+SWNYNY               +PD +A DP +SFK+A+W WM       + H+V++  +  +   +N
Sbjct:   93 EAFFNGIKNQAPNGCAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFFAHVTHET-------------GHMCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNY--GPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWMN------NVHQVMLQGFGATIRAIN 251          
BLAST of DR403957 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.355e-22
Identity = 67/162 (41.36%), Postives = 81/162 (50.00%), Query Frame = 1
Query:  190 IISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPP--SDYCDPN----YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMT 651
            I+S+  FD ++  +    CP + FYT  AF+ A    P FGN G+    KREIAAFFA   HETT               C I E        YCD +    YPC    KYYGRGP+QLSWNYNY               NP+ +ATD   SFK+A+W WMT
Sbjct:   90 IVSQAFFDGIIG-QAAASCPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFFAHISHETTN-------------LCHIEERDGDVGDAYCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNY--ALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMT 233          
BLAST of DR403957 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 6.726e-22
Identity = 58/155 (37.42%), Postives = 84/155 (54.19%), Query Frame = 1
Query:  202 EMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPS-DYCDPN---YPCR--GKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWM 648
            E F + ++ +    C  + FYT  +F+ AA+++ GF N       KREIAAFFA   HET                C+I+E++  + DYCD +   +PC+   KYYGRGP+Q+SWN+NY               +PD +A DP +SFK+A+W WM
Sbjct:   90 EAFFNGIKNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHET-------------GHMCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNY--GPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWM 229          
BLAST of DR403957 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.713e-21
Identity = 59/160 (36.88%), Postives = 83/160 (51.88%), Query Frame = 1
Query:  190 IISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPS-DYCD----PNYPCRGK--YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWM 648
            I++ +  + +++ + D  C  + FYT DAF+ A  ++  FG  G+E   KREIAA FA   HET               +C+I E+   S DYCD      YPC     Y+GRGPIQLSWN+NY                P+ ++ D V+SFK+A+W WM
Sbjct:   71 ILTADFLNGIID-QADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHET-------------GHFCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNY--GPAGSANNFDGLGAPETVSNDVVVSFKTALWYWM 214          
The following BLAST results are available for this feature:
BLAST of DR403957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI4_BRANA3.567e-2337.72Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHI5_ORYSJ7.946e-2335.00Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIP_BETVU1.355e-2241.36Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHI4_ORYSJ6.726e-2237.42Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_PHAVU9.713e-2136.88Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246N03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246N03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403957 ID=DR403957; Name=DR403957; organism=Citrus sinensis; type=EST; length=733bp
GGGGACACCAAGCAGAGGATAATTGATATCATAACTGTTGCTTTCAAAAT
GAGGCTTATTGGGTCCTTACTAATTTTCTCTCTAGTTTTATCTTTTGTAC
TAGGAGGCTCAGCACAGAACTGTGGAAGCGGCGTTGTGTACGGTGGACGT
GATACCGGCCATGGGACGCATGGCGGTGAACTGGGCAAGATCATCTCAAG
GGAGATGTTTGATGACTTGCTTGAGTATAGAAATGATGAACGATGCCCTG
CCAGAGGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCCAAGCTTTT
CCAGGCTTTGGTAACTCTGGAAATGAAACCATGCGTAAAAGAGAAATCGC
TGCCTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCCCGATG
CACCTGGTGGCGAATATGCTTGGGGATATTGCTTTATAAGCGAAGTTAGC
CCTCCGTCCGACTACTGTGATCCTAACTATCCATGTCGAGGGAAGTACTA
TGGCCGAGGTCCAATTCAACTCTCTTGGAATTACAATTACTTACGGTGCG
GAGAAGGCCTAGGGCTAGGAGAGGAGTTGTTGAACAATCCAGACCTTCTT
GCTACTGATCCAGTACTATCATTCAAGTCAGCAATCTGGTCCTGGATGAC
TGCACAGCCACCAAAGCCATCGTGCCACGAAGTCATTATCGACGAATGGA
AACCATCAGCAAATGACGTAAACGCCGGCCGGC
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