DR403956

Overview
NameDR403956
Unique NameDR403956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403956 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.917e-30
Identity = 83/193 (43.01%), Postives = 106/193 (54.92%), Query Frame = 3
Query:  192 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQRSMEK------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 725
            P YL G  PGD+G+D   L   PE   + +E E+IH RWAML   G + PE L       G   W +A       GG   YLGNP  V   ++ +I   + + +  VE  R          DP    YPGG+FDPLG ++DP++  E KVKE+KNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:   65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGPLGEIVDP---LYPGGSFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 252          
BLAST of DR403956 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.034e-30
Identity = 79/191 (41.36%), Postives = 103/191 (53.93%), Query Frame = 3
Query:  192 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR---SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 725
            P YL G  PGD+G+D   L   PE  ++Y+E E+IH RWA+L   GIL PE L        G   W +A       GG   YLG+P  +    +   L ++ + +  +E  R       +     YPG +FDPLG + DP  F E KVKEIKNGRLA+ +  GF V Q+   G GP++NLA HLADP  NN
Sbjct:   56 PAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGG-LDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFV-QAIVTGKGPIQNLADHLADPGTNN 244          
BLAST of DR403956 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.180e-29
Identity = 83/196 (42.35%), Postives = 102/196 (52.04%), Query Frame = 3
Query:  183 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 725
            E  P YL G  PGD+G+D   L   PE   R +E E+IH RWAML   G   PE L       G   W +A       GG   YLGNP  +   ++  I   + + + FVE  R          DP    YPGGAFDPLG + DP  F E KVKE+KNGRLA+ +  GF V Q+   G GP++NL  H+ADP  NN
Sbjct:   63 EQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGG-LDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDP---LYPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIQNLYDHVADPVANN 253          
BLAST of DR403956 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.013e-29
Identity = 80/192 (41.67%), Postives = 101/192 (52.60%), Query Frame = 3
Query:  192 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQRSME-----KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 722
            P YL G  PGD+G+D   L   P+   RY+E ELIH RWA+L   GIL PE L        G   W +A       GG   YLGN   +   ++   L ++ + +   E  R+        D     YPGG FDPLG + DP  F E KVKEIKNGRLA+ + +GF V Q+   G GP++NL  HLADP  N
Sbjct:   51 PEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGG-LNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFV-QAIVTGKGPVQNLTDHLADPTVN 240          
BLAST of DR403956 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.013e-29
Identity = 94/256 (36.72%), Postives = 124/256 (48.44%), Query Frame = 3
Query:    3 GPSHSSPKMASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 725
            G   SS K  +N L+  G A       +  +  +   A S+ +      +  M      GEP P YL G  PGD+G+D   L   PE   + +E E+IH RWAML   G + PE L       G   W +A       GG   YLG+P  +   ++  I   + + +  +E  R          DP    YPGG FDPLG + DP  F + KVKEIKNGRLA+ +  GF V Q+   G GP+ENLA HLADP +NN
Sbjct:   18 GAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGRKSVAASIDSPWYGPDR-VMYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPI---YPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLADHLADPVNNN 266          
BLAST of DR403956 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.013e-29
Identity = 84/197 (42.64%), Postives = 106/197 (53.81%), Query Frame = 3
Query:  180 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 725
            GEP P YL G  PGD+G+D   L   PE   + +E E+IH RWAML   G + PE L       G  +W +A       GG   YLGN   +   ++  I   + + +  VE  R          DP    YPGG+FDPL  + DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLA+P +NN
Sbjct:   43 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGG-LDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLAEPVNNN 233          
BLAST of DR403956 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.629e-29
Identity = 85/193 (44.04%), Postives = 101/193 (52.33%), Query Frame = 3
Query:  192 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 725
            P YL+G   GD+G+D   L   PE   R +E E+IH RWAML   G L PE L       G   W +A       GG   YLGNP  V   ++  I   + + +  VE  R          DP    YPGG+FDPLG + DP  F E KVKEIKNGRLA+ +  GF V Q+   G GPLENL  HLADP  NN
Sbjct:   69 PSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPI---YPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLNDHLADPVANN 256          
BLAST of DR403956 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.648e-29
Identity = 100/258 (38.76%), Postives = 127/258 (49.22%), Query Frame = 3
Query:   30 ASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADW-----------MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 725
            A+  L S   A  A  ++ SSS+ +    VS+   A AT K  + + W             GE  P YL G  PGD+G+D   L   PE   + +E E+IH RWAML   G + PE L       G   W +        GG   YLGNP  V   ++  I   + + +  VE  R          DP    YPGG+FDPLG + D + F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:    4 ATMALSSSTFAGKAVKNLSSSSEVQGDARVSMRKTA-ATKK--VGSPWYGPDRVKYLGPFSGES-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGG-LQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSFDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 252          
BLAST of DR403956 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.648e-29
Identity = 81/193 (41.97%), Postives = 102/193 (52.85%), Query Frame = 3
Query:  192 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQRSMEK------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 725
            P YL G  PGD+G+D   L   P    + ++ E+IHCRW ML   G + PE         G   W +A       GG   YLGNP  V   ++  I   + + +  VE  R          DP    YPGG+FDPLG + DP+ F E +VKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDP---LYPGGSFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 254          
BLAST of DR403956 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.988e-29
Identity = 82/193 (42.49%), Postives = 103/193 (53.37%), Query Frame = 3
Query:  192 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 725
            P YL G  PGD+G+D   L   PE   + +E E+IH RWAML   G + PE L       G   W +A       GG   YLGNP  V   ++  I   + + +  VE  R          DP    YPGG+FDPLG ++ P+ F E KVKE+KNGRLA+ +  GF V  +   G GPLENLA HLADP +NN
Sbjct:   29 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFV-PAIVTGKGPLENLADHLADPVNNN 216          
The following BLAST results are available for this feature:
BLAST of DR403956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
CB23_APIGR6.917e-3043.01Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2_CHLMO9.034e-3041.36Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB215_PEA1.180e-2942.35Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB2_DUNTE2.013e-2941.67Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2A_PYRPY2.013e-2936.72Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_SOYBN2.013e-2942.64Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB2_PHYPA2.629e-2944.04Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_HORVU7.648e-2938.76Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_PETSP7.648e-2941.97Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB21_PEA9.988e-2942.49Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246N02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246N02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403956 ID=DR403956; Name=DR403956; organism=Citrus sinensis; type=EST; length=746bp
GGGGACCCTCACACAGCTCTCCCAAAATGGCTTCCAACACTCTGATGAGC
TGCGGCATCGCCACCACCGCTTTCCCTTCGGTCCTCTCATCTTCTAAATC
CAAATTCTTTACTGCAGTTTCACTTCCAGCTGCCGCCAATGCAACCTCGA
AATACGCCATGTCTGCTGACTGGATGCCCGGCGAGCCCCGGCCGCCTTAT
CTTGATGGTTCAGCCCCAGGGGACTTTGGATTTGACCCACTTCGGCTTGG
CGAAGTTCCTGAGAACCTTGAGAGATACAAGGAGTCTGAACTCATTCACT
GCAGATGGGCTATGCTTGCTGTTCCAGGGATCTTGGTGCCAGAGGCATTG
GGATTGGGCAACTGGGTGCAGGCGCAAGAGTGGGCAGCAGTTCCTGGAGG
ACAAGCCACATACTTAGGCAACCCTGTTCCATGGGGCACTCTCCCCACAA
TTTTGGTGATTGAATTCCTTTCCATTGCCTTCGTTGAGCACCAACGCAGC
ATGGAGAAAGACCCCGAGAAGAAGAAGTACCCCGGTGGTGCTTTCGACCC
CTTGGGCTTCTCCAAGGACCCCCAGAAGTTCGAGGAATACAAAGTCAAGG
AGATAAAAAATGGGCGTTTGGCATTGTTGGCATTTGTGGGTTTCTGCGTG
CAACAATCAGCATATCCGGGCACAGGACCATTGGAGAACTTGGCAACTCA
CTTGGCTGATCCATGGCACAACAACATTGGGGGACGTTATTATCCC
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