CX069640

Overview
NameCX069640
Unique NameCX069640
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069640 vs. ExPASy Swiss-Prot
Match: RL11_METJA (50S ribosomal protein L11P OS=Methanocaldococcus jannaschii GN=rpl11p PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.478e-20
Identity = 57/148 (38.51%), Postives = 88/148 (59.46%), Query Frame = -1
Query:  270 VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 704
            V VTGG   A   L P IGPLG++  ++ ++I ++T KD++G++V VK+ V     K  +   +P   AL+ K L       +    +   GN+TL+ VI+IA + +   ++  L   VKE+LGTC S+G TV+GKDPK++Q+EI  G
Sbjct:    8 VLVTGGRATAGPPLGPAIGPLGVNVMQVVKEINEKT-KDYEGMQVPVKVIVDTETRKFEIEVGIPPTTALIKKELGIETAAHEPRHEVV--GNLTLEQVIKIAKMKKDAMLSYTLKNAVKEVLGTCGSMGVTVEGKDPKEVQKEIDAG 152          
BLAST of CX069640 vs. ExPASy Swiss-Prot
Match: RL11_PYRKO (50S ribosomal protein L11P OS=Pyrococcus kodakaraensis GN=rpl11p PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.945e-19
Identity = 55/151 (36.42%), Postives = 92/151 (60.93%), Query Frame = -1
Query:  270 VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKV----AVVPSAAALVIKALKEPERDRKKTKNIKHN--GNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 704
            V V GG+      L P IGPLGL+ K++ ++I K T K+++G++V VK+ V++ + K       +P  + L+ K L  P    K +    H   GN+T++ VI+IA +   + +A +L    KE++GT +S+G TV+GKDP+++Q+EI +G
Sbjct:    7 VLVEGGKASPGPPLGPAIGPLGLNVKQVVDEINKAT-KEFEGMQVPVKIIVEDPKKKTFRIEVGIPPTSQLIKKELGIP----KGSSEAGHTPAGNLTMEQVIKIAKMKIDQMLAPNLKAAAKEVIGTALSMGVTVEGKDPREVQREIDEG 152          
BLAST of CX069640 vs. ExPASy Swiss-Prot
Match: RL11_PYRFU (50S ribosomal protein L11P OS=Pyrococcus furiosus GN=rpl11p PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.846e-19
Identity = 58/150 (38.67%), Postives = 91/150 (60.67%), Query Frame = -1
Query:  270 VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQ--NRQAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHN--GNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 704
            V V GG+      L P IGPLGL+ K++ + I  E  KD+ G++V VK+ V    +Q ++ V VP  + L+ K L       K +   KHN  GN+T++ VI+IA + + + +A  L    KE++GT +S+G TV+GKDP+++Q+EI +G
Sbjct:    8 VLVEGGKATPGPPLGPAIGPLGLNVKQVVDKI-NEATKDFAGMQVPVKIIVDPVTKQFEIEVGVPPTSQLIKKELGL----EKGSGEPKHNIVGNLTMEQVIKIAKMKKDQMLALTLKAAAKEVIGTALSMGVTVEGKDPREVQKEIDEG 152          
BLAST of CX069640 vs. ExPASy Swiss-Prot
Match: RL11_PYRAB (50S ribosomal protein L11P OS=Pyrococcus abyssi GN=rpl11p PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.560e-19
Identity = 58/150 (38.67%), Postives = 91/150 (60.67%), Query Frame = -1
Query:  270 VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQ--NRQAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHN--GNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 704
            V V GG+      L P IGPLGL+ K++ + I  E  K++ G++V VK+ V    +Q ++ V VP  + L+ K L       K +   KHN  GN+T++ VI+IA + R + +A  L    KE++GT +S+G TV+GKDP+++Q+EI +G
Sbjct:    8 VLVEGGKATPGPPLGPAIGPLGLNVKQVVDKI-NEATKEFAGMQVPVKIIVDPVTKQFEIEVGVPPTSQLIKKELGL----EKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAAKEVIGTALSMGVTVEGKDPREVQREIDEG 152          
BLAST of CX069640 vs. ExPASy Swiss-Prot
Match: RL11_THEGJ (50S ribosomal protein L11P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.119e-18
Identity = 53/149 (35.57%), Postives = 91/149 (61.07%), Query Frame = -1
Query:  270 VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKV----AVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 704
            V V GG+      L P IGPLGL+ K++ ++I K T K+++G++V VK+ V++ + K       +P  + L+ K L  P+   +   +    GN+T++ VI+IA +   + +A  L    KE++GT +S+G TV+GKDP+++Q+EI +G
Sbjct:    7 VLVEGGKASPGPPLGPAIGPLGLNVKQVVDEINKAT-KEFEGMQVPVKIIVEDPKKKTFRIEVGIPPTSQLIKKELGIPKGSSEPVHSPV--GNLTMEQVIKIAKMKIDQMLAPTLKAASKEVIGTALSMGVTVEGKDPREVQREIDEG 152          
BLAST of CX069640 vs. ExPASy Swiss-Prot
Match: RL11_THEVO (50S ribosomal protein L11P OS=Thermoplasma volcanium GN=rpl11p PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.461e-18
Identity = 54/151 (35.76%), Postives = 90/151 (59.60%), Query Frame = -1
Query:  258 VTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAK----VAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEI 698
            V GG+      + P +GPLGL+  ++ ++I ++T K+++G++V V +TV + + K       VP  +AL+ K L   +   KK + +   GN TL+ +  +A    P  +AKDL   V E+LGTCV++G  V+GKDPK++Q+ I  G ++I
Sbjct:    9 VEGGKATTGPPIGPALGPLGLNVAQVVKEINEKT-KEFQGMQVPVTVTVIDPETKKYEITVGVPPTSALLKKELGLEKGASKKKEAVA--GNATLEQIKNVAIKKMPSMLAKDLKSAVLEVLGTCVAMGINVEGKDPKEVQKLIKSGQIKI 156          
BLAST of CX069640 vs. ExPASy Swiss-Prot
Match: RL11_HYPBU (50S ribosomal protein L11P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.461e-18
Identity = 60/150 (40.00%), Postives = 82/150 (54.67%), Query Frame = -1
Query:  270 VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVV---PSAAALVIKAL--KEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 704
            V+V GGE   A  LAP I  LGL   K+ EDI K T K +KG  V VKL V     +  +    P+   L++KA+   EP  D    K     G++  + ++EIA + +P   AK L   VK ILG+  S+G TVDGKDPK + +E+ +G
Sbjct:    8 VKVRGGEAKPAPPLAPAIEKLGLDVNKVVEDINKATEK-YKGFEVAVKLIVDENTKEYEIEVKPPTTTELLLKAVGASEPSGDPMHQKI----GDLPFEKIVEIAILKKPSLNAKTLKAAVKTILGSARSIGITVDGKDPKQVTKEVEEG 152          
BLAST of CX069640 vs. ExPASy Swiss-Prot
Match: RL11_PYRHO (50S ribosomal protein L11P OS=Pyrococcus horikoshii GN=rpl11p PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.909e-18
Identity = 58/150 (38.67%), Postives = 90/150 (60.00%), Query Frame = -1
Query:  270 VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQ--NRQAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHN--GNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 704
            V V GG+      L P IGPLGL+ K++ + I  E  K++ G++V VK+ V    +Q ++ V VP  + L+ K L       K +   KHN  GN+T++ VI+IA + R + +A  L    KE++GT +S+G TV+GKDP+ +Q+EI +G
Sbjct:    8 VLVEGGKATPGPPLGPAIGPLGLNVKQVVDKI-NEATKEFAGMQVPVKIIVDPVTKQFEIEVGVPPTSQLIKKELGL----EKGSGEPKHNIVGNLTMEQVIKIAKMKRSQMLALTLKAAAKEVIGTALSMGVTVEGKDPRIVQREIDEG 152          
BLAST of CX069640 vs. ExPASy Swiss-Prot
Match: RL11_METVS (50S ribosomal protein L11P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18
Identity = 52/151 (34.44%), Postives = 88/151 (58.28%), Query Frame = -1
Query:  261 VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVE 704
            + VTGG+  A   L P IGPLG++  ++ + I  +T KD++G+ V VK+ V+  +    V   +P A+AL+ K L      ++    +   GNIT++ +++IA + +   +A  L    KE++GTCVSVG  V+GK PK+ Q+ +  G+ +
Sbjct:    8 ILVTGGKATAGPPLGPAIGPLGVNIMQVVQMINTKT-KDYEGMSVPVKVIVETTKRTFEVEVGIPPASALIKKELGLESGSQEPKHKVA--GNITMEKIVKIAKMKQDAMLAYTLKSAAKEVIGTCVSVGVNVEGKTPKEAQKAVDAGEFD 155          
BLAST of CX069640 vs. ExPASy Swiss-Prot
Match: RL11_METKA (50S ribosomal protein L11P OS=Methanopyrus kandleri GN=rpl11p PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.553e-18
Identity = 52/147 (35.37%), Postives = 93/147 (63.27%), Query Frame = -1
Query:  270 VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTV--QNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 704
            V + GG+      L P +GPLG++ +++ E+I ++T KD+KG+ V VK+ V  + R+ +V V     + +IK+    ++   + ++ +  G+++++ VI+IA +     ++ DL    KEILGTC S+G TV+GKDPK++Q+EI +G
Sbjct:    8 VLIEGGKADPGPPLGPALGPLGVNIQEVVEEINRKT-KDFKGMEVPVKIIVDTETREFEVKVGSPPTSAIIKSELGIDKGAHEPRH-ETVGDLSMEQVIKIAKMKFDDLLSYDLKTAAKEILGTCGSMGVTVEGKDPKEVQKEIDEG 152          
The following BLAST results are available for this feature:
BLAST of CX069640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
RL11_METJA3.478e-2038.5150S ribosomal protein L11P OS=Methanocaldococcus j... [more]
RL11_PYRKO2.945e-1936.4250S ribosomal protein L11P OS=Pyrococcus kodakarae... [more]
RL11_PYRFU3.846e-1938.6750S ribosomal protein L11P OS=Pyrococcus furiosus ... [more]
RL11_PYRAB6.560e-1938.6750S ribosomal protein L11P OS=Pyrococcus abyssi GN... [more]
RL11_THEGJ1.119e-1835.5750S ribosomal protein L11P OS=Thermococcus gammato... [more]
RL11_THEVO1.461e-1835.7650S ribosomal protein L11P OS=Thermoplasma volcani... [more]
RL11_HYPBU1.461e-1840.0050S ribosomal protein L11P OS=Hyperthermus butylic... [more]
RL11_PYRHO1.909e-1838.6750S ribosomal protein L11P OS=Pyrococcus horikoshi... [more]
RL11_METVS3.256e-1834.4450S ribosomal protein L11P OS=Methanococcus vannie... [more]
RL11_METKA5.553e-1835.3750S ribosomal protein L11P OS=Methanopyrus kandler... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11H06_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11H06-P11-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069640 ID=CX069640; Name=CX069640; organism=Citrus sinensis; type=EST; length=707bp
GAAAATTTAAATTTCAAAGATCCAATATACGTTTTCTGAAGCATCATTCA
ACATAAGTCCACTAAATTAAACCTTACATCTCCTAAATTCCAATAATAAA
GCACTCGTTTAAAGCTCGAATAATTGGAGACATCATCAAAATCCTTGTAA
AGATCCAAAACTGATAATAAAAAAAAAGGCACTGATATATAGAAATAAAA
AACAAAAATTAAAATCTAAAATAGACCCCCTCACAAACAGAGTCTTCAAT
CAAGAGGAATTTCGACATCACCATCAGTGATCTCCTGCTGCAGGTCCTTA
GGGTCCTTGCCATCGACCGTACACCCAACAGAAACGCATGTGCCCAAAAT
CTCCTTAACGGTGCCACTCAAATCCTTAGCCATCGACCTGGGCCGCATCA
CATTTGCGATTTCGATGACGTCATCGAGGGTAATGTTGCCGTTGTGCTTG
ATGTTCTTGGTCTTCTTCCTGTCCCTCTCGGGTTCCTTGAGGGCTTTAAT
GACCAGGGCGGCGGCGGAGGGAACGACGGCGACCTTGGCCTGACGGTTCT
GGACGGTGAGCTTGACGGTGACACGTAAGCCCTTCCAGTCCTTGGCGGTT
TCCTTGGCGATGTCCTCTCCGATTTTCTTGGGGGAGAGACCGAGGGGACC
GATCTTTGGGGCGAGGGAACTGGCGGCTCCCACCTCGCCACCGGTCACGC
GGACGTA
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