DR403945

Overview
NameDR403945
Unique NameDR403945
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403945 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.777e-33
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 1
Query:  502 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLA 714
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLA
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLA 222          
BLAST of DR403945 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.777e-33
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 1
Query:  502 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLA 714
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLA
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLA 222          
BLAST of DR403945 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.777e-33
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 1
Query:  502 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLA 714
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLA
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLA 71          
BLAST of DR403945 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.777e-33
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 1
Query:  502 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLA 714
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLA
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLA 220          
BLAST of DR403945 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.777e-33
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 1
Query:  502 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLA 714
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLA
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLA 220          
BLAST of DR403945 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.433e-31
Identity = 67/79 (84.81%), Postives = 70/79 (88.61%), Query Frame = 1
Query:  481 LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLA 714
            LDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE  D LYPGGSFDPL    DPEAFAELKVKEIKNGRLA
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLA 79          
BLAST of DR403945 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.804e-24
Identity = 78/209 (37.32%), Postives = 102/209 (48.80%), Query Frame = 1
Query:   94 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLA 714
            VG    LAPS     +G       T S  V+  + W           F G+P P++L G  PGD+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A + + +   E  R       +     YPGG+FDPLG + DP  F ELK+KEIKNGRLA
Sbjct:   13 VGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTME---KDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLA 198          
BLAST of DR403945 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.994e-23
Identity = 69/160 (43.12%), Postives = 86/160 (53.75%), Query Frame = 1
Query:  241 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLA 714
            G+P PSYL G  PGD+G+D+ GL   P    + +E E+IHCRWAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A + + +  VE  R       +     YPGG+FDPLG + DP  F ELKVKEIKNGRLA
Sbjct:   52 GQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLA 199          
BLAST of DR403945 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.402e-23
Identity = 70/177 (39.55%), Postives = 93/177 (52.54%), Query Frame = 1
Query:  208 PDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGL-ADDPEAFAELKVKEIKNGRLA 714
            PDR  +   F G  PP +L G  PGD+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDPLG  +  P    EL+ KEIKNGRLA
Sbjct:   63 PDRPLW---FPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLA 229          
BLAST of DR403945 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.898e-23
Identity = 73/190 (38.42%), Postives = 96/190 (50.53%), Query Frame = 1
Query:  169 GSKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGL-ADDPEAFAELKVKEIKNGRLA 714
            GS+SV+  +    PDR  +   F G  PP +L G  PGD+G+D  GL +DPE+   N + E++H RWAMLGA G   PE L + GV      W+ AG Q +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDPLG  +  P    EL+ KEIKNGRLA
Sbjct:   50 GSRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLA 229          
The following BLAST results are available for this feature:
BLAST of DR403945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
CB2F_SOLLC2.777e-3395.77Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC2.777e-3395.77Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC2.777e-3395.77Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC2.777e-3395.77Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC2.777e-3395.77Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_RAPSA4.433e-3184.81Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB121_HORVU1.804e-2437.32Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC1.994e-2343.13Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB12_SOLLC3.402e-2339.55Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY9.898e-2338.42Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246M10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246M10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403945 ID=DR403945; Name=DR403945; organism=Citrus sinensis; type=EST; length=716bp
GGGGACCCAACAGCTTCTCTTGCTTGCACAACTTCTGCTTCTCCATTAAA
TTCTGCAATGGCAACCTCAACAATGGCTCTCTCCTCATCATTCGTCGGCA
AGGCTGTGAACCTTGCCCCTTCAGGCAATGAGCTAAGCAATGGTGGCCGC
ATCTCCATGCGTAAAACCGGGAGCAAATCTGTTTCTTCAGGTAGCCCGTG
GTACGGCCCGGACAGAGTCAAGTACTTGGGCCCATTCTCTGGCGAGCCCC
CAAGCTACTTGACCGGTGAGTTCCCTGGCGACTACGGTTGGGACACAGCC
GGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGT
CATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGG
AGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTGGTTCAAG
GCGGGAGCTCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGAAACCC
AAGCTTGATCCACGCCCAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGG
TCTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGT
GAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTTT
GGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGA
ATGGAAGGTTGGCTAT
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