CX069623

Overview
NameCX069623
Unique NameCX069623
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069623 vs. ExPASy Swiss-Prot
Match: NQO4_PARDE (NADH-quinone oxidoreductase subunit 4 OS=Paracoccus denitrificans GN=nqo4 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.202e-13
Identity = 36/56 (64.29%), Postives = 43/56 (76.79%), Query Frame = 2
Query:  422 TRNGQIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSR 589
            T    I+NF  NFGPQHPAAHG+ R VLE++GE+VERA+PHIGLL  GT+ L  SR
Sbjct:   19 TGEQSIRNFNINFGPQHPAAHGLLRMVLELDGEIVERADPHIGLLHRGTEKLMESR 74          
BLAST of CX069623 vs. ExPASy Swiss-Prot
Match: NUOD_SILST (NADH-quinone oxidoreductase subunit D OS=Silicibacter sp. (strain TM1040) GN=nuoD PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.570e-13
Identity = 36/56 (64.29%), Postives = 43/56 (76.79%), Query Frame = 2
Query:  422 TRNGQIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSR 589
            T   +I+NF  NFGPQHPAAHGV R VLE++GE+VER +PHIGLL  GT+ L  SR
Sbjct:   11 TGEQKIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESR 66          
BLAST of CX069623 vs. ExPASy Swiss-Prot
Match: NUOD_ROSDO (NADH-quinone oxidoreductase subunit D OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=nuoD PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.570e-13
Identity = 36/56 (64.29%), Postives = 43/56 (76.79%), Query Frame = 2
Query:  422 TRNGQIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSR 589
            T   +I+NF  NFGPQHPAAHGV R VLE++GE+VER +PHIGLL  GT+ L  SR
Sbjct:   13 TGEQKIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESR 68          
BLAST of CX069623 vs. ExPASy Swiss-Prot
Match: NUOD_RHOPB (NADH-quinone oxidoreductase subunit D OS=Rhodopseudomonas palustris (strain BisB18) GN=nuoD PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.570e-13
Identity = 34/53 (64.15%), Postives = 43/53 (81.13%), Query Frame = 2
Query:  431 GQIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSR 589
            G ++NFT NFGPQHPAAHGV R VLE++GE+VER +PHIGLL  GT+ L  ++
Sbjct:    4 GALRNFTINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIEAK 56          
BLAST of CX069623 vs. ExPASy Swiss-Prot
Match: NUOD_RHOP5 (NADH-quinone oxidoreductase subunit D OS=Rhodopseudomonas palustris (strain BisA53) GN=nuoD PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.570e-13
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 2
Query:  431 GQIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPL 577
            G ++NFT NFGPQHPAAHGV R VLE++GEVVER +PHIGLL  GT+ L
Sbjct:    4 GALRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKL 52          
BLAST of CX069623 vs. ExPASy Swiss-Prot
Match: NUOD_DINSH (NADH-quinone oxidoreductase subunit D OS=Dinoroseobacter shibae (strain DFL 12) GN=nuoD PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.570e-13
Identity = 36/56 (64.29%), Postives = 43/56 (76.79%), Query Frame = 2
Query:  422 TRNGQIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSR 589
            T   +I+NF  NFGPQHPAAHGV R VLE++GE+VER +PHIGLL  GT+ L  SR
Sbjct:   12 TGEQKIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESR 67          
BLAST of CX069623 vs. ExPASy Swiss-Prot
Match: NUOD_ANAMM (NADH-quinone oxidoreductase subunit D OS=Anaplasma marginale (strain St. Maries) GN=nuoD PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.570e-13
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 2
Query:  413 PMT-TRNGQIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPL 577
            PM+ TR+ +IK  T NFGPQHPAAHGV R +LEM+GEV+ER +PHIGLL  GT+ L
Sbjct:    3 PMSDTRSSRIKPMTLNFGPQHPAAHGVMRLILEMSGEVIERIDPHIGLLHRGTEKL 58          
BLAST of CX069623 vs. ExPASy Swiss-Prot
Match: NUOD_NITOC (NADH-quinone oxidoreductase subunit D OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=nuoD PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.051e-13
Identity = 33/52 (63.46%), Postives = 43/52 (82.69%), Query Frame = 2
Query:  434 QIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSR 589
            +I+NFT NFGPQHPAAHGV R VLEM+GE+++RA+PH+GLL   T+ L  S+
Sbjct:    3 EIRNFTLNFGPQHPAAHGVLRLVLEMDGEIIQRADPHVGLLHRATEKLAESK 54          
BLAST of CX069623 vs. ExPASy Swiss-Prot
Match: NUOD_BRASO (NADH-quinone oxidoreductase subunit D OS=Bradyrhizobium sp. (strain ORS278) GN=nuoD PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.051e-13
Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 2
Query:  416 MTTRNGQIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSR 589
            M  ++  ++NFT NFGPQHPAAHGV R VLE++GEVVER +PHIGLL  GT+ L  ++
Sbjct:    1 MNEQSPALRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIETK 58          
BLAST of CX069623 vs. ExPASy Swiss-Prot
Match: NUOD_BRASB (NADH-quinone oxidoreductase subunit D OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=nuoD PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.051e-13
Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 2
Query:  416 MTTRNGQIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSR 589
            M  ++  ++NFT NFGPQHPAAHGV R VLE++GEVVER +PHIGLL  GT+ L  ++
Sbjct:    1 MNEQSPALRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIETK 58          
The following BLAST results are available for this feature:
BLAST of CX069623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
NQO4_PARDE1.202e-1364.29NADH-quinone oxidoreductase subunit 4 OS=Paracoccu... [more]
NUOD_SILST1.570e-1364.29NADH-quinone oxidoreductase subunit D OS=Silicibac... [more]
NUOD_ROSDO1.570e-1364.29NADH-quinone oxidoreductase subunit D OS=Roseobact... [more]
NUOD_RHOPB1.570e-1364.15NADH-quinone oxidoreductase subunit D OS=Rhodopseu... [more]
NUOD_RHOP51.570e-1371.43NADH-quinone oxidoreductase subunit D OS=Rhodopseu... [more]
NUOD_DINSH1.570e-1364.29NADH-quinone oxidoreductase subunit D OS=Dinoroseo... [more]
NUOD_ANAMM1.570e-1366.07NADH-quinone oxidoreductase subunit D OS=Anaplasma... [more]
NUOD_NITOC2.051e-1363.46NADH-quinone oxidoreductase subunit D OS=Nitrosoco... [more]
NUOD_BRASO2.051e-1360.34NADH-quinone oxidoreductase subunit D OS=Bradyrhiz... [more]
NUOD_BRASB2.051e-1360.34NADH-quinone oxidoreductase subunit D OS=Bradyrhiz... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11G07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11G07-N13-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069623 ID=CX069623; Name=CX069623; organism=Citrus sinensis; type=EST; length=888bp
AGGGGGAACCGCTCGCCCAGGGGCCCAGGGCTTTAACCACGCACCGGACC
CAAGGGATAGCATTCTCCATGCTATTCATACAAGGTTCGGGGAAAACCTG
AATAACCTTCTCTCGAAGGTAGGCGTGCCAGCTCCAGATAACTGGACGCC
TACCGAACTCGCCGCGCAAGTCATAGACGCGGAGGGGAACGCCCTCTATG
CCTTCGAGGCCAGCCTTCGAGAATTTGTTAACCCATCAGGTTCACAGTCC
CTACTTTATCTATGCGACTGAACTAATCAGTCTTATGATGGGCTCTTAAT
GCAGGCAAGGCGGTAGAGCTATCGCGCGCGGGCGAAGGAGATGCATTTCT
GGTACTGGTAGTACTGGACAAGCTCTCAGGGAATAATCTCTTTCTTATTT
CTGCCTTTCTTTCCCATGACGACTAGGAACGGGCAAATCAAAAATTTCAC
TTCGAATTTCGGACCTCAACATCCTGCTGCTCATGGTGTTTCACGATCAG
TATTGGAAATGAACGGAGAAGTGGTGGAACGTGCGGAACCACATATTGGA
TTACTCCAGTGCGGCACGAAGCCGCTGACGCCGAGTCGGCTCCTATGCCG
CTAGCTATGCCCTGCTTGGTCCCCCGGCACGGTGGAGGTTCCGTAGCGCG
TCATGAGCACCGGGCTAAGGGGCGGTTGAGCAACTCAAGCGAACCGCCCT
ACCTTACTACAACATAGGGACAGAAGGGAGAAGGTTGTGAAGGTGGCCTC
GTTATCCACACCTCCGGTCGGATGAATGGAGGACCGACCGACCCGGGTTT
TCATGAGCGTTGGCGGGTCCTGGAGTGCCTGTCAAGGGCGCTAGCGCATA
CCCCGGGGTGATCATCACCACCTGCACCTCACATCTCG
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