CX069623

Overview
NameCX069623
Unique NameCX069623
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069623 vs. ExPASy Swiss-Prot
Match: NUOD_BURP8 (NADH-quinone oxidoreductase subunit D OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=nuoD PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.678e-13
Identity = 34/52 (65.38%), Postives = 43/52 (82.69%), Query Frame = 2
Query:  434 QIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSR 589
            +IKN+T NFGPQHPAAHGV R VLE++GEV++RA+PHIGLL   T+ L  S+
Sbjct:    3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESK 54          
BLAST of CX069623 vs. ExPASy Swiss-Prot
Match: NUOD_BURCM (NADH-quinone oxidoreductase subunit D OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=nuoD PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.678e-13
Identity = 34/52 (65.38%), Postives = 43/52 (82.69%), Query Frame = 2
Query:  434 QIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSR 589
            +IKN+T NFGPQHPAAHGV R VLE++GEV++RA+PHIGLL   T+ L  S+
Sbjct:    3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESK 54          
BLAST of CX069623 vs. ExPASy Swiss-Prot
Match: NUOD_BURCJ (NADH-quinone oxidoreductase subunit D OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=nuoD PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.678e-13
Identity = 34/52 (65.38%), Postives = 43/52 (82.69%), Query Frame = 2
Query:  434 QIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSR 589
            +IKN+T NFGPQHPAAHGV R VLE++GEV++RA+PHIGLL   T+ L  S+
Sbjct:    3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESK 54          
BLAST of CX069623 vs. ExPASy Swiss-Prot
Match: NUOD_BURCH (NADH-quinone oxidoreductase subunit D OS=Burkholderia cenocepacia (strain HI2424) GN=nuoD PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.678e-13
Identity = 34/52 (65.38%), Postives = 43/52 (82.69%), Query Frame = 2
Query:  434 QIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSR 589
            +IKN+T NFGPQHPAAHGV R VLE++GEV++RA+PHIGLL   T+ L  S+
Sbjct:    3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESK 54          
BLAST of CX069623 vs. ExPASy Swiss-Prot
Match: NUOD_BURCC (NADH-quinone oxidoreductase subunit D OS=Burkholderia cenocepacia (strain MC0-3) GN=nuoD PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.678e-13
Identity = 34/52 (65.38%), Postives = 43/52 (82.69%), Query Frame = 2
Query:  434 QIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSR 589
            +IKN+T NFGPQHPAAHGV R VLE++GEV++RA+PHIGLL   T+ L  S+
Sbjct:    3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESK 54          
BLAST of CX069623 vs. ExPASy Swiss-Prot
Match: NUOD_BURCA (NADH-quinone oxidoreductase subunit D OS=Burkholderia cenocepacia (strain AU 1054) GN=nuoD PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.678e-13
Identity = 34/52 (65.38%), Postives = 43/52 (82.69%), Query Frame = 2
Query:  434 QIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSR 589
            +IKN+T NFGPQHPAAHGV R VLE++GEV++RA+PHIGLL   T+ L  S+
Sbjct:    3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESK 54          
BLAST of CX069623 vs. ExPASy Swiss-Prot
Match: NUOD2_BEII9 (NADH-quinone oxidoreductase subunit D 2 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=nuoD2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.678e-13
Identity = 36/50 (72.00%), Postives = 41/50 (82.00%), Query Frame = 2
Query:  440 KNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSR 589
            +NFT NFGPQHPAAHGV R VLE++GEVVERA+PHIGLL  GT+ L   R
Sbjct:    7 RNFTVNFGPQHPAAHGVLRLVLELDGEVVERADPHIGLLHRGTEKLIEYR 56          
BLAST of CX069623 vs. ExPASy Swiss-Prot
Match: NUOD_XANOR (NADH-quinone oxidoreductase subunit D OS=Xanthomonas oryzae pv. oryzae GN=nuoD PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.498e-13
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 2
Query:  434 QIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSR 589
            +I+N+T NFGPQHPAAHGV R +LEM+GE V RA+PHIGLL  GT+ L  S+
Sbjct:   21 EIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESK 72          
BLAST of CX069623 vs. ExPASy Swiss-Prot
Match: NUOD_XANOP (NADH-quinone oxidoreductase subunit D OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=nuoD PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.498e-13
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 2
Query:  434 QIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSR 589
            +I+N+T NFGPQHPAAHGV R +LEM+GE V RA+PHIGLL  GT+ L  S+
Sbjct:   21 EIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESK 72          
BLAST of CX069623 vs. ExPASy Swiss-Prot
Match: NUOD_XANOM (NADH-quinone oxidoreductase subunit D OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=nuoD PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.498e-13
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 2
Query:  434 QIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSR 589
            +I+N+T NFGPQHPAAHGV R +LEM+GE V RA+PHIGLL  GT+ L  S+
Sbjct:   21 EIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESK 72          
The following BLAST results are available for this feature:
BLAST of CX069623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
NUOD_BURP82.678e-1365.38NADH-quinone oxidoreductase subunit D OS=Burkholde... [more]
NUOD_BURCM2.678e-1365.38NADH-quinone oxidoreductase subunit D OS=Burkholde... [more]
NUOD_BURCJ2.678e-1365.38NADH-quinone oxidoreductase subunit D OS=Burkholde... [more]
NUOD_BURCH2.678e-1365.38NADH-quinone oxidoreductase subunit D OS=Burkholde... [more]
NUOD_BURCC2.678e-1365.38NADH-quinone oxidoreductase subunit D OS=Burkholde... [more]
NUOD_BURCA2.678e-1365.38NADH-quinone oxidoreductase subunit D OS=Burkholde... [more]
NUOD2_BEII92.678e-1372.00NADH-quinone oxidoreductase subunit D 2 OS=Beijeri... [more]
NUOD_XANOR3.498e-1365.38NADH-quinone oxidoreductase subunit D OS=Xanthomon... [more]
NUOD_XANOP3.498e-1365.38NADH-quinone oxidoreductase subunit D OS=Xanthomon... [more]
NUOD_XANOM3.498e-1365.38NADH-quinone oxidoreductase subunit D OS=Xanthomon... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11G07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11G07-N13-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069623 ID=CX069623; Name=CX069623; organism=Citrus sinensis; type=EST; length=888bp
AGGGGGAACCGCTCGCCCAGGGGCCCAGGGCTTTAACCACGCACCGGACC
CAAGGGATAGCATTCTCCATGCTATTCATACAAGGTTCGGGGAAAACCTG
AATAACCTTCTCTCGAAGGTAGGCGTGCCAGCTCCAGATAACTGGACGCC
TACCGAACTCGCCGCGCAAGTCATAGACGCGGAGGGGAACGCCCTCTATG
CCTTCGAGGCCAGCCTTCGAGAATTTGTTAACCCATCAGGTTCACAGTCC
CTACTTTATCTATGCGACTGAACTAATCAGTCTTATGATGGGCTCTTAAT
GCAGGCAAGGCGGTAGAGCTATCGCGCGCGGGCGAAGGAGATGCATTTCT
GGTACTGGTAGTACTGGACAAGCTCTCAGGGAATAATCTCTTTCTTATTT
CTGCCTTTCTTTCCCATGACGACTAGGAACGGGCAAATCAAAAATTTCAC
TTCGAATTTCGGACCTCAACATCCTGCTGCTCATGGTGTTTCACGATCAG
TATTGGAAATGAACGGAGAAGTGGTGGAACGTGCGGAACCACATATTGGA
TTACTCCAGTGCGGCACGAAGCCGCTGACGCCGAGTCGGCTCCTATGCCG
CTAGCTATGCCCTGCTTGGTCCCCCGGCACGGTGGAGGTTCCGTAGCGCG
TCATGAGCACCGGGCTAAGGGGCGGTTGAGCAACTCAAGCGAACCGCCCT
ACCTTACTACAACATAGGGACAGAAGGGAGAAGGTTGTGAAGGTGGCCTC
GTTATCCACACCTCCGGTCGGATGAATGGAGGACCGACCGACCCGGGTTT
TCATGAGCGTTGGCGGGTCCTGGAGTGCCTGTCAAGGGCGCTAGCGCATA
CCCCGGGGTGATCATCACCACCTGCACCTCACATCTCG
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