DR403938

Overview
NameDR403938
Unique NameDR403938
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length455
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403938 vs. ExPASy Swiss-Prot
Match: METE_STAA1 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=metE PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 9.726e-40
Identity = 86/140 (61.43%), Postives = 99/140 (70.71%), Query Frame = 2
Query:   17 ALSMTARPMKGMLXGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFRE 436
            A S+T +P+KGML GPVTILNWSF R D PR     QIALAI +EV  LE AGI VIQ+DE ALREGLPLR   H  YL  AV SF++    V+D TQIHTHMCYS F  IIH+I D+DADVI+IE SRS   L+  F +
Sbjct:  529 AQSLTDKPVKGMLTGPVTILNWSFERVDLPRKVVQDQIALAINEEVLALEAAGIKVIQVDEPALREGLPLRSEYHEQYLKDAVLSFKLATSSVRDETQIHTHMCYSQFGQIIHAIHDLDADVISIETSRSHGDLIKDFED 668          
BLAST of DR403938 vs. ExPASy Swiss-Prot
Match: METE_TRIEI (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Trichodesmium erythraeum (strain IMS101) GN=metE PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 8.233e-39
Identity = 75/136 (55.15%), Postives = 103/136 (75.74%), Query Frame = 2
Query:   14 LALSMTARPMKGMLXGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLL 421
            +A S+T +P+KGML GPVT+LNWS+ R D  R E  +Q+ALAI++E++DLEKAG   IQ+DE A+REGLPL++     YL+WAV +FR++    +  TQ+HTHMCYS F DI+ SI  +DADVI+IE+SRS+ + L
Sbjct:  530 VAQSLTEKPVKGMLTGPVTMLNWSYPRTDISRQEQAFQLALAIREELKDLEKAGAAFIQVDEPAMREGLPLKQQRWHEYLNWAVDAFRLSTAIARPETQVHTHMCYSEFGDIMESIKQLDADVISIEDSRSNNETL 665          
BLAST of DR403938 vs. ExPASy Swiss-Prot
Match: METE_THEEB (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Thermosynechococcus elongatus (strain BP-1) GN=metE PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.649e-37
Identity = 78/136 (57.35%), Postives = 96/136 (70.59%), Query Frame = 2
Query:   14 LALSMTARPMKGMLXGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLL 421
            +A S+T + +K ML GPVT++NWSF R D PR E   QIALA++DEV DLE AG  +IQIDE ALREGLPL+      YL WAV +FR+     +  TQIHTHMCYS F DII  I  +DADV++IENSRS+ + L
Sbjct:  536 VAQSLTDKIVKAMLTGPVTMINWSFTRTDIPRSEQAMQIALALRDEVADLEAAGAKMIQIDEPALREGLPLKAERWNEYLSWAVDAFRLAAGVAKPETQIHTHMCYSEFGDIIEHIERLDADVLSIENSRSNNETL 671          
BLAST of DR403938 vs. ExPASy Swiss-Prot
Match: METE_THESQ (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Thermotoga sp. (strain RQ2) GN=metE PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.717e-36
Identity = 72/138 (52.17%), Postives = 100/138 (72.46%), Query Frame = 2
Query:   17 ALSMTARPMKGMLXGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVF 430
            A S+T +P+KGML GPVTI++WS+ R D P  E  YQIALAI +EV+DLE+AGI ++QIDE A RE  P++KS+   Y +WA+++F +     +  TQIH HMCYS+FN+II  I  ++ DVI+IE SRS  +++S F
Sbjct:  518 AQSLTEKPVKGMLTGPVTIMSWSYYREDIPEREIAYQIALAINEEVKDLEEAGIKIVQIDEPAFREKAPIKKSKWPEYFEWAINAFNLA-ANARPETQIHAHMCYSDFNEIIEYIHQLEFDVISIEASRSKGEIISAF 654          
BLAST of DR403938 vs. ExPASy Swiss-Prot
Match: METE_THEMA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Thermotoga maritima GN=metE PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.717e-36
Identity = 72/138 (52.17%), Postives = 100/138 (72.46%), Query Frame = 2
Query:   17 ALSMTARPMKGMLXGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVF 430
            A S+T +P+KGML GPVTI++WS+ R D P  E  YQIALAI +EV+DLE+AGI ++QIDE A RE  P++KS+   Y +WA+++F +     +  TQIH HMCYS+FN+II  I  ++ DVI+IE SRS  +++S F
Sbjct:  518 AQSLTEKPVKGMLTGPVTIMSWSYYREDIPEREIAYQIALAINEEVKDLEEAGIKIVQIDEPAFREKAPIKKSKWPEYFEWAINAFNLA-ANARPETQIHAHMCYSDFNEIIEYIHQLEFDVISIEASRSKGEIISAF 654          
BLAST of DR403938 vs. ExPASy Swiss-Prot
Match: METE_THEP1 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=metE PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 3.824e-36
Identity = 71/138 (51.45%), Postives = 99/138 (71.74%), Query Frame = 2
Query:   17 ALSMTARPMKGMLXGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVF 430
            A S+T +P+KGML GP+TI+ WS+ R D P  E  YQIALAI +EV+DLE+AGI ++QIDE A RE  P++KS+   Y +WA+++F +     +  TQIH HMCYS+FN+II  I  ++ DVI+IE SRS  +++S F
Sbjct:  518 AQSLTEKPVKGMLTGPITIMGWSYYREDIPEREIAYQIALAINEEVKDLEEAGIKIVQIDEPAFREKAPVKKSKWPEYFEWAINAFNLA-ANARPETQIHAHMCYSDFNEIIEYIHQLEFDVISIEASRSKGEIISAF 654          
BLAST of DR403938 vs. ExPASy Swiss-Prot
Match: METE_CHLRE (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 3.580e-34
Identity = 71/137 (51.82%), Postives = 94/137 (68.61%), Query Frame = 2
Query:   14 LALSMTARPMKGMLXGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLS 424
            +A+   A+P+KG+L GPVTILNWSF R D  R     Q+ LA++ EV  LE AG  +IQ+D+ ALREGLPL     A YL WAV +FR+        TQ+ TH+CYS+F DI+ +I  MDADV+TIENSRSD+ +++
Sbjct:  553 VAIPTAAQPVKGLLTGPVTILNWSFPRKDISRAAQAMQLGLALRQEVAALEAAGCTIIQVDDPALREGLPLNGERWASYLSWAVDAFRLCTGVAAAGTQVVTHLCYSDFQDILPAIDRMDADVLTIENSRSDKPMMA 689          
BLAST of DR403938 vs. ExPASy Swiss-Prot
Match: METE_CANAL (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Candida albicans GN=MET6 PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 7.974e-34
Identity = 73/136 (53.68%), Postives = 97/136 (71.32%), Query Frame = 2
Query:    8 SSLALSMTARPMKGMLXGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRK-SEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDE 412
            S  A S+T++PMKGML GPVTIL WSF R+D        Q+ LA++DEV DLE AGI VIQ+DE A+REGLPLR   E + YL+WA  SFR+   GV+++TQIH+H CYS+ +   + I  +DADV++IE S+ D+
Sbjct:  552 SVYAQSITSKPMKGMLTGPVTILRWSFPRDDVSGKIQALQLGLALRDEVNDLEGAGITVIQVDEPAIREGLPLRAGKERSDYLNWAAQSFRVATSGVENSTQIHSHFCYSDLDP--NHIKALDADVVSIEFSKKDD 685          
BLAST of DR403938 vs. ExPASy Swiss-Prot
Match: METE_YEAST (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Saccharomyces cerevisiae GN=MET6 PE=1 SV=4)

HSP 1 Score: 139.043 bits (349), Expect = 8.817e-33
Identity = 70/136 (51.47%), Postives = 96/136 (70.59%), Query Frame = 2
Query:    8 SSLALSMTARPMKGMLXGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRK-SEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDE 412
            S  A S+T++P+KGML GP+T L WSF R+D  +     Q+ALA++DEV DLE AGI VIQ+DE ALREGLPLR+ +E + Y  WA  +FR+   GV + TQIH+H CYS+ +   + I  +DADV++IE S+ D+
Sbjct:  550 SVYAQSITSKPVKGMLTGPITCLRWSFPRDDVDQKTQAMQLALALRDEVNDLEAAGIKVIQVDEPALREGLPLREGTERSAYYTWAAEAFRVATSGVANKTQIHSHFCYSDLDP--NHIKALDADVVSIEFSKKDD 683          
The following BLAST results are available for this feature:
BLAST of DR403938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 269
Match NameE-valueIdentityDescription
METE_STAA19.726e-4061.435-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_TRIEI8.233e-3955.155-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_THEEB2.649e-3757.355-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_THESQ1.717e-3652.175-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_THEMA1.717e-3652.175-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_THEP13.824e-3651.455-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CHLRE3.580e-3451.825-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CANAL7.974e-3453.685-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_YEAST8.817e-3351.475-methyltetrahydropteroyltriglutamate--homocystein... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAH-PNP1246M02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246M02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403938 ID=DR403938; Name=DR403938; organism=Citrus sinensis; type=EST; length=455bp
GGGCTGGTCCTCCTTGGCTCTGAGCATGACTGCTCGCCCAATGAAGGGAA
TGCTTNNTGGCCCTGTCACCATTCTCAACTGGTCCTTTGTCAGAAATGAC
CAGCCCAGACATGAAACCTGCTACCAGATTGCTTTGGCCATCAAGGACGA
AGTCGAGGATCTTGAGAAGGCAGGCATTAACGTTATTCAAATTGATGAGG
CTGCCTTGAGGGAAGGATTGCCTCTTAGGAAATCTGAGCATGCTTTCTAC
TTGGACTGGGCAGTCCACTCCTTCAGAATCACCAACTGTGGTGTCCAGGA
CACTACCCAGATCCACACCCACATGTGCTACTCCAACTTCAACGACATTA
TCCACTCAATTATCGACATGGATGCTGATGTGATCACCATTGAGAACTCT
CGTTCTGATGAGAAGCTCCTGTCTGTCTTCCGTGAGGGAGTCAAGTATGG
TGCTG
back to top