CX069560

Overview
NameCX069560
Unique NameCX069560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PRS8_SCHPO (26S protease regulatory subunit 8 homolog OS=Schizosaccharomyces pombe GN=let1 PE=2 SV=1)

HSP 1 Score: 357.451 bits (916), Expect = 5.437e-98
Identity = 178/231 (77.06%), Postives = 198/231 (85.71%), Query Frame = 3
Query:  138 KQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            +  E + QYY Q I + +L + QKT NL RLEAQRN LN+RVR+L+EE+QLLQEPGSYVGEV+K MGKNKVLVKVHPEGKYVV            P+ RVALRNDSY L  ILP+KVDPLV+LM VEK+PDSTY+M+GGL++QIKEIKEVIELP+KHPELFESLGI QPKG+LLYGPPGTGKTLLARAVAHHTDC FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI
Sbjct:   11 QSNENIVQYYTQKIQDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQEPGSYVGEVIKTMGKNKVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPPGTGKTLLARAVAHHTDCKFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 241          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PRS8_MANSE (26S protease regulatory subunit 8 OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 357.451 bits (916), Expect = 5.437e-98
Identity = 180/232 (77.59%), Postives = 201/232 (86.64%), Query Frame = 3
Query:  135 SKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            S +GEG R YY+  I ELQL V +K+ NL RL+AQRNELN++VRML+EELQLLQE GSYVGEVVK M K KVLVKVHPEGK+VV             + RVALRN+SY LH ILP+KVDPLV+LM VEKVPDSTY+M+GGLD+QIKEIKEVIELP+KHPELF++LGIAQPKGVLLYGPPGTGKTLLARAVAHHT+CTFIRVSGSELVQK+IGEGSRMVRELFVMAREHAPSI
Sbjct:   10 STKGEGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSI 241          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PRS8_NAEFO (26S protease regulatory subunit 8 homolog OS=Naegleria fowleri PE=2 SV=1)

HSP 1 Score: 357.066 bits (915), Expect = 7.100e-98
Identity = 178/239 (74.48%), Postives = 199/239 (83.26%), Query Frame = 3
Query:  114 VCAAKGASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            V  A  +S    GL+ YY+  I E ++ +R K  NL RL+AQRNELN RVR LKEELQ LQEPGS+VGEVVKVMGK KVL+K+  EGKY+V            P  RVALRNDSY LH ILP+K+DPLV+LMKVEKVPD+TY+M+GGLD+QIKEIKEVIELPIKHPELFESLGIAQPKGV++YGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGS+MVRELFVMAREHAPSI
Sbjct:   14 VVLASSSSASVNGLKNYYIAKIQEKEIVLRDKIENLRRLQAQRNELNGRVRSLKEELQQLQEPGSHVGEVVKVMGKKKVLIKISQEGKYIVDIDKSIELKDLTPGVRVALRNDSYALHKILPNKIDPLVSLMKVEKVPDATYEMVGGLDEQIKEIKEVIELPIKHPELFESLGIAQPKGVIMYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSKMVRELFVMAREHAPSI 252          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PRS8_YEAST (26S protease regulatory subunit 8 homolog OS=Saccharomyces cerevisiae GN=RPT6 PE=1 SV=4)

HSP 1 Score: 338.191 bits (866), Expect = 3.413e-92
Identity = 166/227 (73.13%), Postives = 191/227 (84.14%), Query Frame = 3
Query:  150 GLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            G++ Y+ Q I E +L++R KT N+ RLEAQRN LN +VR +K+EL+LLQEPGSYVGEV+K++   KVLVKV PEGKY+V             S RV LR+DSY+LH +L +K DPLV+LM VEKVPDSTYDM+GGL +QIKEIKEVIELP+KHPELFESLGIAQPKGV+LYGPPGTGKTLLARAVAHHTDC FIRVSG+ELVQKYIGEGSRMVRELFVMAREHAPSI
Sbjct:   18 GIKPYFEQKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQEPGSYVGEVIKIVSDKKVLVKVQPEGKYIVDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSI 244          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PRS8_ENCCU (26S protease regulatory subunit 8 homolog OS=Encephalitozoon cuniculi GN=RPT6 PE=1 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.698e-83
Identity = 158/232 (68.10%), Postives = 185/232 (79.74%), Query Frame = 3
Query:  138 KQGEGL-RQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            +  EG  + +Y   +  L++Q+ +KT  L  LE +R ELN RVR L+EE+ ++QEP S VG VV+ MGK +VLVK +P+GKY+V               RVALR+DSY +H ILP+KVDPLV+LM VEKVPDSTY MIGGLD+QIKEI+EVIELPIKHPELFE+LGIAQPKGVLLYGPPGTGKTLLARAVAHHT C FIRVSGSELVQKYIGEGSR+VRELF+MAREHAPSI
Sbjct:   61 RMAEGFCKNFYSNKLDHLEVQIAKKTKILRVLEQKRAELNRRVRFLREEISIVQEPSSNVGVVVEKMGKMQVLVKTNPDGKYLVKVEPGVNYDELKAGVRVALRSDSYDVHRILPTKVDPLVSLMMVEKVPDSTYQMIGGLDEQIKEIREVIELPIKHPELFENLGIAQPKGVLLYGPPGTGKTLLARAVAHHTQCKFIRVSGSELVQKYIGEGSRLVRELFIMAREHAPSI 292          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PSMR_METKA (Proteasome-activating nucleotidase OS=Methanopyrus kandleri GN=pan PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.228e-49
Identity = 109/241 (45.23%), Postives = 153/241 (63.49%), Query Frame = 3
Query:  138 KQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNE---LNSRVRM-------LKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            K+ E L +    H  +L+++ R++      LE +R+E   L   +R        L+ +LQ +++P   VG V +++   +V+VK     K+V             P   VAL   S  +  +LPS+ D  V  M+V++ PD +YD IGGLD+QI+EI+EV+E P+K PELFE +G+  PKGVLLYGPPGTGKTLLA+AVA+H D TFIR++  ELVQK+IGEG+R+VRELF +ARE APSI
Sbjct:   35 KRLEELERKLRAHEEKLRIEARRRKTLEKELEMERDEKAELREELRRKEVMIEKLRSDLQRMKKPPLIVGTVEEILDDGRVIVKSSTGPKFVSNVSPTVDRNELEPGANVALNQQSMAVVDVLPSEKDSRVLAMEVDESPDVSYDDIGGLDEQIREIREVVEKPLKEPELFEKVGVEPPKGVLLYGPPGTGKTLLAKAVANHADATFIRLAAPELVQKFIGEGARLVRELFELAREKAPSI 275          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PSMR_PYRFU (Proteasome-activating nucleotidase OS=Pyrococcus furiosus GN=pan PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.604e-49
Identity = 102/223 (45.74%), Postives = 147/223 (65.92%), Query Frame = 3
Query:  162 YYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            Y  + I +L+LQVR        LEA +  L   +  L+ E+  L++P ++ G V++V+  ++ +V+ +   ++VV            P TRVAL   +  +  ILP+  DP V   +V + P+ TY+ IGGL +Q++E++E IELP+KHPELFE +GI  PKGVLLYGPPG GKTL+A+A+AH  + TFIRV GSELV+KYIGEG+R+V ELF +A+E AP+I
Sbjct:   18 YLKRRIRQLELQVRM-------LEADKERLERELSRLRSEMSRLRQPPAFAGSVIEVLDDDRAIVQNYNGPRFVVRIAPWIDKSKLRPGTRVALDQRTMAIIEILPASKDPAVLGFEVVERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKAIAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTI 233          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PSMR_PYRHO (Proteasome-activating nucleotidase OS=Pyrococcus horikoshii GN=pan PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.573e-49
Identity = 102/223 (45.74%), Postives = 148/223 (66.37%), Query Frame = 3
Query:  162 YYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            Y  + I +L+LQVR        LEA +  L   +  L+ E+  L++P ++ G V++V+ +++ +V+ +   ++VV            P TRVAL   +  +  ILP+  DP V   +V + P+ TY+ IGGL +Q++E++E IELP+KHPELFE +GI  PKGVLLYGPPG GKTL+A+A+AH  + TFIRV GSELV+KYIGEG+R+V ELF +A+E AP+I
Sbjct:   21 YLKRRIRQLELQVRM-------LEADKERLERELSRLRSEMSRLRQPPAFAGTVIEVLDEDRAIVQNYNGPRFVVRIAPWIDRKKLRPGTRVALDQRTMAVVEILPTSKDPTVLGFEVIERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKALAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTI 236          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PSMR_METMJ (Proteasome-activating nucleotidase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 6.095e-49
Identity = 104/236 (44.07%), Postives = 146/236 (61.86%), Query Frame = 3
Query:  144 GEGLRQYYLQHIH-------ELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            GE + QY L+ I        EL+ Q RQ       +E Q+      +R LK E++ L+ P   +G V  V+  ++V+V+     +++V            P  R  L   S  +  +LP+  D  +  M++ + P+ TY+ IGGL+ QI+EI+E +ELP+  P+LFE +GI+ PKGVLLYGPPGTGKTLLARAVAH T+  F+RV GSELVQKYIGEG+R+VRELF +A++ APSI
Sbjct:   14 GEDIYQYLLERITNLENRNLELREQFRQMESEKRYVETQKIRYERELRKLKSEIEQLRSPPLVIGTVTDVIDNSRVIVRSSAGPRFLVRTSQLIDPDLLKPGVRCTLNQQSLAIVDVLPTSYDAQIYGMELVESPEETYENIGGLEPQIEEIREAVELPLTKPQLFEKVGISPPKGVLLYGPPGTGKTLLARAVAHQTNAHFLRVVGSELVQKYIGEGARLVRELFDLAKQRAPSI 249          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PSMR_PYRAB (Proteasome-activating nucleotidase OS=Pyrococcus abyssi GN=pan PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.358e-48
Identity = 101/223 (45.29%), Postives = 146/223 (65.47%), Query Frame = 3
Query:  162 YYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            Y  + I +L+LQVR        LEA +  L   +  L+ E+  L++P ++ G V++V+  ++ +V+ +   ++VV            P  RVAL   +  +  +LPS  DP V   +V + P+ TY+ IGGL +Q++E++E IELP+KHPELFE +GI  PKGVLLYGPPG GKTL+A+A+AH  + TFIRV GSELV+KYIGEG+R+V ELF +A+E AP+I
Sbjct:   21 YLKRRIRQLELQVRM-------LEADKERLERELSRLRSEMSRLRQPPAFAGTVIEVLDDDRAIVQNYNGPRFVVRIAPWIERDKLRPGARVALDQRTMAIIELLPSSKDPTVLGFEVIERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKALAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTI 236          
The following BLAST results are available for this feature:
BLAST of CX069560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 366
Match NameE-valueIdentityDescription
PRS8_SCHPO5.437e-9877.0626S protease regulatory subunit 8 homolog OS=Schiz... [more]
PRS8_MANSE5.437e-9877.5926S protease regulatory subunit 8 OS=Manduca sexta... [more]
PRS8_NAEFO7.100e-9874.4826S protease regulatory subunit 8 homolog OS=Naegl... [more]
PRS8_YEAST3.413e-9273.1326S protease regulatory subunit 8 homolog OS=Sacch... [more]
PRS8_ENCCU1.698e-8368.1026S protease regulatory subunit 8 homolog OS=Encep... [more]
PSMR_METKA1.228e-4945.23Proteasome-activating nucleotidase OS=Methanopyrus... [more]
PSMR_PYRFU1.604e-4945.74Proteasome-activating nucleotidase OS=Pyrococcus f... [more]
PSMR_PYRHO3.573e-4945.74Proteasome-activating nucleotidase OS=Pyrococcus h... [more]
PSMR_METMJ6.095e-4944.07Proteasome-activating nucleotidase OS=Methanoculle... [more]
PSMR_PYRAB1.358e-4845.29Proteasome-activating nucleotidase OS=Pyrococcus a... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11C09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11C09-F17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069560 ID=CX069560; Name=CX069560; organism=Citrus sinensis; type=EST; length=832bp
GAGACTTGATCCGAAAGACAATTAGATTCGAACAAATCGAACTCGTTCAC
TCGGAAAGAATGGCCGCTGTAGGAATCGAAACGAAGCAGCCGGAATCGGC
GGCGCCAGAGGAGGTGTGTGCGGCGAAAGGAGCATCGAAACAAGGAGAGG
GATTGAGGCAATACTACCTCCAACACATTCACGAACTCCAGCTCCAAGTC
CGTCAAAAAACCCACAATCTCAATCGCCTCGAAGCCCAGCGTAACGAACT
CAATTCTAGAGTGCGGATGCTTAAAGAAGAATTACAGCTTCTTCAAGAGC
CTGGATCCTATGTCGGTGAAGTTGTTAAAGTTATGGGAAAAAATAAGGTT
CTTGTTAAGGTTCATCCTGAGGGGAAATATGTTGTTGATATTGATAAAAG
TATTGATATAACCAAGATCACTCCGTCAACAAGAGTTGCACTTCGTAATG
ACAGCTATGTTCTTCATTTGATCCTGCCAAGCAAAGTAGATCCCCTGGTC
AACCTTATGAAGGTTGAAAAGGTCCCTGATTCTACATATGACATGATTGG
TGGCCTTGATCAGCAAATTAAGGAGATCAAGGAGGTCATTGAGCTTCCTA
TCAAACATCCCGAATTGTTCGAGTCTCTTGGAATAGCTCAACCCAAGGGT
GTATTGCTATATGGACCACCTGGTACTGGCAAAACACTGTTGGCTAGAGC
TGTGGCTCATCATACTGATTGTACTTTCATCAGGGTTTCTGGTTCTGAAT
TAGTCCAGAAATACATTGGAGAAGGCTCCAGAATGGTTAGAGAACTTTTT
GTTATGGCAAGGGAACATGCTCCGTCTATCAT
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