CX069560

Overview
NameCX069560
Unique NameCX069560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PS6AB_ARATH (26S protease regulatory subunit 6A homolog B OS=Arabidopsis thaliana GN=RPT5B PE=1 SV=3)

HSP 1 Score: 144.821 bits (364), Expect = 5.538e-34
Identity = 69/136 (50.74%), Postives = 99/136 (72.79%), Query Frame = 3
Query:  423 PSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            P   V +  DSY++   LPS+ D  V  M+V++ P   Y+ IGGL++QI+E+ E I LP+ H E FE LGI  PKGVLLYGPPGTGKTL+ARA A  T+ TF++++G +LVQ +IG+G+++VR+ F++A+E +P I
Sbjct:  131 PGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKEQFEKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFLLAKEKSPCI 266          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PS6AA_ARATH (26S protease regulatory subunit 6A homolog A OS=Arabidopsis thaliana GN=RPT5A PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.538e-34
Identity = 80/236 (33.90%), Postives = 130/236 (55.08%), Query Frame = 3
Query:  186 LQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNK---------------------VLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            L  ++R    +  R   + +    +++  +E+++L ++    VG +V+++  N                      V++K        +            P   V +  DSY++   LPS+ D  V  M+V++ P   Y+ IGGL++QI+E+ E I LP+ H E FE LG+  PKGVLLYGPPGTGKTL+ARA A  T+ TF++++G +LVQ +IG+G+++VR+ F +A+E AP I
Sbjct:   32 LDNEIRILKEDAQRTNLECDSYKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCI 267          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PRS6A_SOLLC (26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum GN=TBP1 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.234e-33
Identity = 79/236 (33.47%), Postives = 129/236 (54.66%), Query Frame = 3
Query:  186 LQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNK---------------------VLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            L  ++R     L R   + +    +++  +E+++L ++    VG +V+++  N                      V++K        +            P   V +  DSY++   LPS+ D  V  M+V++ P   Y  IGGL++QI+E+ E I LP+ H E F+ LG+  PKGVLLYGPPGTGKTL+ARA A  T+ TF++++G +LVQ +IG+G+++VR+ F +A+E +P I
Sbjct:   31 LDNEIRIIKEELQRTNLELDSFKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEEEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDNLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYHDIGGLEKQIQELVEAIVLPMTHQERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCI 266          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PRS6A_ORYSJ (26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp. japonica GN=TBP1 PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 4.689e-33
Identity = 79/236 (33.47%), Postives = 128/236 (54.24%), Query Frame = 3
Query:  186 LQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNK---------------------VLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            L  + R     L R   +      +++  +E+++L ++    VG +V+++  N                      V++K        +            P   V +  DSY++   LPS+ D  V  M+V++ P   Y+ IGGL++QI+E+ E I LP+ H + F+ LGI  PKGVLLYGPPGTGKTL+ARA A  T+ TF++++G +LVQ +IG+G+++VR+ F +A+E +P I
Sbjct:   37 LDNETRVLKDELQRTNLEVESYKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVIGLVDPEKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKDRFQKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCI 272          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: Y1297_ARCFU (Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus GN=AF_1297 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.388e-31
Identity = 62/103 (60.19%), Postives = 83/103 (80.58%), Query Frame = 3
Query:  522 VPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            VPD TY+ IGGL ++++ ++E+IELP+KHPELF+ LGI  PKGVLLYGPPGTGKTL+A+AVA+  D  FI +SG E++ KY GE  + +RE+F  A+E+APSI
Sbjct:  176 VPDVTYEDIGGLKRELRLVREMIELPLKHPELFQRLGIEPPKGVLLYGPPGTGKTLIAKAVANEVDAHFIPISGPEIMSKYYGESEQRLREIFEEAKENAPSI 278          

HSP 2 Score: 111.694 bits (278), Expect = 5.196e-24
Identity = 51/115 (44.35%), Postives = 80/115 (69.57%), Query Frame = 3
Query:  486 VDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            ++P      + +VP+  ++ IGGL+   +E+ E +E P+K+PE+F +  I  P+G+LL+GPPGTGKTLLA+AVA+ ++  FI V G EL+ K++GE  + VRE+F  AR+ AP +
Sbjct:  437 IEPSAMREVLVEVPNVKWEDIGGLEHAKQELMEAVEWPLKYPEVFRAANIKPPRGILLFGPPGTGKTLLAKAVANESNANFISVKGPELLSKWVGESEKHVREMFRKARQVAPCV 551          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: Y1156_METJA (Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus jannaschii GN=MJ1156 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.844e-30
Identity = 62/111 (55.86%), Postives = 85/111 (76.58%), Query Frame = 3
Query:  498 VNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            V+ +K  KVPD TY+ IGGL +++K+++E+IELP++HPELFE LGI  PKGVLL GPPGTGKTLLA+AVA+     F  ++G E++ KY+GE    +R++F  A E+APSI
Sbjct:  165 VSEIKETKVPDVTYEDIGGLKEEVKKVREMIELPMRHPELFEKLGIEPPKGVLLVGPPGTGKTLLAKAVANEAGANFYVINGPEIMSKYVGETEENLRKIFEEAEENAPSI 275          

HSP 2 Score: 114.005 bits (284), Expect = 1.047e-24
Identity = 53/115 (46.09%), Postives = 80/115 (69.57%), Query Frame = 3
Query:  486 VDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            V+P      + +VP+  ++ IGGL++  +E++E +E P+K  E+FE +G+  PKGVLL+GPPGTGKTLLA+AVA+ +   FI V G E+  K++GE  + +RE+F  AR+ AP I
Sbjct:  434 VEPSAMREVLVEVPNVKWEDIGGLEEVKQELREAVEWPLKAKEVFEKIGVRPPKGVLLFGPPGTGKTLLAKAVANESGANFISVKGPEIFSKWVGESEKAIREIFRKARQSAPCI 548          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PRS6A_SCHPO (26S protease regulatory subunit 6A OS=Schizosaccharomyces pombe GN=tbp1 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.408e-29
Identity = 60/136 (44.12%), Postives = 94/136 (69.12%), Query Frame = 3
Query:  423 PSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            P   + +  DSY++   LPS+ D  V  M+V++ P   Y  IGGL +QI+E+ E I LP++  + F  LG+  PKG L++GPPGTGKTLLARA A  ++ TF++++  +LVQ +IG+G+++VR+ F +A+E +P+I
Sbjct:  146 PGDLIGVNKDSYLIIDKLPSEYDSRVKAMEVDEKPTERYSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPKGCLMFGPPGTGKTLLARACAAQSNATFLKLAAPQLVQMFIGDGAKLVRDAFALAKEKSPAI 281          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: VAT_THEAC (VCP-like ATPase OS=Thermoplasma acidophilum GN=vat PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.107e-29
Identity = 59/106 (55.66%), Postives = 82/106 (77.36%), Query Frame = 3
Query:  513 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            +E+V   +Y+ IGGL +Q+ +I+E+IELP+KHPELFE LGI  PKGV+LYGPPGTGKTL+ARAVA+ +   F+ ++G E++ KY G+  + +RE+F  A E APSI
Sbjct:  181 LEEVSRISYEDIGGLSEQLGKIREMIELPLKHPELFERLGITPPKGVILYGPPGTGKTLIARAVANESGANFLSINGPEIMSKYYGQSEQKLREIFSKAEETAPSI 286          

HSP 2 Score: 110.538 bits (275), Expect = 1.158e-23
Identity = 51/104 (49.04%), Postives = 75/104 (72.12%), Query Frame = 3
Query:  519 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            +VP+  +D IGGL+   +EIKE +ELP+  P++F+ LGI   KG LLYGPPG GKTLLA+AVA  ++  FI + G E++ K++GE  + +RE+F  A++ AP+I
Sbjct:  460 EVPNVHWDDIGGLEDVKREIKETVELPLLKPDVFKRLGIRPSKGFLLYGPPGVGKTLLAKAVATESNANFISIKGPEVLSKWVGESEKAIREIFKKAKQVAPAI 563          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: CDCH_HALSA (Protein cdcH OS=Halobacterium salinarium GN=cdcH PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.254e-27
Identity = 52/99 (52.53%), Postives = 79/99 (79.80%), Query Frame = 3
Query:  534 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            TY+ IGGL+ +I+ ++E++ELP+KHP++F+ LGI  P+GVLL+GPPGTGKTLLA+AVA+ T  +F  ++G E++ KY GE  + +RE+F  A++ +PSI
Sbjct:  187 TYEDIGGLENEIQRVREMVELPMKHPQIFQKLGIEPPQGVLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDAKDDSPSI 285          

HSP 2 Score: 111.309 bits (277), Expect = 6.786e-24
Identity = 51/117 (43.59%), Postives = 78/117 (66.67%), Query Frame = 3
Query:  480 SKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            S+V+P      + ++P  T+D +GGL +    +KE +E P+  PE F  +G+  P GVLLYGPPGTGKTL+A+AVA+ T+  FI V G +L+ K++GE  + +R+ F  AR+ AP++
Sbjct:  442 SEVEPSAMREVLVELPKITWDDVGGLTEAKNNVKESVEWPLNQPEKFTRMGVEPPAGVLLYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQVAPTV 558          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: SAV_SULAC (Protein SAV OS=Sulfolobus acidocaldarius GN=sav PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 2.109e-25
Identity = 53/102 (51.96%), Postives = 77/102 (75.49%), Query Frame = 3
Query:  525 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            P  +++ IG L++  ++I+E++E P++HPELF+ LGI  PKG+LLYGPPGTGKTLLARA+A+     FI V+G E++ K+ GE  + +RE+F  A E+APSI
Sbjct:  207 PKVSWEDIGDLEEAKQKIREIVEWPMRHPELFQRLGIDPPKGILLYGPPGTGKTLLARALANEIGAYFITVNGPEIMSKFYGESEQRIREIFKEAEENAPSI 308          

HSP 2 Score: 110.153 bits (274), Expect = 1.512e-23
Identity = 48/104 (46.15%), Postives = 74/104 (71.15%), Query Frame = 3
Query:  519 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            +VP   ++ IGGLD   ++++E +E P++ PELF   G+  PKG+LL+GPPGTGKT+LA+AVA  +   FI V G E++ K++GE  + +RE+F  AR+ AP++
Sbjct:  480 EVPKVNWNDIGGLDNVKQQLREAVEWPLRFPELFTKSGVTPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPTV 583          
The following BLAST results are available for this feature:
BLAST of CX069560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 366
Match NameE-valueIdentityDescription
PS6AB_ARATH5.538e-3450.7426S protease regulatory subunit 6A homolog B OS=Ar... [more]
PS6AA_ARATH5.538e-3433.9026S protease regulatory subunit 6A homolog A OS=Ar... [more]
PRS6A_SOLLC1.234e-3333.4726S protease regulatory subunit 6A homolog OS=Sola... [more]
PRS6A_ORYSJ4.689e-3333.4726S protease regulatory subunit 6A homolog OS=Oryz... [more]
Y1297_ARCFU4.388e-3160.19Cell division cycle protein 48 homolog AF_1297 OS=... [more]
Y1156_METJA2.844e-3055.86Cell division cycle protein 48 homolog MJ1156 OS=M... [more]
PRS6A_SCHPO2.408e-2944.1226S protease regulatory subunit 6A OS=Schizosaccha... [more]
VAT_THEAC4.107e-2955.66VCP-like ATPase OS=Thermoplasma acidophilum GN=vat... [more]
CDCH_HALSA2.254e-2752.53Protein cdcH OS=Halobacterium salinarium GN=cdcH P... [more]
SAV_SULAC2.109e-2551.96Protein SAV OS=Sulfolobus acidocaldarius GN=sav PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11C09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11C09-F17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069560 ID=CX069560; Name=CX069560; organism=Citrus sinensis; type=EST; length=832bp
GAGACTTGATCCGAAAGACAATTAGATTCGAACAAATCGAACTCGTTCAC
TCGGAAAGAATGGCCGCTGTAGGAATCGAAACGAAGCAGCCGGAATCGGC
GGCGCCAGAGGAGGTGTGTGCGGCGAAAGGAGCATCGAAACAAGGAGAGG
GATTGAGGCAATACTACCTCCAACACATTCACGAACTCCAGCTCCAAGTC
CGTCAAAAAACCCACAATCTCAATCGCCTCGAAGCCCAGCGTAACGAACT
CAATTCTAGAGTGCGGATGCTTAAAGAAGAATTACAGCTTCTTCAAGAGC
CTGGATCCTATGTCGGTGAAGTTGTTAAAGTTATGGGAAAAAATAAGGTT
CTTGTTAAGGTTCATCCTGAGGGGAAATATGTTGTTGATATTGATAAAAG
TATTGATATAACCAAGATCACTCCGTCAACAAGAGTTGCACTTCGTAATG
ACAGCTATGTTCTTCATTTGATCCTGCCAAGCAAAGTAGATCCCCTGGTC
AACCTTATGAAGGTTGAAAAGGTCCCTGATTCTACATATGACATGATTGG
TGGCCTTGATCAGCAAATTAAGGAGATCAAGGAGGTCATTGAGCTTCCTA
TCAAACATCCCGAATTGTTCGAGTCTCTTGGAATAGCTCAACCCAAGGGT
GTATTGCTATATGGACCACCTGGTACTGGCAAAACACTGTTGGCTAGAGC
TGTGGCTCATCATACTGATTGTACTTTCATCAGGGTTTCTGGTTCTGAAT
TAGTCCAGAAATACATTGGAGAAGGCTCCAGAATGGTTAGAGAACTTTTT
GTTATGGCAAGGGAACATGCTCCGTCTATCAT
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