CX069560

Overview
NameCX069560
Unique NameCX069560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PSMR_SULIA (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.27) GN=pan PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 9.425e-42
Identity = 91/216 (42.13%), Postives = 128/216 (59.26%), Query Frame = 3
Query:  183 ELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            E+QL VR     +  L+ +   L   +   K E++ +  P      V+ V+   +VLV+       VV            P   VAL      +  +LP K DP+V  M++ + P+ TY  IGGL++QIKE++EV+ELP+K PE+F  +G+  PKGVLLYGPPGTGKT+LA+AVA  ++  FI V  SE  QK++GEG+R+VRELF MA+  APSI
Sbjct:   16 EVQL-VRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSI 230          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PRS7_SPIOL (26S protease regulatory subunit 7 OS=Spinacia oleracea GN=RPT1 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 9.425e-42
Identity = 89/186 (47.85%), Postives = 119/186 (63.98%), Query Frame = 3
Query:  267 MLKEELQLLQEPGSYVGEVVKVMGKN----KVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAR 812
            ++ ++  + +E    V    K++  N    K ++ V    K+VV               RV +  + Y + + LP K+DP V +M VE+ PD TY+ +GG  +QI++++EV+ELP+ HPE F  LGI  PKGVL YGPPGTGKTLLARAVA+ TD  FIRV GSELVQKY+GEG+RMVRELF MAR
Sbjct:   73 LVSDKQMMQEEQPLQVARCTKIINPNTEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMAR 258          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PRS7_PONAB (26S protease regulatory subunit 7 OS=Pongo abelii GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 9.425e-42
Identity = 97/225 (43.11%), Postives = 134/225 (59.56%), Query Frame = 3
Query:  165 YLQHIHELQLQVRQKTHNLNRL----EAQRNELNSRVRMLKEELQLLQ-EPGSYVGEVVKVMGKN----KVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAR 812
            Y + I +++  ++Q    +N L    E+        +  L  + Q LQ E    V    K++  +    K ++ V    K+VV               RV +  + Y +H+ LP K+DP V +M+VE+ PD TY  +GG  +QI++++EV+E P+ HPE F +LGI  PKGVLL+GPPGTGKTL ARAVA+ TD  FIRV GSELVQKY+GEG+RMVRELF MAR
Sbjct:   41 YSRQIKQVEDDIQQLLKKINELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIITADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMAR 265          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PRS7_ORYSJ (26S protease regulatory subunit 7 OS=Oryza sativa subsp. japonica GN=RPT1A PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 9.425e-42
Identity = 89/186 (47.85%), Postives = 119/186 (63.98%), Query Frame = 3
Query:  267 MLKEELQLLQEPGSYVGEVVKVMGKN----KVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAR 812
            ++ ++  + +E    V    K++  N    K ++ V    K+VV               RV +  + Y + + LP K+DP V +M VE+ PD TY+ +GG  +QI++++EV+ELP+ HPE F  LGI  PKGVL YGPPGTGKTLLARAVA+ TD  FIRV GSELVQKY+GEG+RMVRELF MAR
Sbjct:   73 LVSDKQMMQEEQPLQVARCTKIISPNTDDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMAR 258          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PRS7A_ARATH (26S protease regulatory subunit 7 homolog A OS=Arabidopsis thaliana GN=RPT1A PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 9.425e-42
Identity = 89/186 (47.85%), Postives = 119/186 (63.98%), Query Frame = 3
Query:  267 MLKEELQLLQEPGSYVGEVVKVMGKN----KVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAR 812
            ++ ++  + +E    V    K++  N    K ++ V    K+VV               RV +  + Y + + LP K+DP V +M VE+ PD TY+ +GG  +QI++++EV+ELP+ HPE F  LGI  PKGVL YGPPGTGKTLLARAVA+ TD  FIRV GSELVQKY+GEG+RMVRELF MAR
Sbjct:   73 LVSDKQMMQEEQPLQVARCTKIISPNTEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMAR 258          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PRS4_SCHPO (26S protease regulatory subunit 4 homolog OS=Schizosaccharomyces pombe GN=mts2 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 9.425e-42
Identity = 94/227 (41.41%), Postives = 136/227 (59.91%), Query Frame = 3
Query:  153 LRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVH-PEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            LR   +Q IH+  L   +   N  RL+ Q    + R +  +  +  ++     VG + +++  +  +V    PE  Y V            P   V L + +  +  +L    DP++N+MK++K P  +Y  IGGL+ QI+EIKE +ELP+ HPEL+E +GI  PKGV+LYG PGTGKTLLA+AVA+ T  TF+RV GSEL+QKY+G+G R+VR+LF  A EH+PSI
Sbjct:   67 LRLLKMQRIHDHLLMEEEYVQNQERLKPQ----DERTQEERNRVDEIRGTPMSVGTLEEIIDDDHAIVSTAGPE--YYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPRLVRQLFNAAEEHSPSI 287          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PRS10_CAEEL (Probable 26S protease regulatory subunit S10B OS=Caenorhabditis elegans GN=rpt-4 PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 9.425e-42
Identity = 90/212 (42.45%), Postives = 128/212 (60.38%), Query Frame = 3
Query:  195 QVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            + R     L  L  + +E+  +    + +++ LQ  G  VGEV+K + + K +VK     +YVV              TRV+L   +  +   LP +VDPLV  M  E   + +Y  +GGL +QI+E++EV+ELP+ +PELF+ +GI  PKG LL+GPPGTGKTLLARAVA   DC F++V  S +V KYIGE +RM+RE+F  AR+H P I
Sbjct:   35 ECRDIEQKLKDLRKKESEMTKQFDKSENDIKSLQSVGQIVGEVLKQLSEEKFIVKATNGPRYVVGCRRSINKEELKQGTRVSLDMTTLTIMRQLPREVDPLVYKMSHEDPGNISYSDVGGLAEQIRELREVVELPLINPELFKRVGITPPKGCLLFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARDHQPCI 246          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PRS7B_ARATH (26S protease regulatory subunit 7 homolog B OS=Arabidopsis thaliana GN=RPT1B PE=3 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 1.231e-41
Identity = 96/193 (49.74%), Postives = 122/193 (63.21%), Query Frame = 3
Query:  246 ELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKN----KVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAR 812
            +L S  +M++EE  LL      V    +++  N    K +V +   GKYVV               RV +    Y + + LP K+DP V +M VE+ PD+TY  IGG  +QI++I+EV+ELP+ HPE F  LGI  PKGVL YGPPG+GKTL+ARAVA+ T   FIRV GSELVQKYIGEG+RMVRELF MAR
Sbjct:  109 DLVSDKQMMQEEQPLL------VATCTQIISPNTEDAKYVVDIKKIGKYVVGLGDKASPTDIEAGMRVGVDQKKYQIQIPLPPKIDPSVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPKGVLCYGPPGSGKTLVARAVANRTGACFIRVVGSELVQKYIGEGARMVRELFQMAR 295          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PRS4_DICDI (26S protease regulatory subunit 4 homolog OS=Dictyostelium discoideum GN=psmC1 PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.100e-41
Identity = 93/226 (41.15%), Postives = 141/226 (62.39%), Query Frame = 3
Query:  153 LRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            L+Q  L+ I +  L  ++   N +  + + +E NS+ +  ++ ++ L+     VG + +++  N  +V      ++ V                V L N +  +  ++  +VDP+VN+MKVEK P  +Y  IGGL+ Q++E+KE IELP+ HPEL+E +GI  PKGV+LYG PGTGKTLLA+AVA+ T  TF+RV GSEL+QKY+G+G ++VRELF +A E APSI
Sbjct:   56 LKQLKLERIKDYLLMEQEFLQNYDLNQPKVDE-NSKEQADEKIIEELRGDPLTVGNLEEIIDDNHAIVSSTVGPEHYVRIMSFVDKSKLYLGATVLLNNKTLSVVGVIDGEVDPMVNVMKVEKAPTESYSDIGGLEAQVQEMKEAIELPLTHPELYEEIGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVADECAPSI 280          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PRS10_SCHPO (Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe GN=rpt4 PE=2 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 2.100e-41
Identity = 93/228 (40.79%), Postives = 133/228 (58.33%), Query Frame = 3
Query:  147 EGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            E  + Y LQH        R+    L  L     +L  +    +++++ LQ  G  +GEV+K +   + +VK     +YVV               RV+L   +  +  ILP +VDPLV  M +E   D ++  +GGL++QI+E++EVIELP+K+PELF  +GI  PKGVLLYGPPGTGKTLLARAVA      F++V  S +V KYIGE +R++RE+F  A+EH P +
Sbjct:    9 EKYKSYLLQH--------REWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQLDSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMSIEDPGDISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAVAASLGVNFLKVVSSAIVDKYIGESARIIREMFGYAKEHEPCV 228          
The following BLAST results are available for this feature:
BLAST of CX069560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 366
Match NameE-valueIdentityDescription
PSMR_SULIA9.425e-4242.13Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PRS7_SPIOL9.425e-4247.8526S protease regulatory subunit 7 OS=Spinacia oler... [more]
PRS7_PONAB9.425e-4243.1126S protease regulatory subunit 7 OS=Pongo abelii ... [more]
PRS7_ORYSJ9.425e-4247.8526S protease regulatory subunit 7 OS=Oryza sativa ... [more]
PRS7A_ARATH9.425e-4247.8526S protease regulatory subunit 7 homolog A OS=Ara... [more]
PRS4_SCHPO9.425e-4241.4126S protease regulatory subunit 4 homolog OS=Schiz... [more]
PRS10_CAEEL9.425e-4242.45Probable 26S protease regulatory subunit S10B OS=C... [more]
PRS7B_ARATH1.231e-4149.7426S protease regulatory subunit 7 homolog B OS=Ara... [more]
PRS4_DICDI2.100e-4141.1526S protease regulatory subunit 4 homolog OS=Dicty... [more]
PRS10_SCHPO2.100e-4140.79Probable 26S protease subunit rpt4 OS=Schizosaccha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11C09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11C09-F17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069560 ID=CX069560; Name=CX069560; organism=Citrus sinensis; type=EST; length=832bp
GAGACTTGATCCGAAAGACAATTAGATTCGAACAAATCGAACTCGTTCAC
TCGGAAAGAATGGCCGCTGTAGGAATCGAAACGAAGCAGCCGGAATCGGC
GGCGCCAGAGGAGGTGTGTGCGGCGAAAGGAGCATCGAAACAAGGAGAGG
GATTGAGGCAATACTACCTCCAACACATTCACGAACTCCAGCTCCAAGTC
CGTCAAAAAACCCACAATCTCAATCGCCTCGAAGCCCAGCGTAACGAACT
CAATTCTAGAGTGCGGATGCTTAAAGAAGAATTACAGCTTCTTCAAGAGC
CTGGATCCTATGTCGGTGAAGTTGTTAAAGTTATGGGAAAAAATAAGGTT
CTTGTTAAGGTTCATCCTGAGGGGAAATATGTTGTTGATATTGATAAAAG
TATTGATATAACCAAGATCACTCCGTCAACAAGAGTTGCACTTCGTAATG
ACAGCTATGTTCTTCATTTGATCCTGCCAAGCAAAGTAGATCCCCTGGTC
AACCTTATGAAGGTTGAAAAGGTCCCTGATTCTACATATGACATGATTGG
TGGCCTTGATCAGCAAATTAAGGAGATCAAGGAGGTCATTGAGCTTCCTA
TCAAACATCCCGAATTGTTCGAGTCTCTTGGAATAGCTCAACCCAAGGGT
GTATTGCTATATGGACCACCTGGTACTGGCAAAACACTGTTGGCTAGAGC
TGTGGCTCATCATACTGATTGTACTTTCATCAGGGTTTCTGGTTCTGAAT
TAGTCCAGAAATACATTGGAGAAGGCTCCAGAATGGTTAGAGAACTTTTT
GTTATGGCAAGGGAACATGCTCCGTCTATCAT
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