CX069560

Overview
NameCX069560
Unique NameCX069560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PRS6B_BOVIN (26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.352e-39
Identity = 86/227 (37.89%), Postives = 132/227 (58.15%), Query Frame = 3
Query:  171 QHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLK-------EELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            + + +L  + ++    L  LE Q   +    + LK       EE++ +Q     +G+ ++ + +N  +V       Y V            P+  VAL   S  L  +LP + D  + ++  ++ PD  Y  IGG+D Q +E++E +ELP+ H EL++ +GI  P+GVL+YGPPG GKT+LA+AVAHHT   FIRV GSE VQKY+GEG RMVR++F +A+E+AP+I
Sbjct:   35 EDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAI 261          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PSMR_SULTO (Proteasome-activating nucleotidase OS=Sulfolobus tokodaii GN=pan PE=3 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 4.378e-39
Identity = 92/226 (40.71%), Postives = 129/226 (57.08%), Query Frame = 3
Query:  153 LRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            L  Y  +H +     VR     +  L  +  +L   +   K EL+ L  P      V+ ++   KV+V+       +V            P + VAL      +  +LP + D  V   +V + P+  Y  IGGL++QI EI+EVIELP+K+PELF+ +GI  PKGVLLYGPPGTGKTLLA+AVA  ++ TFI+V  SE  QK++GEG+R+VRE+F +AR  APSI
Sbjct:    5 LDSYRAKHYNSDDPIVRLLEEKIESLTKELEKLRQDLNWYKGELEKLLAPPYIEAIVLDILPDGKVIVRSSSGPNLIVNVSSNIDIKKLKPGSLVALTQRGSTIVEVLPEREDAYVKSFEVIEKPNVHYSDIGGLNEQINEIREVIELPLKNPELFKEIGIDPPKGVLLYGPPGTGKTLLAKAVATESNATFIQVVASEFAQKFVGEGARIVREVFELARRKAPSI 230          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PRS6B_YEAST (26S protease regulatory subunit 6B homolog OS=Saccharomyces cerevisiae GN=RPT3 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.378e-39
Identity = 87/218 (39.91%), Postives = 131/218 (60.09%), Query Frame = 3
Query:  177 IHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            + +L+ +    T   + ++ ++  L   ++  +EE++ +Q     +G+ ++ + +N  +V       YVV            PS  VAL   S  L  ILP   D  +++M   + PD TY  +GGLD Q +EI+E +ELP+   +L+E +GI  P+GVLLYGPPGTGKT+L +AVA+ T   FIRV+GSE V KY+GEG RMVR++F +ARE+APSI
Sbjct:   51 LKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQSVPLVIGQFLEPIDQNTGIVSSTTGMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSI 268          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PRS6B_MOUSE (26S protease regulatory subunit 6B OS=Mus musculus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.378e-39
Identity = 86/227 (37.89%), Postives = 131/227 (57.71%), Query Frame = 3
Query:  171 QHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLK-------EELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            + + +L  + ++    L  LE Q   +    + LK       EE++ +Q     +G+ ++ + +N  +V       Y V            P+  VAL   S  L  +LP   D  + ++  ++ PD  Y  IGG+D Q +E++E +ELP+ H EL++ +GI  P+GVL+YGPPG GKT+LA+AVAHHT   FIRV GSE VQKY+GEG RMVR++F +A+E+AP+I
Sbjct:   35 EDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVASTTGSNYYVRMVSTIDRELLKPNASVALHKHSNALVDVLPPAADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAI 261          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PRS6B_SCHPO (26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces pombe GN=rpt3 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 9.754e-39
Identity = 90/225 (40.00%), Postives = 132/225 (58.67%), Query Frame = 3
Query:  183 ELQLQVRQKT--HNLNRLEAQRNELNSRVRMLK-------EELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            E+ L  R K     L  L+ Q   +    + LK       EE++ +Q     +G+ ++ + +N  +V       YVV            PS  VAL+  S  L  ILP + D  +++++ ++ PD +Y  +GGLD Q +E++E +ELP+   +L+  +GI  P+GVLLYGPPGTGKT+L +AVA+ T   FIRV GSE VQKY+GEG RMVR++F MARE+AP+I
Sbjct:    6 EIDLYNRWKALERQLEMLDLQEGFIKEDCKSLKRELIRAQEEVKRIQSVPLVIGQFLEAIDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTAANFIRVVGSEFVQKYLGEGPRMVRDVFRMARENAPAI 230          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PRS6B_CAEEL (Probable 26S protease regulatory subunit 6B OS=Caenorhabditis elegans GN=rpt-3 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.664e-38
Identity = 86/223 (38.57%), Postives = 133/223 (59.64%), Query Frame = 3
Query:  168 LQHIHELQLQVRQKTHNLNR--LEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            L H+  ++  ++ +T NL +  L AQ            EE++ +Q     +G+ ++ + +N  +V       Y V            P   VAL   S  L  +LP + D  + +++ ++ PD +Y  IGGLD Q +E++E +ELP+ H EL++ +GI  P+GVL+YGPPG GKT+LA+AVA +T  +FIRV GSE VQKY+GEG RMVR++F +A+E++PSI
Sbjct:   47 LAHLQVMEDYIKLETRNLEKELLHAQ------------EEVKRIQSVPLVIGQFLEAVDQNHAIVGSTTGSNYYVRVLSILDRELLKPGCSVALHKYSNALVDVLPPEADSSIQMLRPDEKPDISYGDIGGLDMQKQEVREAVELPLTHGELYQQIGIDPPRGVLMYGPPGCGKTMLAKAVAANTAASFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPSI 257          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PRS4_YEAST (26S protease regulatory subunit 4 homolog OS=Saccharomyces cerevisiae GN=RPT2 PE=1 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 2.173e-38
Identity = 79/186 (42.47%), Postives = 120/186 (64.52%), Query Frame = 3
Query:  273 KEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            K++L+ ++     +G + +++  +  +V       Y V            P   V L + +  +  +L    DP+V++MK++K P  +Y  IGGL+ QI+EIKE +ELP+ HPEL+E +GI  PKGV+LYG PGTGKTLLA+AVA+ T  TF+R+ GSEL+QKY+G+G R+ R++F +A E+APSI
Sbjct:   93 KKQLEEIRGNPLSIGTLEEIIDDDHAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSI 278          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PSMR2_HALSA (Proteasome-activating nucleotidase 2 OS=Halobacterium salinarium GN=pan2 PE=3 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 2.838e-38
Identity = 85/228 (37.28%), Postives = 139/228 (60.96%), Query Frame = 3
Query:  156 RQYYLQHIHELQLQVRQKTHNLNRL---EAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            +Q  L+ + E    + ++    +RL    A+ N+   ++  L  E + L++   ++  V ++  +  V +K H   +  +            P +RVA+ N   V+   L  + D    +M+V+  PD  Y+ IGGLD Q++E++E +ELP+K P LFE++GI  P GVLL+GPPGTGKTL+A+AVA  TD +FI+++GSELV K+IGEG+++VR+LF +AR+H P++
Sbjct:   20 QQDKLEALEEQLSTLEEENEERDRLLDANAENNKYQQKLERLSHENKKLKQSPLFIATVQELTDEGAV-IKQHGNNQEALTEVTDELRATLEPGSRVAVNNSLSVVRQ-LDDEADVRARVMEVDDSPDVGYEDIGGLDDQLREVRETVELPMKDPGLFETVGINPPSGVLLHGPPGTGKTLMAKAVASQTDASFIKMAGSELVHKFIGEGAKLVRDLFQVARDHEPAV 245          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PRS4_ENCCU (26S protease regulatory subunit 4 homolog OS=Encephalitozoon cuniculi GN=RPT2 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.841e-38
Identity = 73/120 (60.83%), Postives = 99/120 (82.50%), Query Frame = 3
Query:  471 ILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            +L  ++DP+VN+MK+EK P  TY  IGGL++QI+EIKE +ELP+ +PEL++ +GI  PKGV+LYG PGTGKTLLA+AVA+ T  TF+RV G+EL+Q+Y+GEG ++VRELF +A  HAPSI
Sbjct:  146 VLEGEMDPMVNVMKLEKAPSETYADIGGLEEQIQEIKESVELPLTNPELYQEMGIKPPKGVILYGLPGTGKTLLAKAVANQTSATFLRVVGTELIQEYLGEGPKLVRELFRVADMHAPSI 265          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PRS10_DICDI (26S protease regulatory subunit S10B OS=Dictyostelium discoideum GN=psmC6 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 8.257e-38
Identity = 85/229 (37.12%), Postives = 132/229 (57.64%), Query Frame = 3
Query:  147 EGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXX-PSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            E  ++  LQ+  +  ++ +     LN+      +L    +  ++ ++ +Q  G  +GEV++ + + + +VK     +YVV             P  RV L   +  +  ILP +VDP++  M  E     +Y  IGGL  QI+E++EV+ELP+  PELF  +GI  PKGVLLYGPPGTGKTLLARA+A + +  F++V  S +V KYIGE +R++RE+F  AR+H P +
Sbjct:    5 ETKKEQALQNYRDRLIEHKNAELRLNKAHELIKKLKKDFQKTEDHIKTIQYIGEIIGEVLRSLDEERFIVKACNGPRYVVRCANYQDKAHLLVPGARVTLDLTTLTILKILPREVDPIIFNMTAESPGSVSYGEIGGLSNQIRELREVVELPLMIPELFIRVGIKAPKGVLLYGPPGTGKTLLARAIASNLEANFLKVVSSAIVDKYIGESARVIREMFGYARDHQPCV 233          
The following BLAST results are available for this feature:
BLAST of CX069560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 366
Match NameE-valueIdentityDescription
PRS6B_BOVIN3.352e-3937.8926S protease regulatory subunit 6B OS=Bos taurus G... [more]
PSMR_SULTO4.378e-3940.71Proteasome-activating nucleotidase OS=Sulfolobus t... [more]
PRS6B_YEAST4.378e-3939.9126S protease regulatory subunit 6B homolog OS=Sacc... [more]
PRS6B_MOUSE4.378e-3937.8926S protease regulatory subunit 6B OS=Mus musculus... [more]
PRS6B_SCHPO9.754e-3940.0026S protease regulatory subunit 6B homolog OS=Schi... [more]
PRS6B_CAEEL1.664e-3838.57Probable 26S protease regulatory subunit 6B OS=Cae... [more]
PRS4_YEAST2.173e-3842.4726S protease regulatory subunit 4 homolog OS=Sacch... [more]
PSMR2_HALSA2.838e-3837.28Proteasome-activating nucleotidase 2 OS=Halobacter... [more]
PRS4_ENCCU4.841e-3860.8326S protease regulatory subunit 4 homolog OS=Encep... [more]
PRS10_DICDI8.257e-3837.1226S protease regulatory subunit S10B OS=Dictyostel... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11C09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11C09-F17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069560 ID=CX069560; Name=CX069560; organism=Citrus sinensis; type=EST; length=832bp
GAGACTTGATCCGAAAGACAATTAGATTCGAACAAATCGAACTCGTTCAC
TCGGAAAGAATGGCCGCTGTAGGAATCGAAACGAAGCAGCCGGAATCGGC
GGCGCCAGAGGAGGTGTGTGCGGCGAAAGGAGCATCGAAACAAGGAGAGG
GATTGAGGCAATACTACCTCCAACACATTCACGAACTCCAGCTCCAAGTC
CGTCAAAAAACCCACAATCTCAATCGCCTCGAAGCCCAGCGTAACGAACT
CAATTCTAGAGTGCGGATGCTTAAAGAAGAATTACAGCTTCTTCAAGAGC
CTGGATCCTATGTCGGTGAAGTTGTTAAAGTTATGGGAAAAAATAAGGTT
CTTGTTAAGGTTCATCCTGAGGGGAAATATGTTGTTGATATTGATAAAAG
TATTGATATAACCAAGATCACTCCGTCAACAAGAGTTGCACTTCGTAATG
ACAGCTATGTTCTTCATTTGATCCTGCCAAGCAAAGTAGATCCCCTGGTC
AACCTTATGAAGGTTGAAAAGGTCCCTGATTCTACATATGACATGATTGG
TGGCCTTGATCAGCAAATTAAGGAGATCAAGGAGGTCATTGAGCTTCCTA
TCAAACATCCCGAATTGTTCGAGTCTCTTGGAATAGCTCAACCCAAGGGT
GTATTGCTATATGGACCACCTGGTACTGGCAAAACACTGTTGGCTAGAGC
TGTGGCTCATCATACTGATTGTACTTTCATCAGGGTTTCTGGTTCTGAAT
TAGTCCAGAAATACATTGGAGAAGGCTCCAGAATGGTTAGAGAACTTTTT
GTTATGGCAAGGGAACATGCTCCGTCTATCAT
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