CX069559

Overview
NameCX069559
Unique NameCX069559
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PSMR_ARCFU (Proteasome-activating nucleotidase OS=Archaeoglobus fulgidus GN=pan PE=1 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 2.463e-70
Identity = 134/214 (62.62%), Postives = 166/214 (77.57%), Query Frame = -3
Query:  234 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKET 875
            PKGVLLYGPPGTGKTLLA+AVA+ T  TFIRV GSE VQKYIGEG+R+VRE+F +A+E APSIIF+DE+D+I + R  S + +GD EVQRTM++LL +LDGF+    +KV+ ATNRIDILD A+LRPGR DR IE P P  E R+ I KIH+R+M L   +D K++A    GASGA++KA+CTEAGMFA+RE R  VT  DF  A+ KV+KK T
Sbjct:  175 PKGVLLYGPPGTGKTLLAKAVANQTRATFIRVVGSEFVQKYIGEGARLVREVFQLAKEKAPSIIFIDELDAIAARRTNSDT-SGDREVQRTMMQLLAELDGFDPRGDVKVIGATNRIDILDPAILRPGRFDRIIEVPLPTFEGRIQIFKIHTRKMKLAEDVDFKELARITEGASGADIKAICTEAGMFAIREERAKVTMLDFTKAIEKVLKKTT 387          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PRS4_RAT (26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1 PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 2.463e-70
Identity = 130/215 (60.47%), Postives = 171/215 (79.53%), Query Frame = -3
Query:  231 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETE 875
            PKGV+LYGPPGTGKTLLA+AVA+ T  TF+RV GSEL+QKY+G+G ++VRELF +A EHAPSI+F+DEID+IG+ R +S SG G+ E+QRTMLELLNQLDGF++   +KV+MATNRI+ LD AL+RPGRIDRKIEFP P+E+++  I +IH+ RM L   + L  +    +  SGA++KA+CTEAG+ ALRERR+ VT EDF+ +   V+ K+ E
Sbjct:  219 PKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSG-GEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQE 432          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PRS4_MOUSE (26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 2.463e-70
Identity = 130/215 (60.47%), Postives = 171/215 (79.53%), Query Frame = -3
Query:  231 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETE 875
            PKGV+LYGPPGTGKTLLA+AVA+ T  TF+RV GSEL+QKY+G+G ++VRELF +A EHAPSI+F+DEID+IG+ R +S SG G+ E+QRTMLELLNQLDGF++   +KV+MATNRI+ LD AL+RPGRIDRKIEFP P+E+++  I +IH+ RM L   + L  +    +  SGA++KA+CTEAG+ ALRERR+ VT EDF+ +   V+ K+ E
Sbjct:  219 PKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSG-GEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQE 432          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PRS4_HUMAN (26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 2.463e-70
Identity = 130/215 (60.47%), Postives = 171/215 (79.53%), Query Frame = -3
Query:  231 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETE 875
            PKGV+LYGPPGTGKTLLA+AVA+ T  TF+RV GSEL+QKY+G+G ++VRELF +A EHAPSI+F+DEID+IG+ R +S SG G+ E+QRTMLELLNQLDGF++   +KV+MATNRI+ LD AL+RPGRIDRKIEFP P+E+++  I +IH+ RM L   + L  +    +  SGA++KA+CTEAG+ ALRERR+ VT EDF+ +   V+ K+ E
Sbjct:  219 PKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSG-GEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQE 432          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PSMR_PYRKO (Proteasome-activating nucleotidase OS=Pyrococcus kodakaraensis GN=pan PE=3 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 3.217e-70
Identity = 133/213 (62.44%), Postives = 174/213 (81.69%), Query Frame = -3
Query:  237 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKE 875
            PKGVLLYGPPG GKTL+A+AVA+H + TFIRV GSELV+K+IGEG+R+V ELF +A+E AP+IIF+DEID+IG+ RM+  +G G+ EV RT+++LL ++DGF+    +KV+ ATNR DILD ALLRPGR DR IE P P+ + RL+ILK+H+R+MNL +G+DL+ IAE   GASGA+LKA+ TEAGMFA+R+RR +VTQ+DF  AV KV+  E
Sbjct:  172 PKGVLLYGPPGCGKTLMAKAVANHVNATFIRVVGSELVRKFIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTG-GEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDYQGRLEILKVHTRKMNL-KGVDLRVIAEITEGASGADLKAIATEAGMFAIRDRRTYVTQDDFLKAVDKVIGSE 382          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PSMR_PYRAB (Proteasome-activating nucleotidase OS=Pyrococcus abyssi GN=pan PE=3 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 3.217e-70
Identity = 135/213 (63.38%), Postives = 171/213 (80.28%), Query Frame = -3
Query:  237 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKE 875
            PKGVLLYGPPG GKTL+A+A+AH  + TFIRV GSELV+KYIGEG+R+V ELF +A+E AP+IIF+DEID+IG+ RM+  +G G+ EV RT+++LL ++DGF+    +KV+ ATNR DILD ALLRPGR DR IE P P+ E RL+ILK+H+RRM L + +DL+ IAE   GASGA+LKA+ TEAGMFA+RERR +VTQEDF  AV KV+  E
Sbjct:  174 PKGVLLYGPPGCGKTLMAKALAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTG-GEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFEGRLEILKVHTRRMKL-KNVDLRVIAEITEGASGADLKAIATEAGMFAIRERRTYVTQEDFLKAVDKVLGNE 384          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PRS4_CHICK (26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 3.217e-70
Identity = 129/215 (60.00%), Postives = 171/215 (79.53%), Query Frame = -3
Query:  231 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETE 875
            PKGV+LYGPPGTGKTLLA+AVA+ T  TF+RV GSEL+QKY+G+G ++VRELF +A EH PSI+F+DEID+IG+ R +S SG G+ E+QRTMLELLNQLDGF++   +KV+MATNRI+ LD AL+RPGRIDRKIEFP P+E+++  I +IH+ RM L   + L ++    +  SGA++KA+CTEAG+ ALRERR+ VT EDF+ +    + K+TE
Sbjct:  219 PKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHGPSIVFIDEIDAIGTKRYDSNSG-GEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENFLYKKTE 432          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PSMR_THEGJ (Proteasome-activating nucleotidase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=pan PE=3 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.597e-69
Identity = 134/213 (62.91%), Postives = 171/213 (80.28%), Query Frame = -3
Query:  237 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKE 875
            PKGVLLYGPPG GKTL+A+AVA+H + TFIRV GSELV+K+IGEG+R+V ELF MA+E AP+IIF+DEID+IG+ RM+  +G G+ EV RT+++LL ++DGF+    +KV+ ATNR DILD ALLRPGR DR IE P P+   RL+ILK+H+R+MNL R +DL  IA+   GASGA+LKA+ TEAGMFA+R+RR +VTQEDF  AV KV+  E
Sbjct:  172 PKGVLLYGPPGCGKTLMAKAVANHVNATFIRVVGSELVRKFIGEGARLVHELFEMAKEKAPTIIFIDEIDAIGAKRMDETTG-GEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFRGRLEILKVHTRKMNL-RNVDLSIIADITEGASGADLKAIATEAGMFAIRDRRTYVTQEDFLKAVDKVLGAE 382          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PRS7_PRUPE (26S protease regulatory subunit 7 OS=Prunus persica GN=RPT1 PE=2 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.597e-69
Identity = 136/211 (64.45%), Postives = 164/211 (77.73%), Query Frame = -3
Query:  243 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 875
            PKGVL YGPPGTGKTLLARAVA+ TD  FIRV GSELVQKY+GEG+RMVRELF MAR     I+F DE+D+IG AR + G G GD+EVQRTMLE++NQLDGF+A   IKVLMATNR D LD ALLRPGR+DRK+EF  P+ ESR  I KIH+R MN  R I  + +A     ++GA++++VCTEAGM+A+R RR  VT++DF  AV KV+K
Sbjct:  201 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVG-GDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIK 410          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PRS7A_ARATH (26S protease regulatory subunit 7 homolog A OS=Arabidopsis thaliana GN=RPT1A PE=2 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.597e-69
Identity = 136/211 (64.45%), Postives = 164/211 (77.73%), Query Frame = -3
Query:  243 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 875
            PKGVL YGPPGTGKTLLARAVA+ TD  FIRV GSELVQKY+GEG+RMVRELF MAR     I+F DE+D+IG AR + G G GD+EVQRTMLE++NQLDGF+A   IKVLMATNR D LD ALLRPGR+DRK+EF  P+ ESR  I KIH+R MN  R I  + +A     ++GA++++VCTEAGM+A+R RR  VT++DF  AV KV+K
Sbjct:  202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVG-GDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIK 411          
The following BLAST results are available for this feature:
BLAST of CX069559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 389
Match NameE-valueIdentityDescription
PSMR_ARCFU2.463e-7062.62Proteasome-activating nucleotidase OS=Archaeoglobu... [more]
PRS4_RAT2.463e-7060.4726S protease regulatory subunit 4 OS=Rattus norveg... [more]
PRS4_MOUSE2.463e-7060.4726S protease regulatory subunit 4 OS=Mus musculus ... [more]
PRS4_HUMAN2.463e-7060.4726S protease regulatory subunit 4 OS=Homo sapiens ... [more]
PSMR_PYRKO3.217e-7062.44Proteasome-activating nucleotidase OS=Pyrococcus k... [more]
PSMR_PYRAB3.217e-7063.38Proteasome-activating nucleotidase OS=Pyrococcus a... [more]
PRS4_CHICK3.217e-7060.0026S protease regulatory subunit 4 OS=Gallus gallus... [more]
PSMR_THEGJ1.597e-6962.91Proteasome-activating nucleotidase OS=Thermococcus... [more]
PRS7_PRUPE1.597e-6964.4526S protease regulatory subunit 7 OS=Prunus persic... [more]
PRS7A_ARATH1.597e-6964.4526S protease regulatory subunit 7 homolog A OS=Ara... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_11C09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11C09-F17-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069559 ID=CX069559; Name=CX069559; organism=Citrus sinensis; type=EST; length=907bp
CTTGCATGCGAATTTAAATTTAGATAAAATAGATTGCAAATTTGTTTATC
ATAAGAGGCTAGAGCGCAAGAAAAGACAACAGTCAGGCTAAAAGGGCCTA
TCGTGCAAATGTCCCAGAACACGAGTGAGTGCCGTTAAGGACTACTTGAA
TCTTGCTCAGAAAATAAGCAAATACACAGCACAGCACATGGAAATGATTA
CTTCCACAACTTCCGCAAGGACATGTTCTTCTCTGTTTCTTTCTTCATGA
CCTTGGCCACTGCCATCTCAAAATCTTCCTGTGTTACATGGATCCTTCTC
TCTCTTAGAGCAAACATACCGGCTTCTGTGCACACAGCCTTAAGCTCCGC
ACCAGATGCACCATTCATCTTCTCGGCAATCTTCTTCAAATCAATGCCAC
GCATTAAATTCATTCTTCTTGAATGAATTTTTAGGATATCAAGACGAGAC
TCTTCATTAGGATTTGGAAATTCAATCTTTCTGTCAATTCGTCCTGGCCT
GAGAAGAGCTTGATCGAGAATATCAATTCGATTTGTCGCCATGAGAACCT
TAATTTTGTTTGATGCTTCAAATCCATCAAGCTGGTTGAGCAGCTCCAGC
ATAGTCCTCTGCACCTCACTGTCACCATTTCCGCTGCCAGATTCCATTCG
GGCAGATCCGATACTGTCAATTTCATCCATAAAAATGATAGACGGAGCAT
GTTCCCTTGCCATAACAAAAAGTTCTCTAACCATTCTGGAGCCTTCTCCA
ATGTATTTCTGGACTAATTCAGAACCAGAAACCCTGATGAAAGTACAATC
AGTATGATGAGCCACAGCTCTAGCCAACAGTGTTTTGCCAGTACCAGGTG
GTCCATATAGCAATACACCCTTNGGGTTGAGCTATTCCAAGAGACTCGAA
CAATTCG
back to top