CX069559

Overview
NameCX069559
Unique NameCX069559
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: SPAST_DANRE (Spastin OS=Danio rerio GN=spast PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 3.845e-31
Identity = 81/194 (41.75%), Postives = 123/194 (63.40%), Query Frame = -3
Query:  300 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLM--ATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILK-IHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE 872
            +G+LL+GPPG GKT+LA+AVA  ++ TF  +S + L  KY+GEG ++VR LF +ARE  PSIIF+DEIDS+   R E   G  D+  +R   E L + DG ++    +VL+  ATNR   LD+A+LR  R  ++I    P EE+RL +LK + S+  N +   +L ++A   +G SG++L ++  +A +  +RE
Sbjct:  329 RGLLLFGPPGNGKTMLAKAVAMESNATFFNISAATLTSKYVGEGEKLVRALFAVARELQPSIIFIDEIDSLLCERRE---GEHDAS-RRLKTEFLIEFDGVQSGGDERVLVMGATNRPQELDEAVLR--RFAKRIYVALPTEETRLKLLKNLLSKHRNPLSQKELSQLARLTDGYSGSDLTSLAKDAALGPIRE 516          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: SPAST_ANOGA (Spastin OS=Anopheles gambiae GN=spas PE=3 SV=5)

HSP 1 Score: 135.576 bits (340), Expect = 3.845e-31
Identity = 82/239 (34.31%), Postives = 134/239 (56.07%), Query Frame = -3
Query:  204 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEA---SNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESR-LDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIH------------VTQEDFEMAVAKVMKKETEKNMSLRKLW 872
            KG+LL+GPPG GKTLLARAVA     TF  +S + L  KY+G+G ++VR LF +ARE  PSIIF+DE+DS+ S R    S N     +R   E L Q DG  A   +++I V+ ATNR   LD+A LR  R  +++    P+ ++R L + ++  ++ + +   DL  +A+   G SG++L A+  +A +  +RE  +             + + DF  ++ ++ +    ++++  + W
Sbjct:  537 KGLLLFGPPGNGKTLLARAVATECSATFFSISAATLTSKYVGDGEKLVRALFAVARELQPSIIFIDEVDSVLSER----SSNEHEATRRLKTEFLVQFDGLPANSEADRIVVMAATNRPQELDEAALR--RFPKRVYVTLPDRDTRELLLRRLLQKQGSPLSDADLAHLAQLTEGYSGSDLTALARDAALEPIRELNVEEVKNMDPTKLRSIRESDFHNSLKRIRRSVAPQSLAAYEKW 769          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: NSF_RAT (Vesicle-fusing ATPase OS=Rattus norvegicus GN=Nsf PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 5.021e-31
Identity = 87/224 (38.84%), Postives = 129/224 (57.59%), Query Frame = -3
Query:  243 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRV-SGSELVQKYIGEGSRMVRELFVMAREHAPS--------IIFMDEIDSIGSARMESGSGNGDSEVQRTML-ELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMN----LMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 872
            KG+LLYGPPG GKTLLAR +    +    +V +G E++ KY+GE    +R+LF  A E            II  DEID+I   R   GS  G + V  T++ +LL+++DG E  N I V+  TNR D++D+ALLRPGR++ K+E   P+E+ RL IL IH+ RM     L   +D+K++A +    SGAEL+ +   A   A+       T+ + +M  A+ ++
Sbjct:  254 KGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQR---GSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAVETKNFSGAELEGLVRAAQSTAMNRHIKASTKVEVDMEKAESLQ 474          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: NSF_PONAB (Vesicle-fusing ATPase OS=Pongo abelii GN=NSF PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 5.021e-31
Identity = 87/224 (38.84%), Postives = 129/224 (57.59%), Query Frame = -3
Query:  243 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRV-SGSELVQKYIGEGSRMVRELFVMAREHAPS--------IIFMDEIDSIGSARMESGSGNGDSEVQRTML-ELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMN----LMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 872
            KG+LLYGPPG GKTLLAR +    +    +V +G E++ KY+GE    +R+LF  A E            II  DEID+I   R   GS  G + V  T++ +LL+++DG E  N I V+  TNR D++D+ALLRPGR++ K+E   P+E+ RL IL IH+ RM     L   +D+K++A +    SGAEL+ +   A   A+       T+ + +M  A+ ++
Sbjct:  254 KGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQR---GSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAMETKNFSGAELEGLVRAAQSTAMNRHIKASTKVEVDMEKAESLQ 474          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: NSF_MOUSE (Vesicle-fusing ATPase OS=Mus musculus GN=Nsf PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 5.021e-31
Identity = 87/224 (38.84%), Postives = 129/224 (57.59%), Query Frame = -3
Query:  243 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRV-SGSELVQKYIGEGSRMVRELFVMAREHAPS--------IIFMDEIDSIGSARMESGSGNGDSEVQRTML-ELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMN----LMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 872
            KG+LLYGPPG GKTLLAR +    +    +V +G E++ KY+GE    +R+LF  A E            II  DEID+I   R   GS  G + V  T++ +LL+++DG E  N I V+  TNR D++D+ALLRPGR++ K+E   P+E+ RL IL IH+ RM     L   +D+K++A +    SGAEL+ +   A   A+       T+ + +M  A+ ++
Sbjct:  254 KGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQR---GSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAVETKNFSGAELEGLVRAAQSTAMNRHIKASTKVEVDMEKAESLQ 474          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: NSF_HUMAN (Vesicle-fusing ATPase OS=Homo sapiens GN=NSF PE=1 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 5.021e-31
Identity = 87/224 (38.84%), Postives = 129/224 (57.59%), Query Frame = -3
Query:  243 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRV-SGSELVQKYIGEGSRMVRELFVMAREHAPS--------IIFMDEIDSIGSARMESGSGNGDSEVQRTML-ELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMN----LMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 872
            KG+LLYGPPG GKTLLAR +    +    +V +G E++ KY+GE    +R+LF  A E            II  DEID+I   R   GS  G + V  T++ +LL+++DG E  N I V+  TNR D++D+ALLRPGR++ K+E   P+E+ RL IL IH+ RM     L   +D+K++A +    SGAEL+ +   A   A+       T+ + +M  A+ ++
Sbjct:  254 KGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQR---GSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAVETKNFSGAELEGLVRAAQSTAMNRHIKASTKVEVDMEKAESLQ 474          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: NSF_CRIGR (Vesicle-fusing ATPase OS=Cricetulus griseus GN=NSF PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 5.021e-31
Identity = 87/224 (38.84%), Postives = 129/224 (57.59%), Query Frame = -3
Query:  243 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRV-SGSELVQKYIGEGSRMVRELFVMAREHAPS--------IIFMDEIDSIGSARMESGSGNGDSEVQRTML-ELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMN----LMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 872
            KG+LLYGPPG GKTLLAR +    +    +V +G E++ KY+GE    +R+LF  A E            II  DEID+I   R   GS  G + V  T++ +LL+++DG E  N I V+  TNR D++D+ALLRPGR++ K+E   P+E+ RL IL IH+ RM     L   +D+K++A +    SGAEL+ +   A   A+       T+ + +M  A+ ++
Sbjct:  254 KGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQR---GSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAVETKNFSGAELEGLVRAAQSTAMNRHIKASTKVEVDMEKAESLQ 474          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: SPAST_DROAN (Spastin OS=Drosophila ananassae GN=spas PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.558e-31
Identity = 81/239 (33.89%), Postives = 137/239 (57.32%), Query Frame = -3
Query:  204 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS---NKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESR-LDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIH------------VTQEDFEMAVAKVMKKETEKNMSLRKLW 872
            KG+LL+GPPG GKTLLARAVA     TF+ +S + L  KY+G+G ++VR LF +AR   PSIIF+DE+DS+ S R    S N     +R   E L + DG   +   ++I VL ATNR   LD+A LR  R  +++    P+E++R L + ++  ++ + +    L+++A+  +G SG++L A+  +A +  +RE  +             +T+ DF  ++ ++ +    ++++  + W
Sbjct:  529 KGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSER----SSNEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLSRLLQKQGSPLDTEALRRLAKTTDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITESDFHSSLKRIRRSVAPQSLNSYEKW 761          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PEX6_PICPA (Peroxisomal biogenesis factor 6 OS=Pichia pastoris GN=PEX6 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.558e-31
Identity = 76/193 (39.38%), Postives = 117/193 (60.62%), Query Frame = -3
Query:  306 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGF---EASNKIKVLMATNRIDILDQALLRPGRIDRKIEF-PNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGA-SGAELKAVCTEAGMFAL 869
            G+L YGPPGTGKTLLA+A+A +    F  V G EL+  YIGE    VR++F  AR+  P ++F DE+DS+   R     G+ +  + R + +LL +LDG    +  + + V+ ATNR D+LD+ALLRPGR D+ +    +   E +  I++  SR+ +L   +DL K+AE      +GA+  A+C++A + A+
Sbjct:  854 GILFYGPPGTGKTLLAKAIATNFALNFFSVKGPELLNMYIGESEANVRKVFQRARDAKPCVVFFDELDSVAPKR--GNQGDSEGVMDRIVSQLLAELDGMSGGDGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGVSDTHEKQSKIMEALSRKFHLHPSVDLDKVAESCPFTFTGADFYALCSDAMLNAM 1044          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: FIGL1_MOUSE (Fidgetin-like protein 1 OS=Mus musculus GN=Fignl1 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.558e-31
Identity = 84/245 (34.29%), Postives = 135/245 (55.10%), Query Frame = -3
Query:  186 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLM--ATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDIL-KIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALR------------ERRIHVTQEDFEMAVAKVMKKETEKNMSLRKLWK*SFPC 875
            PKG+LL+GPPGTGKTL+ + +A  +  TF  +S S L  K++GEG +MVR LF +AR   P++IF+DEIDS+ S R   G G  +S  +R   E L QLDG   S++ ++L+  ATNR   +D+A  R  R+ +++  P P   +R  I+  + S+    +   +   + ++ +G SGA++  +C EA +  +R            ++   +   DFE A   V    + K++ L + W  +F C
Sbjct:  443 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQR---GDGEHESS-RRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVGNLMSKEQCCLSDEETDLVVQQSDGFSGADMTQLCREASLGPIRSLHAADIATISPDQVRPIAYIDFENAFKTVRPTVSPKDLELYENWNETFGC 681          
The following BLAST results are available for this feature:
BLAST of CX069559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 389
Match NameE-valueIdentityDescription
SPAST_DANRE3.845e-3141.75Spastin OS=Danio rerio GN=spast PE=2 SV=2[more]
SPAST_ANOGA3.845e-3134.31Spastin OS=Anopheles gambiae GN=spas PE=3 SV=5[more]
NSF_RAT5.021e-3138.84Vesicle-fusing ATPase OS=Rattus norvegicus GN=Nsf ... [more]
NSF_PONAB5.021e-3138.84Vesicle-fusing ATPase OS=Pongo abelii GN=NSF PE=2 ... [more]
NSF_MOUSE5.021e-3138.84Vesicle-fusing ATPase OS=Mus musculus GN=Nsf PE=1 ... [more]
NSF_HUMAN5.021e-3138.84Vesicle-fusing ATPase OS=Homo sapiens GN=NSF PE=1 ... [more]
NSF_CRIGR5.021e-3138.84Vesicle-fusing ATPase OS=Cricetulus griseus GN=NSF... [more]
SPAST_DROAN6.558e-3133.89Spastin OS=Drosophila ananassae GN=spas PE=3 SV=1[more]
PEX6_PICPA6.558e-3139.38Peroxisomal biogenesis factor 6 OS=Pichia pastoris... [more]
FIGL1_MOUSE6.558e-3134.29Fidgetin-like protein 1 OS=Mus musculus GN=Fignl1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11C09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11C09-F17-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069559 ID=CX069559; Name=CX069559; organism=Citrus sinensis; type=EST; length=907bp
CTTGCATGCGAATTTAAATTTAGATAAAATAGATTGCAAATTTGTTTATC
ATAAGAGGCTAGAGCGCAAGAAAAGACAACAGTCAGGCTAAAAGGGCCTA
TCGTGCAAATGTCCCAGAACACGAGTGAGTGCCGTTAAGGACTACTTGAA
TCTTGCTCAGAAAATAAGCAAATACACAGCACAGCACATGGAAATGATTA
CTTCCACAACTTCCGCAAGGACATGTTCTTCTCTGTTTCTTTCTTCATGA
CCTTGGCCACTGCCATCTCAAAATCTTCCTGTGTTACATGGATCCTTCTC
TCTCTTAGAGCAAACATACCGGCTTCTGTGCACACAGCCTTAAGCTCCGC
ACCAGATGCACCATTCATCTTCTCGGCAATCTTCTTCAAATCAATGCCAC
GCATTAAATTCATTCTTCTTGAATGAATTTTTAGGATATCAAGACGAGAC
TCTTCATTAGGATTTGGAAATTCAATCTTTCTGTCAATTCGTCCTGGCCT
GAGAAGAGCTTGATCGAGAATATCAATTCGATTTGTCGCCATGAGAACCT
TAATTTTGTTTGATGCTTCAAATCCATCAAGCTGGTTGAGCAGCTCCAGC
ATAGTCCTCTGCACCTCACTGTCACCATTTCCGCTGCCAGATTCCATTCG
GGCAGATCCGATACTGTCAATTTCATCCATAAAAATGATAGACGGAGCAT
GTTCCCTTGCCATAACAAAAAGTTCTCTAACCATTCTGGAGCCTTCTCCA
ATGTATTTCTGGACTAATTCAGAACCAGAAACCCTGATGAAAGTACAATC
AGTATGATGAGCCACAGCTCTAGCCAACAGTGTTTTGCCAGTACCAGGTG
GTCCATATAGCAATACACCCTTNGGGTTGAGCTATTCCAAGAGACTCGAA
CAATTCG
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