CX069559

Overview
NameCX069559
Unique NameCX069559
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: SEC18_CANAL (Vesicular-fusion protein SEC18 OS=Candida albicans GN=SEC18 PE=3 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 4.399e-27
Identity = 73/233 (31.33%), Postives = 126/233 (54.08%), Query Frame = -3
Query:  258 KGVLLYGPPGTGKTLLARAVAHHTDCTFIR-VSGSELVQKYIGEGSRMVRELF--------VMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMN----LMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRER---------------RIHVTQEDFEMAV 872
            KG+LLYGPPGTGKTL+AR ++   +    + V+G E++ KY+G     +R LF        +   +    +I  DE+DS+   R  SG  +G       + +LL+++DG +  N I V+  TNR+D++D ALLRPGR + +IE   P+E+ R DI  IH++++     L   ++  +++      +GAE++ +C  A  +A+                  ++ +T++DF +A+
Sbjct:  311 KGLLLYGPPGTGKTLIARKLSKMLNGKEPKIVNGPEMLSKYVGASEENIRNLFKDAEAEYKLKGEDSDLHVIIFDELDSVFKQR-GSGKSDGTGVGDNVVNQLLSKMDGVDQLNNILVIGMTNRLDLIDTALLRPGRFEIQIEISLPDEKGRKDIFLIHTKKLTENGILSSDVNFDELSTLTKNFTGAEIEGLCNSAKSYAISRHTKKGALAQIDPESIAKMKITRDDFLLAL 542          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: MPA_MYCTU (Proteasome-associated ATPase OS=Mycobacterium tuberculosis GN=mpa PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.503e-27
Identity = 79/202 (39.11%), Postives = 116/202 (57.43%), Query Frame = -3
Query:  333 PKGVLLYGPPGTGKTLLARAVA---------------HHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHA----PSIIFMDEIDSIGSARMESGSGNG-DSEVQRTML-ELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAV 875
            PKGVLLYGPPG GKTL+A+AVA               H     F+ + G EL+ K++GE  R +R +F  ARE A    P I+F DE+DSI   R     G G  S+V+ T++ +LL+++DG E    + V+ A+NR D++D A+LRPGR+D KI+   P+ E+  D   I+S+ +     +    +AE  +G   A +KA+
Sbjct:  286 PKGVLLYGPPGCGKTLIAKAVANSLAKKMAEVRGDDAHEAKSYFLNIKGPELLNKFVGETERHIRLIFQRAREKASEGTPVIVFFDEMDSIFRTR-----GTGVSSDVETTVVPQLLSEIDGVEGLENVIVIGASNREDMIDPAILRPGRLDVKIKIERPDAEAAQD---IYSKYLTEFLPVHADDLAE-FDGDRSACIKAM 478          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: MPA_MYCBO (Proteasome-associated ATPase OS=Mycobacterium bovis GN=mpa PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.503e-27
Identity = 79/202 (39.11%), Postives = 116/202 (57.43%), Query Frame = -3
Query:  333 PKGVLLYGPPGTGKTLLARAVA---------------HHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHA----PSIIFMDEIDSIGSARMESGSGNG-DSEVQRTML-ELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAV 875
            PKGVLLYGPPG GKTL+A+AVA               H     F+ + G EL+ K++GE  R +R +F  ARE A    P I+F DE+DSI   R     G G  S+V+ T++ +LL+++DG E    + V+ A+NR D++D A+LRPGR+D KI+   P+ E+  D   I+S+ +     +    +AE  +G   A +KA+
Sbjct:  286 PKGVLLYGPPGCGKTLIAKAVANSLAKKMAEVRGDDAHEAKSYFLNIKGPELLNKFVGETERHIRLIFQRAREKASEGTPVIVFFDEMDSIFRTR-----GTGVSSDVETTVVPQLLSEIDGVEGLENVIVIGASNREDMIDPAILRPGRLDVKIKIERPDAEAAQD---IYSKYLTEFLPVHADDLAE-FDGDRSACIKAM 478          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: VPS4_YEAST (Vacuolar protein sorting-associated protein 4 OS=Saccharomyces cerevisiae GN=VPS4 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.799e-27
Identity = 77/193 (39.90%), Postives = 116/193 (60.10%), Query Frame = -3
Query:  300 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTM-LELLNQLDGF-EASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIH-SRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE 869
            G+LLYGPPGTGK+ LA+AVA   + TF  VS S+LV K++GE  ++V++LF MARE+ PSIIF+DE+D++   R     G G+SE  R +  ELL Q++G    S  + VL ATN    LD A+ R  R +R+I  P P+  +R  + +I+      ++   D + +     G SG+++  V  +A M  +R+
Sbjct:  168 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTR-----GEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 353          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: VPS4A_RAT (Vacuolar protein sorting-associated protein 4A OS=Rattus norvegicus GN=Vps4a PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.280e-26
Identity = 72/194 (37.11%), Postives = 116/194 (59.79%), Query Frame = -3
Query:  300 KGVLLYGPPGTGKTLLARAVAHHTD-CTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNK-IKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIH-SRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE 872
            +G+LL+GPPGTGK+ LA+AVA   +  TF  VS S+L+ K++GE  ++V+ LF +AR+H PSIIF+DE+DS+  +R E    N     +R   E L Q+ G   +N    VL ATN   +LD A+ R  R +++I  P P E +R  + ++H     + +   ++ ++A K  G SGA++  +  ++ M  +R+
Sbjct:  161 RGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNE----NESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADISIIVRDSLMQPVRK 348          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: VPS4A_MOUSE (Vacuolar protein sorting-associated protein 4A OS=Mus musculus GN=Vps4a PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.280e-26
Identity = 72/194 (37.11%), Postives = 116/194 (59.79%), Query Frame = -3
Query:  300 KGVLLYGPPGTGKTLLARAVAHHTD-CTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNK-IKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIH-SRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE 872
            +G+LL+GPPGTGK+ LA+AVA   +  TF  VS S+L+ K++GE  ++V+ LF +AR+H PSIIF+DE+DS+  +R E    N     +R   E L Q+ G   +N    VL ATN   +LD A+ R  R +++I  P P E +R  + ++H     + +   ++ ++A K  G SGA++  +  ++ M  +R+
Sbjct:  161 RGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNE----NESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADISIIVRDSLMQPVRK 348          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: VPS4A_HUMAN (Vacuolar protein sorting-associated protein 4A OS=Homo sapiens GN=VPS4A PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.280e-26
Identity = 72/194 (37.11%), Postives = 116/194 (59.79%), Query Frame = -3
Query:  300 KGVLLYGPPGTGKTLLARAVAHHTD-CTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNK-IKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIH-SRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE 872
            +G+LL+GPPGTGK+ LA+AVA   +  TF  VS S+L+ K++GE  ++V+ LF +AR+H PSIIF+DE+DS+  +R E    N     +R   E L Q+ G   +N    VL ATN   +LD A+ R  R +++I  P P E +R  + ++H     + +   ++ ++A K  G SGA++  +  ++ M  +R+
Sbjct:  161 RGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNE----NESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADISIIVRDSLMQPVRK 348          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: MPA_RHOER (Proteasome-associated ATPase OS=Rhodococcus erythropolis GN=mpa PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.280e-26
Identity = 73/167 (43.71%), Postives = 102/167 (61.08%), Query Frame = -3
Query:  435 PKGVLLYGPPGTGKTLLARAVAHH---------------TDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHA----PSIIFMDEIDSIGSARMESGSGNGDSEVQRTML-ELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDI 875
            PKGVLLYGPPG GKTL+A+AVA+                    F+ + G EL+ K++GE  R +R +F  ARE A    P I+F DE+DSI   R   GSG   S+V+ T++ +LL+++DG E    + V+ A+NR D++D A+LRPGR+D KI+   P+ ES  DI
Sbjct:  268 PKGVLLYGPPGCGKTLIAKAVANSLAKKIAEARGQDSKDAKSYFLNIKGPELLNKFVGETERHIRMIFQRAREKASEGTPVIVFFDEMDSIFRTR---GSGVS-SDVETTVVPQLLSEIDGVEGLENVIVIGASNREDMIDPAILRPGRLDVKIKIERPDAESAQDI 430          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: YJNA_SCHPO (Uncharacterized AAA domain-containing protein C24B10.10c OS=Schizosaccharomyces pombe GN=SPCC24B10.10c PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.851e-26
Identity = 71/193 (36.79%), Postives = 107/193 (55.44%), Query Frame = -3
Query:  300 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDG-FEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE 875
            PKG+LLYGPPG GKT+LA+A+A  +  TFI VS   L  K+ GE +++V  LF +AR+  P+IIF+DEID+    R  +        + +   E ++  DG     +++ VL ATNR   +D+A+ R  R+ +    P PN E R  IL+++ +++ L    D   +     G SG+ +K VC  A     RE
Sbjct:  125 PKGLLLYGPPGCGKTMLAKALAKQSQATFINVSVGLLTDKWFGESNKLVDALFTLARKLEPTIIFIDEIDTFLRQRQRT----DHEAMAQIKAEFMSMWDGLLSGQSRVLVLGATNRPADIDEAIRR--RMPKVFSIPLPNAEQRRKILELYLKKVPLEANFDWNGVVNATAGLSGSYIKEVCRSALSVPRRE 311          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: MSP1_YEAST (Protein MSP1 OS=Saccharomyces cerevisiae GN=MSP1 PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 2.851e-26
Identity = 72/194 (37.11%), Postives = 110/194 (56.70%), Query Frame = -3
Query:  300 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTM-LELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRG-IDLKKIAEKMNGASGAELKAVCTEAGMFALRE 875
            P GVLLYGPPG GKT+LA+A+A  +   FI +  S ++ K+ GE +++V  +F +A +  P IIF+DEIDS    R  +     D EV  T+  E +   DG   + ++ ++ ATNRI+ +D A LR  R+ ++     P  + R  IL +  +   L     DL+ IA+   G SG++LK +C EA + A +E
Sbjct:  126 PSGVLLYGPPGCGKTMLAKALAKESGANFISIRMSSIMDKWYGESNKIVDAMFSLANKLQPCIIFIDEIDSFLRERSST-----DHEVTATLKAEFMTLWDGLLNNGRVMIIGATNRINDIDDAFLR--RLPKRFLVSLPGSDQRYKILSVLLKDTKLDEDEFDLQLIADNTKGFSGSDLKELCREAALDAAKE 312          
The following BLAST results are available for this feature:
BLAST of CX069559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 389
Match NameE-valueIdentityDescription
SEC18_CANAL4.399e-2731.33Vesicular-fusion protein SEC18 OS=Candida albicans... [more]
MPA_MYCTU7.503e-2739.11Proteasome-associated ATPase OS=Mycobacterium tube... [more]
MPA_MYCBO7.503e-2739.11Proteasome-associated ATPase OS=Mycobacterium bovi... [more]
VPS4_YEAST9.799e-2739.90Vacuolar protein sorting-associated protein 4 OS=S... [more]
VPS4A_RAT1.280e-2637.11Vacuolar protein sorting-associated protein 4A OS=... [more]
VPS4A_MOUSE1.280e-2637.11Vacuolar protein sorting-associated protein 4A OS=... [more]
VPS4A_HUMAN1.280e-2637.11Vacuolar protein sorting-associated protein 4A OS=... [more]
MPA_RHOER1.280e-2643.71Proteasome-associated ATPase OS=Rhodococcus erythr... [more]
YJNA_SCHPO2.851e-2636.79Uncharacterized AAA domain-containing protein C24B... [more]
MSP1_YEAST2.851e-2637.11Protein MSP1 OS=Saccharomyces cerevisiae GN=MSP1 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_11C09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11C09-F17-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069559 ID=CX069559; Name=CX069559; organism=Citrus sinensis; type=EST; length=907bp
CTTGCATGCGAATTTAAATTTAGATAAAATAGATTGCAAATTTGTTTATC
ATAAGAGGCTAGAGCGCAAGAAAAGACAACAGTCAGGCTAAAAGGGCCTA
TCGTGCAAATGTCCCAGAACACGAGTGAGTGCCGTTAAGGACTACTTGAA
TCTTGCTCAGAAAATAAGCAAATACACAGCACAGCACATGGAAATGATTA
CTTCCACAACTTCCGCAAGGACATGTTCTTCTCTGTTTCTTTCTTCATGA
CCTTGGCCACTGCCATCTCAAAATCTTCCTGTGTTACATGGATCCTTCTC
TCTCTTAGAGCAAACATACCGGCTTCTGTGCACACAGCCTTAAGCTCCGC
ACCAGATGCACCATTCATCTTCTCGGCAATCTTCTTCAAATCAATGCCAC
GCATTAAATTCATTCTTCTTGAATGAATTTTTAGGATATCAAGACGAGAC
TCTTCATTAGGATTTGGAAATTCAATCTTTCTGTCAATTCGTCCTGGCCT
GAGAAGAGCTTGATCGAGAATATCAATTCGATTTGTCGCCATGAGAACCT
TAATTTTGTTTGATGCTTCAAATCCATCAAGCTGGTTGAGCAGCTCCAGC
ATAGTCCTCTGCACCTCACTGTCACCATTTCCGCTGCCAGATTCCATTCG
GGCAGATCCGATACTGTCAATTTCATCCATAAAAATGATAGACGGAGCAT
GTTCCCTTGCCATAACAAAAAGTTCTCTAACCATTCTGGAGCCTTCTCCA
ATGTATTTCTGGACTAATTCAGAACCAGAAACCCTGATGAAAGTACAATC
AGTATGATGAGCCACAGCTCTAGCCAACAGTGTTTTGCCAGTACCAGGTG
GTCCATATAGCAATACACCCTTNGGGTTGAGCTATTCCAAGAGACTCGAA
CAATTCG
back to top