CX069559

Overview
NameCX069559
Unique NameCX069559
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PRS2_METTM (Putative 26S protease regulatory subunit homolog MTH1011 OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.033e-23
Identity = 66/220 (30.00%), Postives = 120/220 (54.55%), Query Frame = -3
Query:  222 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIG-SARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMF-ALRERRIHVTQEDFEMAVAKVMKKETEKNM 875
            P+ VL +G PGTGKT+LA+++A+        +  + L+ +++G+G+R + EL+ +A + APS+IF+DE+D+IG   R +S  G    +V   +  LL ++DG   +  +  + ATN  ++LD A+    R + +IEF  P ++ R  +L+ +   M L     + K+ +   G SG ++K    +  +  AL +    V +E  E A+ +   K   ++M
Sbjct:  157 PRNVLFHGSPGTGKTMLAKSLANELRVPLYLIKATSLIGEHVGDGARQIHELYELASKTAPSVIFIDEMDAIGLDRRFQSLRG----DVSEVVNALLTEMDGINQNWGVVTIGATNNPELLDNAI--RSRFEEEIEFKLPGDDERRMMLEKYIETMPLDVDFSVDKLVKLTKGMSGRDIKERVLKTALHRALADESPRVEREHIEYALKERDLKSEPRHM 370          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: FIGN_DANRE (Fidgetin OS=Danio rerio GN=fign PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.912e-22
Identity = 71/248 (28.63%), Postives = 132/248 (53.23%), Query Frame = -3
Query:  183 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS--NKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDIL-KIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEA--------------GMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRKLWK*SFPCA 875
            P+ +LL+GP GTG+TLL R +A      F+ +SGS LV K++GEG ++V+  F++AR   PS++F+ ++D + S+++       +S V R   ELL QLDG  +S    + V+ +T++ + +D++L R     +++  P P+  +R  I+ ++ S+    +   ++  + ++ +G SG ++  +C EA              GM   + R   V+ +DFE    K+    ++K +     W   F C+
Sbjct:  497 PRSILLFGPQGTGRTLLGRCMASQLGAAFLLLSGSALVTKWLGEGEKIVQASFLIARCRQPSVVFISDVDLLLSSQLSE-----ESPVNRIKSELLLQLDGVLSSPEEHVLVVCSTSKPEEIDESLRR--YFVKRLLVPLPDATARHQIISQLLSQHNYCLSDKEVTLLVQRTDGFSGLDVVRLCQEALVGPLHGMPGADLSGMIPGQMR--PVSYQDFENVFCKIQPSISQKELDTYTEWNKMFGCS 735          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PRS2_METTH (Putative 26S protease regulatory subunit homolog MTH_1011 OS=Methanobacterium thermoautotrophicum GN=MTH_1011 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.564e-22
Identity = 68/219 (31.05%), Postives = 116/219 (52.97%), Query Frame = -3
Query:  222 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELK-AVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNM 875
            P+ VL +G PGTGKT+LA+++A+        +  + L+ +++G+G+R + EL+ +A + APS+IF+DE+D+IG  R         SEV      LL ++DG   +  +  + ATN  ++LD+A+    R + +IEF  P++E R  +L+ +   M L     + K+ +     SG ++K  V   A   A+ E    V  E  E A+ +       K+M
Sbjct:  157 PRNVLFHGSPGTGKTMLAKSLANELKVPLYLIKATSLIGEHVGDGARQIHELYELASKTAPSVIFIDEMDAIGLDRRYQSLRGDVSEVVNA---LLTEMDGINQNWGVVTIGATNNPELLDKAI--RSRFEEEIEFKLPDDEERKLMLEKYIETMPLKVDFPVDKLVKLTREMSGRDIKDRVLKTALHRAIAEDSESVRAEHIEYALKERKVSGEPKHM 370          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: YR476_MIMIV (Putative AAA family ATPase R476 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R476 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.607e-21
Identity = 67/214 (31.31%), Postives = 120/214 (56.07%), Query Frame = -3
Query:  273 KGVLLYGPPGTGKTLLARAVAHHTDCT---FIRVSGSELVQKYIGEGSRMVRELFVMARE----HAP-SIIFMDEIDSIGSARMESGSGNGDSEVQRTML-ELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRM----NLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFAL-RERRIHVTQED 872
            KG++L+GPPGTGKT L+R +     C    F  +SG E+  K++G     +R +F  A++    H   S ++M  ID I  A + S SG+  + V+ +++ + L ++DG E  N +  +  TNR+++LD A +R GR    I+   P++E R+ I +IH++++     L   +D+ K+A      SGA+++ +   A +++L R  ++ V  +D
Sbjct:  604 KGIILHGPPGTGKTSLSRNLGKILGCEGDRFRLMSGPEIFNKWVGGSESNIRAIFKPAKDAWKKHGDKSPVYMVVIDEI-DAMLPSRSGSDGNPVRDSVVNQFLAEMDGLEVFNNLICIGITNRLELLDPATIRSGRFGIHIKIDLPDQEGRVKIFQIHTKKLQELNRLSDDVDISKLAVITEEFSGADIEGMVELASVYSLERLNKLDVINDD 816          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: FTSH2_HAEIN (Cell division protease ftsH homolog 2 OS=Haemophilus influenzae GN=ftsH-B PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.208e-20
Identity = 50/131 (38.17%), Postives = 81/131 (61.83%), Query Frame = -3
Query:  249 SGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV 641
            +G G G  E ++T+ ++L ++DGF  ++ + V+ ATNR D+LD AL RPGR DR++    P+ + R  ILK+H R++++ + +D   +A    G SGA+L  +  EA +FA R  +  VT  +FE A  K+
Sbjct:    7 AGLGGGHDEREQTLNQMLVEMDGFSGNDGVIVIAATNRPDVLDPALTRPGRFDRQVVVGLPDVKGREQILKVHMRKVSVAQDVDAMTLARGTPGYSGADLANLVNEAALFAARVNKRTVTMLEFEKAKDKI 137          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: YCF46_ODOSI (Uncharacterized AAA domain-containing protein ycf46 OS=Odontella sinensis GN=ycf46 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.675e-18
Identity = 63/225 (28.00%), Postives = 109/225 (48.44%), Query Frame = -3
Query:  207 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSR--RMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRKL 875
            P+G+LL G  GTGK+L A+A+A       +++    L    +GE    +R++  +A   +P I+++DE+D   S     G     + V  T +  L+     E +  + V+   N +D+L   ++R GR D       P  E R +I KIH +  R N  +  D KK+A+     SGAE++    EA M+   +++   T +D  +A+ +++     +N    KL
Sbjct:  259 PRGLLLIGIQGTGKSLTAKAIATEWQLPLLKLDVGRLFGGIVGESESRLRQMIDVAETLSPCILWIDEMDKAFSNNDSRGDSGTSNRVLATFISWLS-----EKTKPVFVVATANNVDLLPLEIIRKGRFDEIFFLDLPELEERKEIFKIHIQEFRPNSWKLFDYKKLAQLSESFSGAEIRQSIIEA-MYQAFDQQREFTTDDICLALKQLIPLAQLENSQTLKL 477          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: YCF46_PORPU (Uncharacterized AAA domain-containing protein ycf46 OS=Porphyra purpurea GN=ycf46 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.390e-17
Identity = 62/208 (29.81%), Postives = 101/208 (48.56%), Query Frame = -3
Query:  258 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRM--NLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAV 875
            PKG+LL G  GTGK+L A+A+A+      +R+   +L    +GE    +RE+  +A   +P ++++DEID   S     G     + V  T +  L+     E +  + V+   N I  L   +LR GR D       PN E R  I +IH  R+     +  ++K+++   N  SGAE++    E+   A  E R   + ED ++A+
Sbjct:  259 PKGLLLVGIQGTGKSLTAKAIANDWTLPLLRLDIGKLFGGLVGESESRMREMVTIAEGLSPCVLWIDEIDKAFSNLYSQGDSGTSARVFGTFITWLS-----EKTTPVFVVATANTIQNLPSEMLRKGRFDEIFFLDLPNNEERELIFQIHLARIRPKSWQNYNIKQLSLLCNKFSGAEIEQAIVESMHTAFSEER-EFSTEDIKIAL 460          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: Y4KL_RHISN (Uncharacterized AAA family ATPase y4kL OS=Rhizobium sp. (strain NGR234) GN=NGR_a02840 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.039e-17
Identity = 66/203 (32.51%), Postives = 99/203 (48.77%), Query Frame = -3
Query:  258 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAV 866
            +L  GPPG GKTL A   A        RV    L+  Y+GE +  +R+ F  AR+  P ++F DE D++   R +SG  N   E++R +  LL  +D  +   K  ++ ATN    LD A+ R  R D  + F  P        LK+  +  N+    D  + +  + G S AE++ VCT+A    + ERR  V + DF  A+
Sbjct:  121 MLFCGPPGCGKTLCAEIFAAELGLPLFRVKLDRLISSYLGETATNIRKTFEFARKQ-PCVLFFDEFDALARTRDDSGEHN---ELRRVVNSLLLFIDNMQP--KGFLIAATNLDRSLDAAIWR--RFDEVLWFDRPEAAMIGRFLKLKFK--NVPVAFDPARNSAALEGYSFAEIERVCTQAIKAMIIERRKQVQERDFNRAL 313          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: YCF46_PORYE (Uncharacterized AAA domain-containing protein ycf46 OS=Porphyra yezoensis GN=ycf46 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.568e-16
Identity = 62/209 (29.67%), Postives = 99/209 (47.37%), Query Frame = -3
Query:  258 NPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIH--SRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAV 878
            +PKG+LL G  GTGK+L A+A+A       +R+   +L    +GE    +RE+  ++   +P I+++DEID   S     G     + V  T +  L+     E    + V+   N+I  L   +LR GR D       PN + R  I KIH    R    +  D+ +++   N  SGAE++    E+   A  E R   + ED ++A+
Sbjct:  258 SPKGLLLVGIQGTGKSLTAKAIASDWMLPLLRLDMGKLFGGLVGESESKMREMINISEGLSPCILWIDEIDKAFSGLHSQGDSGTSARVFGTFITWLS-----EKKAPVFVVATANKIQSLPSEMLRKGRFDEIFFLDLPNRQERESIFKIHLSKVRPRSWQKYDIHELSLLCNKFSGAEIEQAIIESMHTAFSEER-EFSTEDIKIAI 460          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: YCF46_GRATL (Uncharacterized AAA domain-containing protein ycf46 OS=Gracilaria tenuistipitata var. liui GN=ycf46 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.493e-16
Identity = 57/202 (28.22%), Postives = 98/202 (48.51%), Query Frame = -3
Query:  276 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM--RGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQE 875
            PKG+LL G  GTGK+L+A+A++   +   +++   ++    +G+    +R +   A + +P I+++DEID   +          +  V  TML  L+     E    + V+   N++  L   LLR GR D       P+ E R  I +IH  +   +  R  D+K +++  +  SGAE++    EA   A  E+R   TQ+
Sbjct:  260 PKGILLIGIQGTGKSLIAKAISGQWNLPLLKLDMGKIFASLVGQSEERMRHMIKTAEQSSPCILWIDEIDKCFTRLNNYTDSGTNGRVLSTMLTWLS-----EKKKPVFVIATANQVLSLPSELLRKGRFDEIFFLNLPSLEEREKIFQIHLMKFRPLSWRKYDIKYLSKLTDQFSGAEIEQAIIEAMYNAFYEKREFSTQD 456          
The following BLAST results are available for this feature:
BLAST of CX069559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 389
Match NameE-valueIdentityDescription
PRS2_METTM5.033e-2330.00Putative 26S protease regulatory subunit homolog M... [more]
FIGN_DANRE1.912e-2228.63Fidgetin OS=Danio rerio GN=fign PE=2 SV=1[more]
PRS2_METTH5.564e-2231.05Putative 26S protease regulatory subunit homolog M... [more]
YR476_MIMIV3.607e-2131.31Putative AAA family ATPase R476 OS=Acanthamoeba po... [more]
FTSH2_HAEIN5.208e-2038.17Cell division protease ftsH homolog 2 OS=Haemophil... [more]
YCF46_ODOSI1.675e-1828.00Uncharacterized AAA domain-containing protein ycf4... [more]
YCF46_PORPU5.390e-1729.81Uncharacterized AAA domain-containing protein ycf4... [more]
Y4KL_RHISN7.039e-1732.51Uncharacterized AAA family ATPase y4kL OS=Rhizobiu... [more]
YCF46_PORYE1.568e-1629.67Uncharacterized AAA domain-containing protein ycf4... [more]
YCF46_GRATL3.493e-1628.22Uncharacterized AAA domain-containing protein ycf4... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11C09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11C09-F17-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069559 ID=CX069559; Name=CX069559; organism=Citrus sinensis; type=EST; length=907bp
CTTGCATGCGAATTTAAATTTAGATAAAATAGATTGCAAATTTGTTTATC
ATAAGAGGCTAGAGCGCAAGAAAAGACAACAGTCAGGCTAAAAGGGCCTA
TCGTGCAAATGTCCCAGAACACGAGTGAGTGCCGTTAAGGACTACTTGAA
TCTTGCTCAGAAAATAAGCAAATACACAGCACAGCACATGGAAATGATTA
CTTCCACAACTTCCGCAAGGACATGTTCTTCTCTGTTTCTTTCTTCATGA
CCTTGGCCACTGCCATCTCAAAATCTTCCTGTGTTACATGGATCCTTCTC
TCTCTTAGAGCAAACATACCGGCTTCTGTGCACACAGCCTTAAGCTCCGC
ACCAGATGCACCATTCATCTTCTCGGCAATCTTCTTCAAATCAATGCCAC
GCATTAAATTCATTCTTCTTGAATGAATTTTTAGGATATCAAGACGAGAC
TCTTCATTAGGATTTGGAAATTCAATCTTTCTGTCAATTCGTCCTGGCCT
GAGAAGAGCTTGATCGAGAATATCAATTCGATTTGTCGCCATGAGAACCT
TAATTTTGTTTGATGCTTCAAATCCATCAAGCTGGTTGAGCAGCTCCAGC
ATAGTCCTCTGCACCTCACTGTCACCATTTCCGCTGCCAGATTCCATTCG
GGCAGATCCGATACTGTCAATTTCATCCATAAAAATGATAGACGGAGCAT
GTTCCCTTGCCATAACAAAAAGTTCTCTAACCATTCTGGAGCCTTCTCCA
ATGTATTTCTGGACTAATTCAGAACCAGAAACCCTGATGAAAGTACAATC
AGTATGATGAGCCACAGCTCTAGCCAACAGTGTTTTGCCAGTACCAGGTG
GTCCATATAGCAATACACCCTTNGGGTTGAGCTATTCCAAGAGACTCGAA
CAATTCG
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