CX069559

Overview
NameCX069559
Unique NameCX069559
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: FTSH_CHLVU (Cell division protease ftsH homolog OS=Chlorella vulgaris GN=ftsH PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.016e-15
Identity = 69/279 (24.73%), Postives = 119/279 (42.65%), Query Frame = -3
Query:  210 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG-----------------------------------------SELVQKYIGE--GSRMVRELFVMAREHAPSIIFMD------------EIDSIGSARMESGSGNGDSEVQRTML--ELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRK 875
            P G+LL GPPGTGKTLL +A+A       I +SG                                         S+L+Q  +    G     E F++  + + S+   +            E D+    +      N     ++  L  +LL +LDG +  N + +  ATNR ++LD ALLRPGR D+ ++   P ++ R++IL+ + + +   + +      E+  G + A+L  +  E+ + A+  +  H T E  E  + ++   E+EK   L+K
Sbjct: 1007 PHGILLTGPPGTGKTLLVQALAGEAQVPVIVLSGSSLMEPGESAAFKLQLVFQEARQLAPCIVFIDEIDTLSSKRSQLLQNPMANDPGFESFLESFLLQSKPSQSVKKTESFFGKFKNGAKKEFDNFKKQKKNPAEYNSKQNEKQVSLLSQLLIELDGIQGRNGVVIFGATNRPEVLDPALLRPGRFDKIVKVGLPAQKKRVEILQFYGQTLGYQKTMPWAYFGERTVGFTAADLATLMNESALKAILNQSNH-TIETLEHGIERLTTSESEKYTVLKK 1284          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: YCF46_GUITH (Uncharacterized AAA domain-containing protein ycf46 OS=Guillardia theta GN=ycf46 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.862e-15
Identity = 61/202 (30.20%), Postives = 93/202 (46.04%), Query Frame = -3
Query:  276 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSR--RMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQE 875
            PKG+LL G  GTGK+L A+++A+  +   +++    L    IGE    VR++   A   +P I+++DEID    A   S   N     +R     +  L   E  + + V+   N ID L   LLR GR D       P+ + R  I K+H +  R       D + ++ + N  SGAE++    EA   A  E R   T +
Sbjct:  275 PKGLLLVGIQGTGKSLTAKSIANEWNLPLLKLDVGRLFGGIIGESEARVRQMIQFAETISPCILWIDEID---KAFTGSNFNNDSGTTKRVFGTFITWLS--EKKSPVFVVATANNIDSLPPELLRKGRFDEVFFIGLPDLKERECIFKVHLKKIRPKSWSTYDTEILSAQSNRFSGAEIEESIYEAMHIAFNENREFTTSD 471          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: FIGL2_HUMAN (Putative fidgetin-like protein 2 OS=Homo sapiens GN=FIGNL2 PE=5 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.468e-14
Identity = 65/228 (28.51%), Postives = 112/228 (49.12%), Query Frame = -3
Query:  204 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDG--FEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDIL-KIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFA-LRERRIHVTQEDFEMAVAKVMKKETEKNMSLRKLW 875
            P+ VLL+GP G GK LL R +A     T +R+ G+ L      EG+R+++  F  AR   PS++ + E++++  AR +  +  G  +V      LL  LDG     ++ + V+  T+R   LD+A  R  R   +     P+  +R  IL +  +++   +   +L  + +   G SG EL  +C +A   A L   +  ++ +D E A+AKV  + + K +     W
Sbjct:  425 PRTVLLFGPRGAGKALLGRCLATQLGATLLRLRGATLAAPGAAEGARLLQAAFAAARCRPPSVLLISELEALLPARDDGAAAGGALQV-----PLLACLDGGCGAGADGVLVVGTTSRPAALDEATRR--RFSLRFYVALPDSPARGQILQRALAQQGCALSERELAALVQGTQGFSGGELGQLCQQAAAGAGLPGLQRPLSYKDLEAALAKVGPRASAKELDSFVEW 645          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: YJOB_BACSU (Uncharacterized ATPase yjoB OS=Bacillus subtilis GN=yjoB PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.768e-13
Identity = 58/197 (29.44%), Postives = 95/197 (48.22%), Query Frame = -3
Query:  285 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALL-RPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHV 872
            +G+LLYGPPG GKT L +++A   D        +E         S  + E+F  AR  AP+++ +++IDS+              E  R+    LN LDG  +   + ++  TN  + +D  L+ R GR DR  E   P+EE RL+ +K+    + L  G ++K  A+   G S A+L  +   + +   +E   H+
Sbjct:  221 RGILLYGPPGNGKTTLVKSIAGSIDAPVAYWQITEFT------SSETIEEVFQAARRLAPAVLVIEDIDSM-------------PEDVRSF--FLNTLDGATSKEGLFLIGTTNYPEEIDPGLMNRAGRFDRAYEIGLPDEELRLEYMKMRGFGIFLSEG-EIKNAAKLTEGFSFAQLGELYVSSALQWHQEGNHHI 395          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: FTSH_OLTVI (Cell division protease ftsH homolog OS=Oltmannsiellopsis viridis GN=ftsH PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.997e-12
Identity = 44/153 (28.76%), Postives = 84/153 (54.90%), Query Frame = -3
Query:  234 DEIDSIGSARME-SGSGNGDSEVQRTMLE----LLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKET 677
            DE+++  S   + S   + + EV++  L     LL ++DG    N + V  ATNR ++LD AL+RPGR D+ +    P ++ R++ILK++++++   + I  +  A +  G S A+L A+  ++ + A+   + H T +  E  +  + K +T
Sbjct: 1474 DEMETRSSESTKASHESSNEMEVEKNQLSALIRLLVEMDGLNPLNGVIVFGATNRPEVLDPALIRPGRFDQILPIELPGKQKRVEILKLYAKKLGTAKSISWEYFANRTVGLSAADLAAIMNQSTILAVFNDQRH-TLKTLEYGLNIIYKPKT 1625          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PCH2_CAEEL (Putative pachytene checkpoint protein 2 OS=Caenorhabditis elegans GN=pch-2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.591e-11
Identity = 45/160 (28.12%), Postives = 77/160 (48.12%), Query Frame = -3
Query:  429 VLLYGPPGTGKTLLARAVAHH---------TDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPS-----IIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILK 866
            +LL GPPGTGKT L + +A H         +    + ++   L  K+  E  ++V+++F    E A        + +DE++S+G  R  S S +  S+  R +  LL Q+D     + + +L  +N    LD+AL+   R D       P++ +R  +LK
Sbjct:  175 ILLTGPPGTGKTSLCKGLAQHLSIRMNDKYSKSVMLEINSHSLFSKWFSESGKLVQKMFDQIDELAEDEKCMVFVLIDEVESLGMCRESSSSRSEPSDAIRAVNALLTQIDRIRRRDNVLILCTSNLESTLDKALV--DRADIVKNVGQPSDFARYSMLK 332          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: BCS1_YEAST (Mitochondrial chaperone BCS1 OS=Saccharomyces cerevisiae GN=BCS1 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.591e-11
Identity = 46/135 (34.07%), Postives = 69/135 (51.11%), Query Frame = -3
Query:  474 KGVLLYGPPGTGKTLLARAVAHHTDCTF--IRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKI 872
            +G LLYGPPG+GKT   +A+A   D     + +S + L    +           +M      SI+ +++ID+  + R ++G     S V  T   LLN LDG  +S +    M TN  + LD A++RPGRID K+
Sbjct:  261 RGYLLYGPPGSGKTSFIQALAGELDYNICILNLSENNLTDDRLNH---------LMNNMPERSILLLEDIDAAFNKRSQTGEQGFHSSV--TFSGLLNALDGVTSSEETITFMTTNHPEKLDAAIMRPGRIDYKV 384          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: BCS1A_DICDI (Probable mitochondrial chaperone BCS1-A OS=Dictyostelium discoideum GN=bcs1la PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.591e-11
Identity = 45/142 (31.69%), Postives = 73/142 (51.41%), Query Frame = -3
Query:  462 KGVLLYGPPGTGKTLLARAVAH--HTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSAR---MESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPN 872
            +G LLYG PG GK+ L  A+A   + D   + +S  ++  K I           ++      SI+ +++ID+   +    ++S + N ++    T   LLN LDG  +     + M TN+I++LD AL+R GRID KI+  N
Sbjct:  222 RGYLLYGEPGNGKSSLINAIAGELNLDICIVSLSSKDIDDKQINH---------LLNNAPPKSILLIEDIDAAFKSHRDNVDSNNNNSNNNNSLTYSGLLNALDGVASQEGRILFMTTNKIELLDSALIREGRIDLKIKVSN 354          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: BCS1_SCHPO (Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe GN=SPAC644.07 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.538e-11
Identity = 46/141 (32.62%), Postives = 71/141 (50.35%), Query Frame = -3
Query:  450 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEE 872
            +G LLYGPPG+GKT    A+A   D     ++ +E       +G    R   +++     +++ ++++DS    R  SG     + V  T   LLN LDG  +S++  + M TN  + LD AL+RPGR+D K    N   E
Sbjct:  243 RGYLLYGPPGSGKTSFLYALAGELDYDICVLNLAE-------KGLTDDRLNHLLSNVPPKAVVLLEDVDSAFQGRERSGEVGFHANV--TFSGLLNALDGVTSSDERIIFMTTNHPEKLDPALVRPGRVDVKAYLGNATPE 374          
The following BLAST results are available for this feature:
BLAST of CX069559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 389
Match NameE-valueIdentityDescription
FTSH_CHLVU1.016e-1524.73Cell division protease ftsH homolog OS=Chlorella v... [more]
YCF46_GUITH3.862e-1530.20Uncharacterized AAA domain-containing protein ycf4... [more]
FIGL2_HUMAN1.468e-1428.51Putative fidgetin-like protein 2 OS=Homo sapiens G... [more]
YJOB_BACSU2.768e-1329.44Uncharacterized ATPase yjoB OS=Bacillus subtilis G... [more]
FTSH_OLTVI3.997e-1228.76Cell division protease ftsH homolog OS=Oltmannsiel... [more]
PCH2_CAEEL2.591e-1128.13Putative pachytene checkpoint protein 2 OS=Caenorh... [more]
BCS1_YEAST2.591e-1134.07Mitochondrial chaperone BCS1 OS=Saccharomyces cere... [more]
BCS1A_DICDI2.591e-1131.69Probable mitochondrial chaperone BCS1-A OS=Dictyos... [more]
BCS1_SCHPO7.538e-1132.62Probable mitochondrial chaperone bcs1 OS=Schizosac... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11C09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11C09-F17-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069559 ID=CX069559; Name=CX069559; organism=Citrus sinensis; type=EST; length=907bp
CTTGCATGCGAATTTAAATTTAGATAAAATAGATTGCAAATTTGTTTATC
ATAAGAGGCTAGAGCGCAAGAAAAGACAACAGTCAGGCTAAAAGGGCCTA
TCGTGCAAATGTCCCAGAACACGAGTGAGTGCCGTTAAGGACTACTTGAA
TCTTGCTCAGAAAATAAGCAAATACACAGCACAGCACATGGAAATGATTA
CTTCCACAACTTCCGCAAGGACATGTTCTTCTCTGTTTCTTTCTTCATGA
CCTTGGCCACTGCCATCTCAAAATCTTCCTGTGTTACATGGATCCTTCTC
TCTCTTAGAGCAAACATACCGGCTTCTGTGCACACAGCCTTAAGCTCCGC
ACCAGATGCACCATTCATCTTCTCGGCAATCTTCTTCAAATCAATGCCAC
GCATTAAATTCATTCTTCTTGAATGAATTTTTAGGATATCAAGACGAGAC
TCTTCATTAGGATTTGGAAATTCAATCTTTCTGTCAATTCGTCCTGGCCT
GAGAAGAGCTTGATCGAGAATATCAATTCGATTTGTCGCCATGAGAACCT
TAATTTTGTTTGATGCTTCAAATCCATCAAGCTGGTTGAGCAGCTCCAGC
ATAGTCCTCTGCACCTCACTGTCACCATTTCCGCTGCCAGATTCCATTCG
GGCAGATCCGATACTGTCAATTTCATCCATAAAAATGATAGACGGAGCAT
GTTCCCTTGCCATAACAAAAAGTTCTCTAACCATTCTGGAGCCTTCTCCA
ATGTATTTCTGGACTAATTCAGAACCAGAAACCCTGATGAAAGTACAATC
AGTATGATGAGCCACAGCTCTAGCCAACAGTGTTTTGCCAGTACCAGGTG
GTCCATATAGCAATACACCCTTNGGGTTGAGCTATTCCAAGAGACTCGAA
CAATTCG
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