CX069559

Overview
NameCX069559
Unique NameCX069559
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PRS4_YEAST (26S protease regulatory subunit 4 homolog OS=Saccharomyces cerevisiae GN=RPT2 PE=1 SV=3)

HSP 1 Score: 258.84 bits (660), Expect = 3.011e-68
Identity = 125/218 (57.34%), Postives = 172/218 (78.90%), Query Frame = -3
Query:  222 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNM 875
            PKGV+LYG PGTGKTLLA+AVA+ T  TF+R+ GSEL+QKY+G+G R+ R++F +A E+APSI+F+DEID+IG+ R +S SG G+ E+QRTMLELLNQLDGF+    +KV+MATN+I+ LD AL+RPGRIDRKI F NP+  ++  IL IH+ +MNL   ++L+ +    +  SGA+++A+CTEAG+ ALRERR+ VT EDF+ A  +VMK + E+N+
Sbjct:  216 PKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSG-GEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKNKVEENL 432          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PRS4_DICDI (26S protease regulatory subunit 4 homolog OS=Dictyostelium discoideum GN=psmC1 PE=1 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 3.933e-68
Identity = 126/214 (58.88%), Postives = 171/214 (79.91%), Query Frame = -3
Query:  234 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKET 875
            PKGV+LYG PGTGKTLLA+AVA+ T  TF+RV GSEL+QKY+G+G ++VRELF +A E APSI+F+DEID++G+ R +S SG G+ E+QRTMLELLNQLDGF+A   +KV+MATNRI+ LD AL+RPGRIDRKIEFP P+ +++  I +IH+ +MNL   ++L++     +  SGA++KA+CTE+G+ ALRERR+ VT  DF+ A  KV+ ++T
Sbjct:  218 PKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVADECAPSIVFIDEIDAVGTKRYDSQSG-GEREIQRTMLELLNQLDGFDARTDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDIKTKRKIFEIHTAKMNLSEDVNLEEFVMSKDDLSGADIKAICTESGLLALRERRMRVTHTDFKKAKEKVLYRKT 430          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PRS7_YEAST (26S protease regulatory subunit 7 homolog OS=Saccharomyces cerevisiae GN=RPT1 PE=1 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 6.708e-68
Identity = 133/210 (63.33%), Postives = 163/210 (77.62%), Query Frame = -3
Query:  246 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVM 875
            PKG+LLYGPPGTGKTL ARAVA+ TD TFIRV GSELVQKY+GEG+RMVRELF MAR     IIF DEID++G AR + G+G GD+EVQRTMLEL+ QLDGF+    IKV+ ATNR + LD ALLRPGRIDRK+EF  P+ E R +I +IHS+ M++ RGI  + I+     ++GAEL++VCTEAGMFA+R RR   T++DF  AV KV+
Sbjct:  243 PKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAG-GDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVI 451          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PRS7_CAEEL (26S protease regulatory subunit 7 OS=Caenorhabditis elegans GN=rpt-1 PE=1 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 1.144e-67
Identity = 132/211 (62.56%), Postives = 162/211 (76.78%), Query Frame = -3
Query:  243 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 875
            PKGVLLYGPPGTGKTL ARAVA+ TD  FIRV GSELVQKY+GEG+RMVRELF MAR     +IF DEID++G AR + G G GD+EVQRTMLEL+NQLDGF+    IKVLMATNR D LD AL+RPGR+DRK+EF  P+   R  ILKIH+++M++ R I    +A     ++GAE+++VCTEAGMFA+R RR   T++DF  A+ KV+K
Sbjct:  211 PKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAVGGARFDDGQG-GDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFALPDLAGRAHILKIHAKQMSVERDIRYDLLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLEAINKVVK 420          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PSMR_UNCMA (Proteasome-activating nucleotidase OS=Uncultured methanogenic archaeon RC-I GN=pan PE=3 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.494e-67
Identity = 135/220 (61.36%), Postives = 170/220 (77.27%), Query Frame = -3
Query:  216 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSL 875
            PKGVLLYGPPGTGKTLLA+AVA+ T  TFIR+ GSELVQKYIGEG+RMVRELF +A+E +PSIIF+DEIDSIG+ R++S + +GD EVQRT+++LL ++DGF+    +++L ATNR DILD ALLRPGR DR I+ P P  E+R  ILKIH+R+MNL   +DL+KIA   + +SGA+L A+  EAGMFA+R  R  V   DF  AVAKVM    E+N S+
Sbjct:  193 PKGVLLYGPPGTGKTLLAKAVANRTKATFIRIIGSELVQKYIGEGARMVRELFELAKEKSPSIIFIDEIDSIGAKRLDSIT-SGDREVQRTLVQLLAEMDGFDPRGNVRILAATNRPDILDPALLRPGRFDRMIKVPMPTAEAREQILKIHARKMNLADDVDLRKIALITDESSGADLSAIVMEAGMFAIRNNRDVVDSSDFNAAVAKVM---GERNRSM 408          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PRS7_RAT (26S protease regulatory subunit 7 OS=Rattus norvegicus GN=Psmc2 PE=1 SV=3)

HSP 1 Score: 256.529 bits (654), Expect = 1.494e-67
Identity = 134/211 (63.51%), Postives = 162/211 (76.78%), Query Frame = -3
Query:  243 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 875
            PKGVLL+GPPGTGKTL ARAVA+ TD  FI V GSELVQKY+GEG+RMVRELF MAR     +IF DEID+IG AR + G+G GD+EVQRTMLEL+NQLDGF+    IKVLMATNR D LD AL+RPGR+DRKIEF  P+ E R  I KIH+R M++ R I  + +A     ++GAE+++VCTEAGMFA+R RR   T++DF  AV KV+K
Sbjct:  209 PKGVLLFGPPGTGKTLCARAVANRTDACFIPVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAG-GDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 418          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PSMR_METB6 (Proteasome-activating nucleotidase OS=Methanoregula boonei (strain 6A8) GN=pan PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 4.348e-67
Identity = 125/209 (59.81%), Postives = 167/209 (79.90%), Query Frame = -3
Query:  249 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV 875
            PKGVLLYGPPGTGKTLLA+AVAH T+  F+RV GSELVQKYIGEG+R+VRELF +A++ AP+IIF+DEID++G++R E+ + +GD EVQRT+++LL  +DGFE    +K++ ATNRIDILD+ALLRPGR DR IE P P+EE RL ILK+H+R + +   ++L +IA    G +GA+L+A+C EAGM+A+R  R  +T+EDF  A+ KV
Sbjct:  212 PKGVLLYGPPGTGKTLLAKAVAHETNAHFMRVVGSELVQKYIGEGARLVRELFDLAKKKAPTIIFIDEIDAVGASRTEANT-SGDREVQRTLMQLLAGMDGFETRGDVKIIGATNRIDILDKALLRPGRFDRIIEIPLPDEEGRLSILKVHTRTLTMEETVNLPEIAGLTEGKNGADLRAICMEAGMYAIRNERPAITREDFLSAIEKV 419          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PSMR_METTH (Proteasome-activating nucleotidase OS=Methanobacterium thermoautotrophicum GN=pan PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 5.679e-67
Identity = 128/216 (59.26%), Postives = 168/216 (77.78%), Query Frame = -3
Query:  228 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEK 875
            PKGVLLYGPPGTGKTLLA+AVAH T+ TFI++  SE V+KYIGEG+R+VR +F +A+E +PSIIF+DEID++ + R++S S +GD EVQRT+++LL +LDGFE+   + ++ ATNR DILD ALLRPGR DR IE P PNE+ R +ILKIH+  M L   +D++ +A   +GASGA+LKA+CTEAGMFA+R+ R  VT  DF  AV K+M  E E+
Sbjct:  185 PKGVLLYGPPGTGKTLLAKAVAHETNATFIKIVASEFVRKYIGEGARLVRGVFELAKEKSPSIIFIDEIDAVAAKRLKS-STSGDREVQRTLMQLLAELDGFESRGNVGIVAATNRPDILDPALLRPGRFDRFIEVPLPNEDGRREILKIHTSGMALAEEVDIELLARITDGASGADLKAICTEAGMFAIRDERDEVTMADFMDAVDKIMGVEKEE 399          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PSMR_METM6 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 5.679e-67
Identity = 124/223 (55.61%), Postives = 177/223 (79.37%), Query Frame = -3
Query:  207 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRKL 875
            PKGVLLYGPPGTGKTLLA+AVA+ T+ +F+RV GSELV+K+IGEG+++VR++F +A+E +P IIF+DEID++ S R ES +G GD EVQRT+++LL ++DGF++   +K++ ATNR DILD A+LRPGR DR IE   P+E+ RLDILKIH+ +MNL +G+DL+++A+      GA+LKAVCTEAGMFA+RE R  +  +DF+ A++K+  K+ + +  + +L
Sbjct:  182 PKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTG-GDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLDILKIHTEKMNL-KGVDLREVAKLAENMVGADLKAVCTEAGMFAIREEREFIKMDDFKEAISKITGKKEKCSYDMPQL 402          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PRS7_SCHPO (26S protease regulatory subunit 7 homolog OS=Schizosaccharomyces pombe GN=rpt1 PE=1 SV=2)

HSP 1 Score: 254.603 bits (649), Expect = 5.679e-67
Identity = 133/211 (63.03%), Postives = 162/211 (76.78%), Query Frame = -3
Query:  243 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 875
            PKG++LYGPPGTGKTL ARAVA+ TD TFIRV GSELVQKY+GEG+RMVRELF MAR     IIF DEID+IG AR + G+G GD+EVQRTMLEL+ QLDGF+    IKVL ATNR + LD+AL+RPGRIDRK+EF  P+ E R  IL+IH++ M + + I  + IA      +GAEL++VCTEAGMFA+R RR   T++DF  AV KV+K
Sbjct:  213 PKGIMLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAG-GDNEVQRTMLELITQLDGFDPRGNIKVLFATNRPNTLDEALMRPGRIDRKVEFGLPDLEGRAHILRIHAKSMAIDKDIRWELIARLCPSQTGAELRSVCTEAGMFAIRARRRVATEKDFLDAVQKVVK 422          
The following BLAST results are available for this feature:
BLAST of CX069559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 389
Match NameE-valueIdentityDescription
PRS4_YEAST3.011e-6857.3426S protease regulatory subunit 4 homolog OS=Sacch... [more]
PRS4_DICDI3.933e-6858.8826S protease regulatory subunit 4 homolog OS=Dicty... [more]
PRS7_YEAST6.708e-6863.3326S protease regulatory subunit 7 homolog OS=Sacch... [more]
PRS7_CAEEL1.144e-6762.5626S protease regulatory subunit 7 OS=Caenorhabditi... [more]
PSMR_UNCMA1.494e-6761.36Proteasome-activating nucleotidase OS=Uncultured m... [more]
PRS7_RAT1.494e-6763.5126S protease regulatory subunit 7 OS=Rattus norveg... [more]
PSMR_METB64.348e-6759.81Proteasome-activating nucleotidase OS=Methanoregul... [more]
PSMR_METTH5.679e-6759.26Proteasome-activating nucleotidase OS=Methanobacte... [more]
PSMR_METM65.679e-6755.61Proteasome-activating nucleotidase OS=Methanococcu... [more]
PRS7_SCHPO5.679e-6763.0326S protease regulatory subunit 7 homolog OS=Schiz... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11C09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11C09-F17-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069559 ID=CX069559; Name=CX069559; organism=Citrus sinensis; type=EST; length=907bp
CTTGCATGCGAATTTAAATTTAGATAAAATAGATTGCAAATTTGTTTATC
ATAAGAGGCTAGAGCGCAAGAAAAGACAACAGTCAGGCTAAAAGGGCCTA
TCGTGCAAATGTCCCAGAACACGAGTGAGTGCCGTTAAGGACTACTTGAA
TCTTGCTCAGAAAATAAGCAAATACACAGCACAGCACATGGAAATGATTA
CTTCCACAACTTCCGCAAGGACATGTTCTTCTCTGTTTCTTTCTTCATGA
CCTTGGCCACTGCCATCTCAAAATCTTCCTGTGTTACATGGATCCTTCTC
TCTCTTAGAGCAAACATACCGGCTTCTGTGCACACAGCCTTAAGCTCCGC
ACCAGATGCACCATTCATCTTCTCGGCAATCTTCTTCAAATCAATGCCAC
GCATTAAATTCATTCTTCTTGAATGAATTTTTAGGATATCAAGACGAGAC
TCTTCATTAGGATTTGGAAATTCAATCTTTCTGTCAATTCGTCCTGGCCT
GAGAAGAGCTTGATCGAGAATATCAATTCGATTTGTCGCCATGAGAACCT
TAATTTTGTTTGATGCTTCAAATCCATCAAGCTGGTTGAGCAGCTCCAGC
ATAGTCCTCTGCACCTCACTGTCACCATTTCCGCTGCCAGATTCCATTCG
GGCAGATCCGATACTGTCAATTTCATCCATAAAAATGATAGACGGAGCAT
GTTCCCTTGCCATAACAAAAAGTTCTCTAACCATTCTGGAGCCTTCTCCA
ATGTATTTCTGGACTAATTCAGAACCAGAAACCCTGATGAAAGTACAATC
AGTATGATGAGCCACAGCTCTAGCCAACAGTGTTTTGCCAGTACCAGGTG
GTCCATATAGCAATACACCCTTNGGGTTGAGCTATTCCAAGAGACTCGAA
CAATTCG
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